Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33895 * 122.07813 * 2 1 4 4 S 1.76260 * 108.17611 * 180.02562 * 3 2 1 5 5 C 1.76177 * 89.82486 * 359.97438 * 4 3 2 6 6 C 1.47944 * 125.46591 * 179.97438 * 5 4 3 7 7 N 1.30929 * 126.43341 * 179.66686 * 6 5 4 8 8 O 1.21287 * 110.06172 * 179.87018 * 7 6 5 9 9 C 1.33676 * 110.06418 * 0.40099 * 8 7 6 10 10 C 1.50707 * 126.41877 * 179.75300 * 9 8 7 11 11 S 1.80994 * 109.47004 * 269.99959 * 10 9 8 12 12 C 1.76208 * 99.99858 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99702 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99986 * 179.97438 * 12 11 10 15 15 N 1.31635 * 119.99974 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99890 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47023 * 60.00409 * 16 14 12 18 18 H 1.48497 * 109.46779 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46941 * 300.00072 * 16 14 12 20 20 N 1.30940 * 107.17071 * 359.74989 * 9 8 7 21 21 N 1.30196 * 109.06074 * 359.74037 * 5 4 3 22 22 H 1.08999 * 109.47015 * 90.00140 * 1 2 3 23 23 H 1.09000 * 109.46646 * 209.99292 * 1 2 3 24 24 H 1.09000 * 109.47248 * 330.00010 * 1 2 3 25 25 H 1.08002 * 125.91446 * 359.96810 * 3 2 1 26 26 H 1.09003 * 109.46516 * 29.99980 * 10 9 8 27 27 H 1.09004 * 109.47080 * 149.99278 * 10 9 8 28 28 H 0.97001 * 119.99986 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2181 1.1345 0.0000 4 16 3.9291 0.7110 -0.0007 5 6 3.5006 -0.9978 -0.0002 6 6 4.4606 -2.1235 -0.0010 7 7 4.1636 -3.3987 0.0055 8 8 5.1788 -4.0623 0.0001 9 6 6.2497 -3.2622 -0.0019 10 6 7.6923 -3.6983 -0.0031 11 16 8.2717 -3.8712 1.7028 12 6 9.9349 -4.3751 1.4114 13 1 10.2963 -4.4855 0.3997 14 6 10.7808 -4.6290 2.4821 15 7 10.3405 -4.4939 3.7153 16 14 12.5442 -5.1625 2.1732 17 1 13.2511 -4.1108 1.3992 18 1 13.2334 -5.3694 3.4721 19 1 12.5494 -6.4320 1.4028 20 7 5.8106 -2.0286 -0.0026 21 7 2.2036 -1.1109 0.0060 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8901 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.8134 2.1359 -0.0005 26 1 7.7819 -4.6558 -0.5162 27 1 8.2970 -2.9520 -0.5185 28 1 10.9315 -4.6718 4.4636 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356692277.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = 90.216292 kcal Electronic energy + Delta-G solvation = -16202.596221 eV Core-core repulsion = 13281.421631 eV Total energy + Delta-G solvation = -2921.174590 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.82850 -40.91079 -37.25267 -34.98175 -34.58447 -32.80395 -30.08668 -28.70902 -27.68138 -27.55125 -24.81470 -23.09054 -20.41021 -19.98629 -19.48155 -19.30305 -18.24719 -17.09112 -16.87536 -16.38515 -16.06949 -15.78120 -15.08282 -14.77149 -14.47958 -14.44478 -13.81651 -13.54838 -13.36131 -13.18964 -13.05570 -12.84485 -12.71590 -12.45959 -12.29097 -12.04948 -11.32314 -11.12203 -11.02972 -10.61772 -10.43227 -9.72243 -8.75657 -8.37124 -6.17191 -1.00170 -0.15358 -0.04379 0.56570 0.81510 1.35472 1.48158 1.48910 1.56711 1.66624 1.80757 1.86974 2.24350 2.81385 3.00187 3.17427 3.33728 3.80661 4.11922 4.13583 4.18621 4.24767 4.55602 4.60695 4.75133 4.79149 4.84885 5.28867 5.44455 6.20107 6.45229 6.83084 7.05906 8.71994 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.041895 B = 0.003275 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.174005 B = 8547.952898 C = 8820.977990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.039 3.961 3 C -0.219 4.219 4 S 0.198 5.802 5 C 0.084 3.916 6 C 0.226 3.774 7 N -0.363 5.363 8 O 0.092 5.908 9 C 0.235 3.765 10 C -0.020 4.020 11 S -0.150 6.150 12 C -0.537 4.537 13 H 0.094 0.906 14 C 0.018 3.982 15 N -0.910 5.910 16 Si 0.998 3.002 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.261 1.261 20 N -0.476 5.476 21 N -0.458 5.458 22 H 0.089 0.911 23 H 0.066 0.934 24 H 0.107 0.893 25 H 0.230 0.770 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.098 11.247 -9.546 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 C -0.359 4.359 4 S 0.451 5.549 5 C -0.190 4.190 6 C -0.046 4.046 7 N -0.071 5.071 8 O 0.029 5.971 9 C 0.015 3.985 10 C -0.168 4.168 11 S 0.077 5.923 12 C -0.684 4.684 13 H 0.112 0.888 14 C -0.187 4.187 15 N -0.546 5.546 16 Si 0.820 3.180 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.186 1.186 20 N -0.211 5.211 21 N -0.177 5.177 22 H 0.107 0.893 23 H 0.085 0.915 24 H 0.126 0.874 25 H 0.247 0.753 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.650 11.594 -8.381 20.477 hybrid contribution 0.928 -0.877 -0.823 1.519 sum -13.722 10.717 -9.204 19.694 Atomic orbital electron populations 1.20540 0.84166 1.04588 1.04242 1.20775 1.00181 0.85524 1.02960 1.27751 0.94283 1.05571 1.08259 1.85148 1.06760 0.97891 1.65098 1.23393 0.90665 0.94384 1.10513 1.22597 0.88641 0.90012 1.03385 1.75049 1.06756 1.05323 1.19941 1.85329 1.10869 1.35791 1.65129 1.28117 0.94015 0.83397 0.92992 1.21897 0.83556 1.07282 1.04105 1.85332 1.15291 1.89660 1.02052 1.23072 0.95283 1.53434 0.96629 0.88827 1.26081 1.04181 0.94488 0.93967 1.70142 1.38390 1.46838 0.99252 0.84991 0.75972 0.79275 0.77745 1.18655 1.20726 1.18552 1.72027 1.05907 1.21442 1.21701 1.66210 1.03815 1.33853 1.13789 0.89273 0.91492 0.87416 0.75302 0.84981 0.85206 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.28 71.24 0.73 -0.27 15 2 C 0.04 0.83 6.69 41.68 0.28 1.11 15 3 C -0.22 -3.53 11.09 66.83 0.74 -2.79 15 4 S 0.20 4.55 23.43 -56.49 -1.32 3.23 15 5 C 0.08 2.69 7.54 87.51 0.66 3.35 15 6 C 0.23 8.37 8.12 137.07 1.11 9.49 15 7 N -0.36 -14.01 12.21 -58.98 -0.72 -14.73 15 8 O 0.09 3.40 11.29 74.55 0.84 4.24 15 9 C 0.24 8.65 7.75 88.36 0.68 9.33 15 10 C -0.02 -0.71 6.30 71.24 0.45 -0.26 15 11 S -0.15 -7.43 21.42 -56.49 -1.21 -8.64 15 12 C -0.54 -28.11 9.50 67.95 0.65 -27.47 15 13 H 0.09 4.49 7.80 -2.91 -0.02 4.47 15 14 C 0.02 0.97 5.49 84.86 0.47 1.43 15 15 N -0.91 -52.61 13.22 21.65 0.29 -52.33 15 16 Si 1.00 41.08 29.55 68.60 2.03 43.11 15 17 H -0.26 -10.26 7.11 99.48 0.71 -9.56 15 18 H -0.28 -11.46 7.11 99.48 0.71 -10.76 15 19 H -0.26 -10.19 7.11 99.48 0.71 -9.49 15 20 N -0.48 -17.83 11.58 -302.44 -3.50 -21.33 15 21 N -0.46 -13.91 10.54 -177.73 -1.87 -15.78 15 22 H 0.09 0.96 8.14 -2.39 -0.02 0.94 15 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 15 24 H 0.11 0.74 8.11 -2.39 -0.02 0.72 15 25 H 0.23 1.47 8.06 -2.91 -0.02 1.45 15 26 H 0.13 4.14 8.14 -2.39 -0.02 4.12 15 27 H 0.13 4.33 8.14 -2.39 -0.02 4.31 15 28 H 0.27 14.75 8.31 -92.71 -0.77 13.97 15 Total: -1.00 -68.62 292.19 1.50 -67.12 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.21 Total: 1.20 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.77 Total: -6.08 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -5.81 Total: -104.17 kcal Atomic # 8 Polarization: 3.40 SS G_CDS: 0.84 Total: 4.24 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.53 Total: -5.41 kcal Total: -68.62 1.50 -67.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356692277.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.332 kcal (2) G-P(sol) polarization free energy of solvation -68.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds