Wall clock time and date at job start Tue Mar 31 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34820 * 117.00669 * 2 1 4 4 O 1.21549 * 119.99683 * 0.02562 * 3 2 1 5 5 C 1.47012 * 120.00331 * 180.02562 * 3 2 1 6 6 C 1.36690 * 125.16174 * 180.02562 * 5 3 2 7 7 C 1.36775 * 114.72917 * 179.97438 * 6 5 3 8 8 C 1.36624 * 114.75499 * 359.97438 * 7 6 5 9 9 C 1.47199 * 125.15982 * 179.97438 * 8 7 6 10 10 O 1.21624 * 119.99960 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00426 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00291 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47431 * 35.00280 * 12 11 9 14 14 C 1.53001 * 109.47345 * 275.00282 * 12 11 9 15 15 C 1.50700 * 109.47279 * 155.00373 * 12 11 9 16 16 H 1.08001 * 120.00261 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99992 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99882 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00021 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47299 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47507 * 119.99490 * 19 17 15 22 22 H 1.48496 * 109.47299 * 239.99982 * 19 17 15 23 23 S 1.75833 * 125.16518 * 359.95362 * 5 3 2 24 24 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46537 * 299.99911 * 1 2 3 26 26 H 1.09000 * 109.46788 * 59.99429 * 1 2 3 27 27 H 1.07995 * 122.63806 * 0.22052 * 6 5 3 28 28 H 1.07997 * 122.61791 * 179.97438 * 7 6 5 29 29 H 0.97005 * 120.00267 * 0.02562 * 11 9 8 30 30 H 1.09004 * 109.47398 * 59.99533 * 14 12 11 31 31 H 1.09002 * 109.47554 * 180.02562 * 14 12 11 32 32 H 1.09006 * 109.46720 * 299.99978 * 14 12 11 33 33 H 0.97000 * 119.99697 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2012 0.0000 4 8 1.4023 2.2206 0.0005 5 6 3.5323 1.2780 -0.0006 6 6 4.2600 2.4351 -0.0001 7 6 5.6162 2.2581 -0.0003 8 6 6.0230 0.9538 -0.0003 9 6 7.4242 0.5029 -0.0009 10 8 8.3257 1.3192 -0.0011 11 7 7.7081 -0.8146 -0.0003 12 6 9.1026 -1.2634 -0.0004 13 1 9.7066 -0.5731 0.5886 14 6 9.6264 -1.3006 -1.4375 15 6 9.1865 -2.6428 0.6006 16 1 8.2907 -3.1357 0.9483 17 6 10.4071 -3.2752 0.7076 18 7 11.4980 -2.6747 0.2846 19 14 10.5111 -4.9847 1.4532 20 1 9.1527 -5.4358 1.8487 21 1 11.0747 -5.9273 0.4537 22 1 11.3886 -4.9499 2.6507 23 16 4.6188 -0.1045 -0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 3.8002 3.4123 0.0042 28 1 6.3112 3.0848 -0.0004 29 1 6.9891 -1.4658 0.0002 30 1 9.5657 -0.3029 -1.8724 31 1 10.6639 -1.6350 -1.4377 32 1 9.0225 -1.9910 -2.0265 33 1 12.3566 -3.1197 0.3595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356443893.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:55 Heat of formation + Delta-G solvation = -89.634626 kcal Electronic energy + Delta-G solvation = -19018.374102 eV Core-core repulsion = 15750.188063 eV Total energy + Delta-G solvation = -3268.186039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57368 -39.21797 -37.48921 -36.46450 -34.90498 -32.54416 -30.73002 -29.11708 -27.88909 -25.60350 -25.28592 -22.38110 -21.83522 -20.02685 -19.19058 -18.99066 -17.58893 -16.66099 -16.54229 -16.24358 -15.60513 -15.22633 -14.57380 -14.50503 -14.07127 -13.73483 -13.48669 -13.04171 -12.64938 -12.60490 -12.49625 -12.29870 -11.78686 -11.22437 -11.14142 -11.13014 -11.02680 -10.89662 -10.82620 -10.37745 -10.30255 -9.46432 -9.14275 -9.02684 -8.77938 -8.63725 -8.09592 -6.18888 -4.28745 -0.06977 1.18937 1.62920 1.85706 2.33854 2.66685 3.20735 3.28678 3.31238 3.59857 3.77890 4.30926 4.54117 4.79642 4.87702 5.01795 5.13434 5.15763 5.19550 5.24650 5.73016 5.90827 6.02981 6.11707 6.73917 6.85975 7.04430 7.25948 7.38015 7.42160 7.60318 7.80814 8.05446 8.44455 8.64355 8.87129 9.38621 10.87224 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.003826 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.517680 B = 7316.210357 C = 8200.789778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.543 3.457 4 O -0.499 6.499 5 C -0.254 4.254 6 C -0.047 4.047 7 C -0.097 4.097 8 C -0.198 4.198 9 C 0.567 3.433 10 O -0.531 6.531 11 N -0.697 5.697 12 C 0.264 3.736 13 H 0.053 0.947 14 C -0.149 4.149 15 C -0.537 4.537 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 S 0.238 5.762 24 H 0.105 0.895 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.387 0.613 30 H 0.016 0.984 31 H 0.093 0.907 32 H 0.028 0.972 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.297 4.311 -1.224 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 C 0.387 3.613 4 O -0.388 6.388 5 C -0.373 4.373 6 C -0.082 4.082 7 C -0.129 4.129 8 C -0.321 4.321 9 C 0.350 3.650 10 O -0.410 6.410 11 N -0.344 5.344 12 C 0.163 3.837 13 H 0.071 0.929 14 C -0.207 4.207 15 C -0.575 4.575 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 S 0.507 5.493 24 H 0.123 0.877 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.220 0.780 30 H 0.035 0.965 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.840 3.470 -1.237 18.216 hybrid contribution -0.295 0.346 0.363 0.582 sum -18.135 3.816 -0.874 18.553 Atomic orbital electron populations 1.23323 0.75367 1.04050 1.02768 1.86584 1.24020 1.32058 1.84456 1.19759 0.87019 0.81779 0.72788 1.90868 1.65897 1.35896 1.46179 1.23663 0.93873 0.99058 1.20729 1.20550 0.92523 0.98513 0.96592 1.20525 0.95037 0.96493 1.00814 1.25701 0.98629 0.98188 1.09595 1.17124 0.85354 0.84009 0.78514 1.90794 1.45889 1.53376 1.50976 1.46553 1.12093 1.04611 1.71183 1.18880 0.75123 0.95325 0.94393 0.92882 1.22101 1.04263 0.97307 0.97055 1.21224 0.94109 1.00512 1.41666 0.91876 1.24883 0.95366 0.98305 0.95051 1.69906 0.98556 1.37801 1.45670 0.86364 0.78263 0.83437 0.78885 1.19651 1.20796 1.20806 1.84339 0.93124 1.05954 1.65877 0.87682 0.91631 0.91644 0.82446 0.82029 0.77992 0.96456 0.88838 0.95259 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.88 10.41 -40.82 -0.43 -4.30 16 3 C 0.54 6.83 7.94 34.29 0.27 7.10 16 4 O -0.50 -7.08 16.61 -19.30 -0.32 -7.40 16 5 C -0.25 -3.18 6.46 -36.59 -0.24 -3.42 16 6 C -0.05 -0.56 9.88 -40.67 -0.40 -0.96 16 7 C -0.10 -1.30 9.88 -40.69 -0.40 -1.70 16 8 C -0.20 -3.07 6.46 -36.53 -0.24 -3.31 16 9 C 0.57 11.29 7.77 -12.62 -0.10 11.19 16 10 O -0.53 -12.40 16.48 5.26 0.09 -12.31 16 11 N -0.70 -14.36 5.06 -56.09 -0.28 -14.64 16 12 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 13 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.15 -3.61 9.26 37.16 0.34 -3.26 16 15 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -24.29 11.32 55.43 0.63 -23.66 16 19 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 S 0.24 3.02 22.17 -107.50 -2.38 0.63 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.16 1.57 8.04 -52.49 -0.42 1.14 16 28 H 0.16 2.04 8.04 -52.49 -0.42 1.62 16 29 H 0.39 6.98 7.64 -40.82 -0.31 6.66 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 311.85 15.07 4.70 4.70 Total: -1.00 -30.77 311.85 -6.80 -37.57 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.52 Total: 3.39 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -0.26 Total: 0.86 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.34 Total: -38.31 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.66 Total: -24.01 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.38 Total: 0.63 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.77 -6.80 -37.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356443893.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.065 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds