Wall clock time and date at job start Tue Mar 31 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 S 1.75941 * 125.19888 * 16.04754 * 3 2 1 5 5 C 1.76006 * 90.68883 * 180.02562 * 4 3 2 6 6 N 1.30860 * 125.48018 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.53007 * 109.46827 * 118.57141 * 7 6 5 9 9 C 1.50708 * 115.54833 * 320.33953 * 8 7 6 10 10 H 1.08004 * 119.99532 * 99.41116 * 9 8 7 11 11 C 1.37877 * 119.99941 * 279.41046 * 9 8 7 12 12 N 1.31510 * 120.00216 * 355.03126 * 11 9 8 13 13 Si 1.86800 * 119.99643 * 175.03441 * 11 9 8 14 14 H 1.48497 * 109.47075 * 89.99815 * 13 11 9 15 15 H 1.48497 * 109.47185 * 209.99815 * 13 11 9 16 16 H 1.48496 * 109.47227 * 329.99948 * 13 11 9 17 17 C 1.52998 * 117.49969 * 174.67258 * 8 7 6 18 18 C 1.52998 * 60.02908 * 252.49694 * 17 8 7 19 19 N 1.35951 * 109.03930 * 0.26479 * 5 4 3 20 20 H 0.97001 * 122.50684 * 179.73628 * 19 5 4 21 21 C 1.33687 * 125.19234 * 196.08813 * 3 2 1 22 22 Cl 1.73597 * 122.15636 * 359.97438 * 21 3 2 23 23 H 1.08999 * 109.47236 * 358.57697 * 7 6 5 24 24 H 1.08994 * 109.47505 * 238.56761 * 7 6 5 25 25 H 0.96998 * 120.00253 * 179.97438 * 12 11 9 26 26 H 1.09003 * 117.49421 * 359.97438 * 17 8 7 27 27 H 1.08996 * 117.50087 * 144.99528 * 17 8 7 28 28 H 1.09009 * 117.49993 * 107.50311 * 18 17 8 29 29 H 1.08996 * 117.50172 * 252.51711 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5827 -1.3806 -0.3974 5 6 5.0326 -0.4219 -0.1210 6 7 6.2624 -0.8519 -0.2440 7 6 6.5172 -2.2383 -0.6431 8 6 7.2861 -2.2551 -1.9658 9 6 6.8554 -1.2280 -2.9811 10 1 7.4173 -0.3127 -3.0951 11 6 5.7440 -1.4569 -3.7644 12 7 5.1172 -2.6109 -3.6955 13 14 5.1287 -0.1276 -4.9236 14 1 5.7857 -0.2814 -6.2464 15 1 3.6577 -0.2527 -5.0840 16 1 5.4535 1.2082 -4.3620 17 6 7.7592 -3.6121 -2.4907 18 6 8.7718 -2.6198 -1.9155 19 7 4.6694 0.8355 0.2471 20 1 5.3185 1.5268 0.4513 21 6 3.3380 1.0507 0.3028 22 17 2.6687 2.5899 0.7461 23 1 5.5687 -2.7607 -0.7676 24 1 7.1075 -2.7353 0.1266 25 1 4.3352 -2.7718 -4.2463 26 1 7.5231 -4.4928 -1.8935 27 1 7.7590 -3.7620 -3.5703 28 1 9.2016 -2.8478 -0.9400 29 1 9.4376 -2.1167 -2.6167 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381596447.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:11 Heat of formation + Delta-G solvation = 102.159790 kcal Electronic energy + Delta-G solvation = -17239.975170 eV Core-core repulsion = 14317.274782 eV Total energy + Delta-G solvation = -2922.700388 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.92439 -37.28351 -36.83590 -36.45678 -33.95542 -31.94847 -30.75548 -26.79375 -25.37357 -23.23520 -22.62978 -21.10887 -19.28841 -18.49064 -17.49219 -16.79945 -16.02268 -15.41668 -14.88250 -14.61036 -14.44821 -13.76487 -13.54651 -13.15662 -13.07384 -12.61996 -12.36580 -11.96672 -11.85555 -11.64688 -10.98111 -10.96575 -10.91589 -10.57142 -10.26896 -10.11980 -9.63271 -9.27491 -9.06624 -8.91307 -8.43539 -7.99621 -6.92108 -6.05058 -4.08856 0.83991 0.89466 1.40408 2.03317 2.52550 2.93054 3.04346 3.26602 3.31401 3.35929 3.37188 4.13570 4.39365 4.87324 5.18323 5.25577 5.54129 6.08951 6.10940 6.33094 6.37493 6.54814 6.65134 6.76836 6.94756 7.06424 7.33907 7.50007 7.50645 7.87880 8.15905 8.43168 8.90930 9.56105 11.03572 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.006576 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.684509 B = 4256.937964 C = 4653.103971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.300 3.700 3 C -0.195 4.195 4 S 0.109 5.891 5 C 0.328 3.672 6 N -0.480 5.480 7 C 0.104 3.896 8 C 0.050 3.950 9 C -0.487 4.487 10 H 0.057 0.943 11 C 0.078 3.922 12 N -0.871 5.871 13 Si 0.874 3.126 14 H -0.281 1.281 15 H -0.283 1.283 16 H -0.275 1.275 17 C -0.154 4.154 18 C -0.207 4.207 19 N -0.597 5.597 20 H 0.431 0.569 21 C 0.238 3.762 22 Cl 0.005 6.995 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.261 0.739 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 5.594 9.263 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.016 4.016 3 C -0.323 4.323 4 S 0.347 5.653 5 C -0.060 4.060 6 N -0.206 5.206 7 C -0.026 4.026 8 C 0.049 3.951 9 C -0.525 4.525 10 H 0.075 0.925 11 C -0.126 4.126 12 N -0.508 5.508 13 Si 0.701 3.299 14 H -0.207 1.207 15 H -0.208 1.208 16 H -0.200 1.200 17 C -0.192 4.192 18 C -0.244 4.244 19 N -0.220 5.220 20 H 0.272 0.728 21 C 0.086 3.914 22 Cl 0.033 6.967 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.165 4.439 8.893 10.432 hybrid contribution -0.031 2.094 -0.511 2.156 sum -3.196 6.533 8.382 11.098 Atomic orbital electron populations 1.81230 1.10788 1.06815 1.09988 1.23724 0.90321 0.94241 0.93318 1.18455 0.90100 0.99862 1.23891 1.86245 0.93493 1.07596 1.77961 1.23977 0.94198 0.87593 1.00205 1.71387 1.11655 1.18393 1.19153 1.21783 0.99755 0.83940 0.97159 1.18730 0.89349 0.95166 0.91828 1.20255 1.11448 1.02728 1.18046 0.92525 1.24847 0.96505 0.94922 0.96279 1.69947 1.19686 1.21504 1.39620 0.86873 0.78451 0.82870 0.81672 1.20664 1.20832 1.19976 1.22569 1.03603 0.93065 0.99977 1.23031 0.94681 1.06550 1.00161 1.40884 1.04000 1.12532 1.64615 0.72805 1.19519 0.84055 0.88622 0.99247 1.98460 1.82558 1.25189 1.90499 0.92965 0.91664 0.92927 0.91980 0.89694 0.91678 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.81 18.54 41.84 0.78 -6.03 15 2 C 0.30 4.69 15.18 -22.48 -0.34 4.34 15 3 C -0.20 -2.97 6.22 -39.25 -0.24 -3.21 15 4 S 0.11 1.91 21.38 -107.50 -2.30 -0.39 15 5 C 0.33 5.77 8.35 -89.24 -0.75 5.02 15 6 N -0.48 -9.48 9.97 -61.35 -0.61 -10.09 15 7 C 0.10 2.17 6.42 -4.04 -0.03 2.15 15 8 C 0.05 1.17 1.77 -155.62 -0.28 0.89 15 9 C -0.49 -12.53 8.14 -34.44 -0.28 -12.81 15 10 H 0.06 1.52 7.82 -52.48 -0.41 1.11 15 11 C 0.08 2.02 5.44 -17.82 -0.10 1.93 15 12 N -0.87 -22.86 12.86 55.43 0.71 -22.14 15 13 Si 0.87 20.62 29.54 -169.99 -5.02 15.60 15 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 15 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 17 C -0.15 -3.41 9.43 -26.73 -0.25 -3.66 15 18 C -0.21 -4.32 9.89 -26.70 -0.26 -4.59 15 19 N -0.60 -8.33 5.58 -10.83 -0.06 -8.39 15 20 H 0.43 4.88 8.96 -40.82 -0.37 4.52 15 21 C 0.24 3.19 7.35 -17.76 -0.13 3.06 15 22 Cl 0.00 0.05 28.61 -51.86 -1.48 -1.43 15 23 H 0.05 1.14 6.20 -51.93 -0.32 0.81 15 24 H 0.07 1.24 7.95 -51.93 -0.41 0.83 15 25 H 0.26 6.70 8.31 -40.82 -0.34 6.36 15 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 27 H 0.08 2.03 8.14 -51.93 -0.42 1.61 15 28 H 0.06 1.22 8.09 -51.92 -0.42 0.80 15 29 H 0.08 1.61 8.14 -51.93 -0.42 1.19 15 LS Contribution 297.72 15.07 4.49 4.49 Total: -1.00 -27.30 297.72 -8.49 -35.79 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -2.33 Total: -0.52 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.66 Total: -6.88 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.82 Total: -46.66 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.30 Total: -0.39 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.48 Total: -1.43 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.30 -8.49 -35.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381596447.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.952 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds