Wall clock time and date at job start Tue Mar 31 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31593 * 122.23344 * 2 1 4 4 C 1.29946 * 117.13738 * 179.97438 * 3 2 1 5 5 N 1.38892 * 125.36003 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99668 * 179.72060 * 5 4 3 7 7 O 1.21293 * 120.00229 * 0.28097 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27660 * 6 5 4 9 9 C 1.47201 * 109.47316 * 180.02562 * 8 6 5 10 10 N 7.89897 * 165.16405 * 0.64307 * 2 1 3 11 11 S 1.76140 * 109.27263 * 0.22462 * 4 3 2 12 12 C 1.34660 * 122.22797 * 179.97438 * 2 1 3 13 13 S 1.76199 * 125.93193 * 0.02562 * 12 2 1 14 14 C 1.76192 * 99.99981 * 179.97438 * 13 12 2 15 15 H 1.08001 * 120.00141 * 0.02562 * 14 13 12 16 16 C 1.38437 * 120.00107 * 180.02562 * 14 13 12 17 17 N 1.31807 * 120.00163 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99537 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47241 * 90.00370 * 18 16 14 20 20 H 1.48510 * 109.47200 * 210.00213 * 18 16 14 21 21 H 1.48497 * 109.47709 * 330.00146 * 18 16 14 22 22 H 1.09005 * 109.47133 * 90.02633 * 1 2 3 23 23 H 1.09000 * 109.47697 * 210.02776 * 1 2 3 24 24 H 1.09005 * 109.46895 * 330.03461 * 1 2 3 25 25 H 0.97001 * 120.00544 * 0.02562 * 5 4 3 26 26 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 27 27 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 28 28 H 0.96999 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4044 2.0545 0.0001 6 6 5.7298 1.8099 0.0064 7 8 6.1355 0.6668 0.0073 8 6 6.7077 2.9565 0.0123 9 6 8.0820 2.4292 0.0179 10 7 9.1426 2.0224 0.0227 11 16 3.9346 -0.7101 -0.0054 12 6 2.2251 -1.1391 0.0005 13 16 1.5696 -2.7747 0.0006 14 6 3.0664 -3.7042 0.0006 15 1 4.0186 -3.1945 0.0009 16 6 3.0220 -5.0878 0.0001 17 7 4.1417 -5.7832 -0.0004 18 14 1.3751 -5.9693 0.0002 19 1 0.9383 -6.2025 -1.3998 20 1 1.5110 -7.2722 0.6998 21 1 0.3666 -5.1342 0.7007 22 1 -0.3634 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3633 0.8903 0.5133 25 1 4.0800 2.9687 -0.0003 26 1 6.5568 3.5672 -0.8779 27 1 6.5481 3.5656 0.9020 28 1 4.1105 -6.7527 -0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356010260.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:10 Heat of formation + Delta-G solvation = 4.421053 kcal Electronic energy + Delta-G solvation = -16500.887629 eV Core-core repulsion = 13575.992678 eV Total energy + Delta-G solvation = -2924.894951 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53635 -40.19616 -37.59262 -36.18372 -34.82734 -32.69133 -31.34865 -28.76815 -27.90120 -25.36415 -22.69476 -21.62451 -20.05755 -19.26729 -18.42585 -18.21433 -17.32236 -17.18862 -17.16602 -16.12973 -15.83683 -15.42541 -14.99361 -14.86249 -14.47136 -13.90267 -13.63366 -13.55622 -13.46495 -13.35159 -13.17951 -13.06977 -12.64626 -12.35403 -12.13709 -11.93655 -11.46234 -11.29088 -10.88553 -10.57577 -10.52872 -9.59784 -8.62050 -8.52408 -6.34924 -0.25886 0.19226 0.77517 1.06902 1.16821 1.19592 1.28686 1.39459 1.62008 1.78025 2.00917 2.06712 2.13708 2.51163 2.76842 2.89061 3.49535 3.84270 4.40174 4.46229 4.47403 4.70052 4.88829 4.97354 5.06776 5.47503 5.60116 5.94384 6.07431 6.54791 6.74327 6.76425 6.88704 8.50611 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.005230 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.033591 B = 5352.357956 C = 6691.928559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.055 3.945 3 N -0.479 5.479 4 C 0.239 3.761 5 N -0.590 5.590 6 C 0.509 3.491 7 O -0.551 6.551 8 C -0.010 4.010 9 C 0.237 3.763 10 N -0.485 5.485 11 S 0.150 5.850 12 C -0.278 4.278 13 S 0.059 5.941 14 C -0.567 4.567 15 H 0.066 0.934 16 C 0.046 3.954 17 N -0.910 5.910 18 Si 0.915 3.085 19 H -0.252 1.252 20 H -0.255 1.255 21 H -0.218 1.218 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.448 0.552 26 H 0.205 0.795 27 H 0.205 0.795 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 21.364 0.092 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 N -0.201 5.201 4 C -0.134 4.134 5 N -0.243 5.243 6 C 0.295 3.705 7 O -0.427 6.427 8 C -0.051 4.051 9 C -0.081 4.081 10 N -0.162 5.162 11 S 0.396 5.604 12 C -0.512 4.512 13 S 0.303 5.697 14 C -0.715 4.715 15 H 0.084 0.916 16 C -0.160 4.160 17 N -0.546 5.546 18 Si 0.734 3.266 19 H -0.176 1.176 20 H -0.179 1.179 21 H -0.141 1.141 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.292 0.708 26 H 0.222 0.778 27 H 0.222 0.778 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.428 19.239 0.094 19.542 hybrid contribution 0.160 -0.228 -0.032 0.280 sum -3.268 19.011 0.061 19.290 Atomic orbital electron populations 1.20328 0.85176 1.03554 1.03492 1.19828 0.98623 0.83928 1.06228 1.66095 1.02453 1.30852 1.20693 1.24204 0.90378 0.92952 1.05877 1.42332 1.03340 1.08240 1.70419 1.21517 0.82226 0.91637 0.75127 1.90865 1.77571 1.25567 1.48674 1.19445 0.77271 0.94147 1.14261 1.28893 0.94891 0.92443 0.91841 1.81266 1.15922 1.08380 1.10612 1.86726 1.02203 0.98717 1.72750 1.28077 1.01517 1.04424 1.17209 1.81886 1.10667 0.89713 1.87385 1.22857 0.93338 0.95441 1.59847 0.91566 1.25762 1.01394 0.96940 0.91937 1.70127 1.29182 1.08233 1.47011 0.85878 0.79206 0.80439 0.81044 1.17648 1.17937 1.14075 0.89858 0.91073 0.89059 0.70827 0.77791 0.77784 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 10.02 71.24 0.71 -1.15 15 2 C 0.06 2.01 6.73 41.77 0.28 2.29 15 3 N -0.48 -15.65 10.55 -184.87 -1.95 -17.60 15 4 C 0.24 7.56 8.40 179.15 1.50 9.06 15 5 N -0.59 -10.58 5.40 -309.56 -1.67 -12.25 15 6 C 0.51 9.47 7.77 87.66 0.68 10.15 15 7 O -0.55 -18.50 13.55 -3.07 -0.04 -18.54 15 8 C -0.01 -0.04 6.19 28.04 0.17 0.13 15 9 C 0.24 4.33 14.67 89.44 1.31 5.64 15 10 N -0.48 -13.66 18.54 20.00 0.37 -13.29 15 11 S 0.15 6.56 18.35 -56.49 -1.04 5.52 15 12 C -0.28 -12.16 6.67 67.00 0.45 -11.71 15 13 S 0.06 2.77 18.70 -56.49 -1.06 1.71 15 14 C -0.57 -32.93 9.80 67.87 0.67 -32.27 15 15 H 0.07 4.25 6.21 -2.91 -0.02 4.23 15 16 C 0.05 2.65 5.49 84.74 0.47 3.11 15 17 N -0.91 -55.40 13.98 21.59 0.30 -55.10 15 18 Si 0.92 40.94 27.73 68.60 1.90 42.84 15 19 H -0.25 -10.85 7.11 99.48 0.71 -10.14 15 20 H -0.26 -10.86 7.11 99.48 0.71 -10.16 15 21 H -0.22 -8.99 6.73 99.48 0.67 -8.32 15 22 H 0.08 2.11 8.14 -2.38 -0.02 2.09 15 23 H 0.07 2.04 7.38 -2.39 -0.02 2.02 15 24 H 0.09 2.11 8.14 -2.38 -0.02 2.09 15 25 H 0.45 3.04 8.82 -92.71 -0.82 2.22 15 26 H 0.21 -1.32 8.14 -2.39 -0.02 -1.34 15 27 H 0.21 -1.32 8.14 -2.39 -0.02 -1.34 15 28 H 0.28 15.65 8.32 -92.71 -0.77 14.88 15 Total: -1.00 -88.65 286.79 3.44 -85.21 By element: Atomic # 1 Polarization: -4.16 SS G_CDS: 0.38 Total: -3.78 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 6.24 Total: -14.74 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -2.95 Total: -98.23 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.04 Total: -18.54 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.90 Total: 42.84 kcal Atomic # 16 Polarization: 9.33 SS G_CDS: -2.09 Total: 7.24 kcal Total: -88.65 3.44 -85.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356010260.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.632 kcal (2) G-P(sol) polarization free energy of solvation -88.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds