Wall clock time and date at job start Tue Mar 31 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34820 * 117.00669 * 2 1 4 4 O 1.21549 * 119.99683 * 0.02562 * 3 2 1 5 5 C 1.47012 * 120.00331 * 180.02562 * 3 2 1 6 6 C 1.36690 * 125.16174 * 180.02562 * 5 3 2 7 7 C 1.36775 * 114.72917 * 179.97438 * 6 5 3 8 8 C 1.36624 * 114.75499 * 359.97438 * 7 6 5 9 9 C 1.47199 * 125.15982 * 179.97438 * 8 7 6 10 10 O 1.21624 * 119.99960 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00426 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00291 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47431 * 35.00280 * 12 11 9 14 14 C 1.53001 * 109.47345 * 275.00282 * 12 11 9 15 15 C 1.50700 * 109.47279 * 155.00373 * 12 11 9 16 16 H 1.08001 * 120.00261 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99992 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99882 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00021 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47299 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47507 * 119.99490 * 19 17 15 22 22 H 1.48496 * 109.47299 * 239.99982 * 19 17 15 23 23 S 1.75833 * 125.16518 * 359.95362 * 5 3 2 24 24 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46537 * 299.99911 * 1 2 3 26 26 H 1.09000 * 109.46788 * 59.99429 * 1 2 3 27 27 H 1.07995 * 122.63806 * 0.22052 * 6 5 3 28 28 H 1.07997 * 122.61791 * 179.97438 * 7 6 5 29 29 H 0.97005 * 120.00267 * 0.02562 * 11 9 8 30 30 H 1.09004 * 109.47398 * 59.99533 * 14 12 11 31 31 H 1.09002 * 109.47554 * 180.02562 * 14 12 11 32 32 H 1.09006 * 109.46720 * 299.99978 * 14 12 11 33 33 H 0.97000 * 119.99697 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2012 0.0000 4 8 1.4023 2.2206 0.0005 5 6 3.5323 1.2780 -0.0006 6 6 4.2600 2.4351 -0.0001 7 6 5.6162 2.2581 -0.0003 8 6 6.0230 0.9538 -0.0003 9 6 7.4242 0.5029 -0.0009 10 8 8.3257 1.3192 -0.0011 11 7 7.7081 -0.8146 -0.0003 12 6 9.1026 -1.2634 -0.0004 13 1 9.7066 -0.5731 0.5886 14 6 9.6264 -1.3006 -1.4375 15 6 9.1865 -2.6428 0.6006 16 1 8.2907 -3.1357 0.9483 17 6 10.4071 -3.2752 0.7076 18 7 11.4980 -2.6747 0.2846 19 14 10.5111 -4.9847 1.4532 20 1 9.1527 -5.4358 1.8487 21 1 11.0747 -5.9273 0.4537 22 1 11.3886 -4.9499 2.6507 23 16 4.6188 -0.1045 -0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 3.8002 3.4123 0.0042 28 1 6.3112 3.0848 -0.0004 29 1 6.9891 -1.4658 0.0002 30 1 9.5657 -0.3029 -1.8724 31 1 10.6639 -1.6350 -1.4377 32 1 9.0225 -1.9910 -2.0265 33 1 12.3566 -3.1197 0.3595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356443893.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:55 Heat of formation + Delta-G solvation = -109.346016 kcal Electronic energy + Delta-G solvation = -19019.228852 eV Core-core repulsion = 15750.188063 eV Total energy + Delta-G solvation = -3269.040789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50273 -40.78240 -38.59084 -37.44867 -36.73839 -34.43083 -32.03793 -30.69638 -28.75182 -27.36824 -26.64548 -23.73332 -23.02005 -21.74935 -20.50233 -20.09764 -18.80760 -17.97898 -17.62508 -17.52133 -17.04692 -16.74800 -16.14834 -15.98887 -15.35655 -14.76235 -14.61301 -14.46412 -14.25906 -13.85349 -13.59607 -13.51721 -13.08096 -12.98103 -12.89176 -12.75293 -12.29886 -12.23906 -12.11942 -11.89198 -11.88187 -11.14954 -11.10658 -10.62853 -10.22621 -9.86303 -9.75810 -8.18875 -6.36611 -1.16623 0.12206 0.56394 0.78783 1.45879 1.47212 1.50209 1.59023 1.64310 2.11866 2.21719 2.47519 3.12290 3.64339 3.77882 3.98573 4.19079 4.27684 4.34087 4.68849 4.71296 4.78514 4.88668 4.90352 5.05313 5.09046 5.14672 5.36672 5.51204 5.63454 5.83358 6.05829 6.45584 6.66952 6.74858 7.19318 7.37989 8.87810 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.003826 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.517680 B = 7316.210357 C = 8200.789778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.545 3.455 4 O -0.516 6.516 5 C -0.250 4.250 6 C -0.044 4.044 7 C -0.078 4.078 8 C -0.237 4.237 9 C 0.569 3.431 10 O -0.575 6.575 11 N -0.696 5.696 12 C 0.270 3.730 13 H 0.007 0.993 14 C -0.136 4.136 15 C -0.550 4.550 16 H 0.074 0.926 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.284 1.284 23 S 0.278 5.722 24 H 0.135 0.865 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.181 0.819 28 H 0.166 0.834 29 H 0.401 0.599 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.839 3.324 -1.020 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.390 3.610 4 O -0.407 6.407 5 C -0.369 4.369 6 C -0.078 4.078 7 C -0.111 4.111 8 C -0.359 4.359 9 C 0.355 3.645 10 O -0.457 6.457 11 N -0.344 5.344 12 C 0.167 3.833 13 H 0.025 0.975 14 C -0.195 4.195 15 C -0.588 4.588 16 H 0.092 0.908 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.797 3.203 20 H -0.183 1.183 21 H -0.204 1.204 22 H -0.210 1.210 23 S 0.549 5.451 24 H 0.153 0.847 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.198 0.802 28 H 0.184 0.816 29 H 0.236 0.764 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.437 2.451 -1.036 20.609 hybrid contribution 0.352 0.702 0.296 0.839 sum -20.085 3.153 -0.741 20.344 Atomic orbital electron populations 1.23683 0.73243 1.06225 1.03149 1.86575 1.26102 1.31007 1.83872 1.19716 0.86848 0.82071 0.72405 1.90865 1.66204 1.36575 1.47053 1.23910 0.94288 0.99338 1.19402 1.20679 0.91566 0.99462 0.96100 1.20679 0.95887 0.95851 0.98672 1.25177 0.97181 0.99807 1.13770 1.17571 0.86968 0.83099 0.76861 1.90759 1.48007 1.54231 1.52746 1.46264 1.10849 1.05561 1.71768 1.18488 0.76840 0.94167 0.93788 0.97511 1.21931 1.03096 0.97383 0.97107 1.21544 0.94704 1.00809 1.41718 0.90753 1.25776 0.94971 1.02223 0.95357 1.70047 0.99125 1.39509 1.46684 0.85283 0.78644 0.78555 0.77789 1.18294 1.20365 1.20964 1.84148 0.91173 1.04820 1.64975 0.84692 0.91302 0.91271 0.80190 0.81616 0.76379 0.96581 0.91070 0.93889 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.36 -6.88 10.41 -57.33 -0.60 -7.48 16 3 C 0.55 12.38 7.94 70.12 0.56 12.93 16 4 O -0.52 -13.44 16.61 19.67 0.33 -13.12 16 5 C -0.25 -5.65 6.46 24.21 0.16 -5.49 16 6 C -0.04 -0.95 9.88 21.56 0.21 -0.73 16 7 C -0.08 -1.98 9.88 21.55 0.21 -1.77 16 8 C -0.24 -7.16 6.46 24.25 0.16 -7.00 16 9 C 0.57 23.03 7.77 86.60 0.67 23.70 16 10 O -0.58 -27.86 16.48 -4.11 -0.07 -27.93 16 11 N -0.70 -28.97 5.06 -449.61 -2.28 -31.25 16 12 C 0.27 13.79 2.56 44.25 0.11 13.90 16 13 H 0.01 0.42 7.58 -2.39 -0.02 0.40 16 14 C -0.14 -6.79 9.26 71.98 0.67 -6.12 16 15 C -0.55 -28.53 8.73 25.60 0.22 -28.31 16 16 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 17 C 0.02 0.90 5.30 84.66 0.45 1.35 16 18 N -0.92 -51.44 11.32 21.45 0.24 -51.20 16 19 Si 0.97 41.04 29.54 68.60 2.03 43.07 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 S 0.28 6.52 22.17 -56.49 -1.25 5.27 16 24 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.18 3.05 8.04 -2.91 -0.02 3.03 16 28 H 0.17 4.04 8.04 -2.91 -0.02 4.02 16 29 H 0.40 14.22 7.64 -92.70 -0.71 13.51 16 30 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 32 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -67.08 311.85 3.46 -63.61 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.44 Total: 15.01 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.62 Total: 4.01 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.03 Total: -82.45 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -0.34 Total: -48.52 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -1.25 Total: 5.27 kcal Total: -67.08 3.46 -63.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356443893.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.731 kcal (2) G-P(sol) polarization free energy of solvation -67.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds