Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31593 * 122.23344 * 2 1 4 4 C 1.29946 * 117.13738 * 179.97438 * 3 2 1 5 5 N 1.38892 * 125.36003 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99668 * 179.72060 * 5 4 3 7 7 O 1.21293 * 120.00229 * 0.28097 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27660 * 6 5 4 9 9 C 1.47201 * 109.47316 * 180.02562 * 8 6 5 10 10 N 7.89897 * 165.16405 * 0.64307 * 2 1 3 11 11 S 1.76140 * 109.27263 * 0.22462 * 4 3 2 12 12 C 1.34660 * 122.22797 * 179.97438 * 2 1 3 13 13 S 1.76199 * 125.93193 * 0.02562 * 12 2 1 14 14 C 1.76192 * 99.99981 * 179.97438 * 13 12 2 15 15 H 1.08001 * 120.00141 * 0.02562 * 14 13 12 16 16 C 1.38437 * 120.00107 * 180.02562 * 14 13 12 17 17 N 1.31807 * 120.00163 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99537 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47241 * 90.00370 * 18 16 14 20 20 H 1.48510 * 109.47200 * 210.00213 * 18 16 14 21 21 H 1.48497 * 109.47709 * 330.00146 * 18 16 14 22 22 H 1.09005 * 109.47133 * 90.02633 * 1 2 3 23 23 H 1.09000 * 109.47697 * 210.02776 * 1 2 3 24 24 H 1.09005 * 109.46895 * 330.03461 * 1 2 3 25 25 H 0.97001 * 120.00544 * 0.02562 * 5 4 3 26 26 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 27 27 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 28 28 H 0.96999 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4044 2.0545 0.0001 6 6 5.7298 1.8099 0.0064 7 8 6.1355 0.6668 0.0073 8 6 6.7077 2.9565 0.0123 9 6 8.0820 2.4292 0.0179 10 7 9.1426 2.0224 0.0227 11 16 3.9346 -0.7101 -0.0054 12 6 2.2251 -1.1391 0.0005 13 16 1.5696 -2.7747 0.0006 14 6 3.0664 -3.7042 0.0006 15 1 4.0186 -3.1945 0.0009 16 6 3.0220 -5.0878 0.0001 17 7 4.1417 -5.7832 -0.0004 18 14 1.3751 -5.9693 0.0002 19 1 0.9383 -6.2025 -1.3998 20 1 1.5110 -7.2722 0.6998 21 1 0.3666 -5.1342 0.7007 22 1 -0.3634 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3633 0.8903 0.5133 25 1 4.0800 2.9687 -0.0003 26 1 6.5568 3.5672 -0.8779 27 1 6.5481 3.5656 0.9020 28 1 4.1105 -6.7527 -0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356010260.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = 32.002908 kcal Electronic energy + Delta-G solvation = -16499.691590 eV Core-core repulsion = 13575.992678 eV Total energy + Delta-G solvation = -2923.698912 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42527 -38.74314 -36.66523 -34.96998 -32.78939 -31.69986 -30.26267 -27.21207 -25.93696 -24.08368 -21.49741 -20.18159 -18.53146 -17.98610 -17.38930 -16.90254 -16.29063 -15.78359 -15.32245 -14.82253 -14.64275 -14.09522 -13.78935 -13.26923 -13.04264 -12.80731 -12.70427 -12.32778 -12.05408 -11.98621 -11.61170 -11.38982 -11.33795 -10.95579 -10.73779 -10.17755 -10.08149 -9.52570 -9.24583 -8.91984 -8.83071 -7.95985 -6.78945 -6.58602 -4.32629 1.20479 1.70237 2.11997 2.19130 2.44327 2.56128 2.75135 3.00358 3.08113 3.17157 3.34090 3.45104 3.55123 3.99997 4.36157 4.43961 4.70756 4.71991 4.81381 5.04502 5.81021 5.95126 6.08467 6.27430 6.31394 6.76533 6.94360 7.31036 7.64021 7.72500 8.20596 8.34387 8.80674 10.49196 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.005230 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.033591 B = 5352.357956 C = 6691.928559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.030 3.970 3 N -0.476 5.476 4 C 0.186 3.814 5 N -0.610 5.610 6 C 0.508 3.492 7 O -0.491 6.491 8 C -0.030 4.030 9 C 0.214 3.786 10 N -0.405 5.405 11 S 0.232 5.768 12 C -0.237 4.237 13 S 0.060 5.940 14 C -0.547 4.547 15 H 0.105 0.895 16 C 0.102 3.898 17 N -0.855 5.855 18 Si 0.852 3.148 19 H -0.261 1.261 20 H -0.265 1.265 21 H -0.236 1.236 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.418 0.582 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 17.347 0.078 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 N -0.197 5.197 4 C -0.184 4.184 5 N -0.259 5.259 6 C 0.290 3.710 7 O -0.364 6.364 8 C -0.073 4.073 9 C -0.105 4.105 10 N -0.081 5.081 11 S 0.478 5.522 12 C -0.473 4.473 13 S 0.308 5.692 14 C -0.695 4.695 15 H 0.123 0.877 16 C -0.110 4.110 17 N -0.488 5.488 18 Si 0.676 3.324 19 H -0.185 1.185 20 H -0.189 1.189 21 H -0.160 1.160 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.256 0.744 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.167 15.122 0.078 15.167 hybrid contribution -0.690 0.557 -0.019 0.887 sum -1.857 15.679 0.058 15.788 Atomic orbital electron populations 1.20151 0.87934 1.02259 1.01957 1.19096 0.96792 0.84532 1.10816 1.65840 1.02810 1.32212 1.18886 1.23889 0.90011 0.93266 1.11217 1.42194 1.03988 1.08395 1.71367 1.20265 0.82007 0.90869 0.77836 1.90836 1.76832 1.22261 1.46472 1.18953 0.82836 0.96760 1.08707 1.27900 0.94099 0.94261 0.94270 1.81236 1.12919 1.06280 1.07620 1.86269 1.00588 0.94329 1.71031 1.28197 1.01653 1.04589 1.12870 1.82473 1.13422 0.89100 1.84250 1.22673 0.92396 0.94533 1.59915 0.87743 1.24754 0.97413 0.96245 0.92579 1.70010 1.26504 1.07738 1.44578 0.86812 0.83784 0.81412 0.80406 1.18515 1.18935 1.15980 0.91672 0.91089 0.91658 0.74367 0.83725 0.83718 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.02 36.00 0.36 -0.63 15 2 C 0.03 0.57 6.73 -83.96 -0.57 0.01 15 3 N -0.48 -8.53 10.55 -9.78 -0.10 -8.63 15 4 C 0.19 3.17 8.40 -87.19 -0.73 2.44 15 5 N -0.61 -6.80 5.40 -11.78 -0.06 -6.87 15 6 C 0.51 5.62 7.77 -10.98 -0.09 5.53 15 7 O -0.49 -8.37 13.55 5.55 0.08 -8.29 15 8 C -0.03 -0.15 6.19 -30.67 -0.19 -0.34 15 9 C 0.21 2.22 14.67 -20.76 -0.30 1.92 15 10 N -0.40 -5.75 18.54 42.15 0.78 -4.97 15 11 S 0.23 4.93 18.35 -107.50 -1.97 2.96 15 12 C -0.24 -5.14 6.67 29.47 0.20 -4.95 15 13 S 0.06 1.39 18.70 -107.50 -2.01 -0.62 15 14 C -0.55 -15.03 9.80 30.81 0.30 -14.73 15 15 H 0.10 3.09 6.21 -52.49 -0.33 2.76 15 16 C 0.10 2.79 5.49 -17.49 -0.10 2.70 15 17 N -0.86 -24.61 13.98 55.47 0.78 -23.83 15 18 Si 0.85 19.44 27.73 -169.99 -4.71 14.72 15 19 H -0.26 -5.84 7.11 56.52 0.40 -5.43 15 20 H -0.26 -5.86 7.11 56.52 0.40 -5.46 15 21 H -0.24 -5.11 6.73 56.52 0.38 -4.73 15 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.07 1.10 7.38 -51.93 -0.38 0.72 15 24 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.42 2.76 8.82 -40.82 -0.36 2.40 15 26 H 0.15 0.12 8.14 -51.93 -0.42 -0.30 15 27 H 0.15 0.12 8.14 -51.93 -0.42 -0.30 15 28 H 0.28 7.32 8.32 -40.82 -0.34 6.98 15 LS Contribution 286.79 15.07 4.32 4.32 Total: -1.00 -35.71 286.79 -5.94 -41.65 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -1.92 Total: -2.38 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.11 Total: -8.05 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 1.39 Total: -44.30 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -3.98 Total: 2.34 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.71 -5.94 -41.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356010260.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.651 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds