Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 S 1.75941 * 125.19888 * 16.04754 * 3 2 1 5 5 C 1.76006 * 90.68883 * 180.02562 * 4 3 2 6 6 N 1.30860 * 125.48018 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.53007 * 109.46827 * 118.57141 * 7 6 5 9 9 C 1.50708 * 115.54833 * 320.33953 * 8 7 6 10 10 H 1.08004 * 119.99532 * 99.41116 * 9 8 7 11 11 C 1.37877 * 119.99941 * 279.41046 * 9 8 7 12 12 N 1.31510 * 120.00216 * 355.03126 * 11 9 8 13 13 Si 1.86800 * 119.99643 * 175.03441 * 11 9 8 14 14 H 1.48497 * 109.47075 * 89.99815 * 13 11 9 15 15 H 1.48497 * 109.47185 * 209.99815 * 13 11 9 16 16 H 1.48496 * 109.47227 * 329.99948 * 13 11 9 17 17 C 1.52998 * 117.49969 * 174.67258 * 8 7 6 18 18 C 1.52998 * 60.02908 * 252.49694 * 17 8 7 19 19 N 1.35951 * 109.03930 * 0.26479 * 5 4 3 20 20 H 0.97001 * 122.50684 * 179.73628 * 19 5 4 21 21 C 1.33687 * 125.19234 * 196.08813 * 3 2 1 22 22 Cl 1.73597 * 122.15636 * 359.97438 * 21 3 2 23 23 H 1.08999 * 109.47236 * 358.57697 * 7 6 5 24 24 H 1.08994 * 109.47505 * 238.56761 * 7 6 5 25 25 H 0.96998 * 120.00253 * 179.97438 * 12 11 9 26 26 H 1.09003 * 117.49421 * 359.97438 * 17 8 7 27 27 H 1.08996 * 117.50087 * 144.99528 * 17 8 7 28 28 H 1.09009 * 117.49993 * 107.50311 * 18 17 8 29 29 H 1.08996 * 117.50172 * 252.51711 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5827 -1.3806 -0.3974 5 6 5.0326 -0.4219 -0.1210 6 7 6.2624 -0.8519 -0.2440 7 6 6.5172 -2.2383 -0.6431 8 6 7.2861 -2.2551 -1.9658 9 6 6.8554 -1.2280 -2.9811 10 1 7.4173 -0.3127 -3.0951 11 6 5.7440 -1.4569 -3.7644 12 7 5.1172 -2.6109 -3.6955 13 14 5.1287 -0.1276 -4.9236 14 1 5.7857 -0.2814 -6.2464 15 1 3.6577 -0.2527 -5.0840 16 1 5.4535 1.2082 -4.3620 17 6 7.7592 -3.6121 -2.4907 18 6 8.7718 -2.6198 -1.9155 19 7 4.6694 0.8355 0.2471 20 1 5.3185 1.5268 0.4513 21 6 3.3380 1.0507 0.3028 22 17 2.6687 2.5899 0.7461 23 1 5.5687 -2.7607 -0.7676 24 1 7.1075 -2.7353 0.1266 25 1 4.3352 -2.7718 -4.2463 26 1 7.5231 -4.4928 -1.8935 27 1 7.7590 -3.7620 -3.5703 28 1 9.2016 -2.8478 -0.9400 29 1 9.4376 -2.1167 -2.6167 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381596447.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = 87.152906 kcal Electronic energy + Delta-G solvation = -17240.625917 eV Core-core repulsion = 14317.274782 eV Total energy + Delta-G solvation = -2923.351135 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17030 -38.72997 -38.13200 -37.74095 -35.41529 -33.90283 -32.02090 -28.32890 -27.26924 -24.60698 -23.90769 -22.81798 -21.03031 -19.84000 -18.79766 -18.08861 -17.80775 -16.66013 -16.58045 -16.10239 -16.01246 -15.35272 -15.08391 -14.53763 -14.37279 -14.00913 -13.81333 -13.40673 -13.25706 -12.92969 -12.87102 -12.80677 -12.41343 -12.22070 -11.95758 -11.69668 -11.04399 -10.88716 -10.73371 -10.49032 -10.32635 -9.69954 -8.29954 -8.01892 -6.08517 -0.35434 -0.27664 0.07366 0.73450 1.13285 1.37257 1.43592 1.47893 1.72114 1.82509 2.07156 2.45931 2.85960 3.28424 3.50518 3.69980 4.07077 4.43625 4.53557 4.78007 4.81147 4.96338 5.07649 5.14060 5.32682 5.61957 5.70971 5.80890 5.86462 6.26655 6.50766 6.73870 6.92120 7.57177 9.05181 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.006576 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.684509 B = 4256.937964 C = 4653.103971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.312 3.688 3 C -0.205 4.205 4 S 0.076 5.924 5 C 0.336 3.664 6 N -0.504 5.504 7 C 0.111 3.889 8 C 0.025 3.975 9 C -0.492 4.492 10 H 0.039 0.961 11 C 0.050 3.950 12 N -0.886 5.886 13 Si 0.910 3.090 14 H -0.282 1.282 15 H -0.283 1.283 16 H -0.273 1.273 17 C -0.157 4.157 18 C -0.188 4.188 19 N -0.584 5.584 20 H 0.445 0.555 21 C 0.258 3.742 22 Cl 0.040 6.960 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.258 0.742 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 6.822 10.221 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.003 4.003 3 C -0.333 4.333 4 S 0.313 5.687 5 C -0.052 4.052 6 N -0.231 5.231 7 C -0.020 4.020 8 C 0.024 3.976 9 C -0.530 4.530 10 H 0.057 0.943 11 C -0.152 4.152 12 N -0.523 5.523 13 Si 0.737 3.263 14 H -0.208 1.208 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.195 4.195 18 C -0.225 4.225 19 N -0.208 5.208 20 H 0.289 0.711 21 C 0.105 3.895 22 Cl 0.069 6.931 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.136 5.704 9.862 11.817 hybrid contribution -0.062 1.812 -0.777 1.973 sum -3.198 7.516 9.085 12.217 Atomic orbital electron populations 1.81245 1.11217 1.07322 1.10884 1.23654 0.90196 0.93752 0.92708 1.18240 0.89787 0.99457 1.25841 1.86391 0.94586 1.09244 1.78434 1.24032 0.93725 0.88474 0.98940 1.71374 1.12524 1.17870 1.21287 1.21615 0.99044 0.84896 0.96399 1.18868 0.91212 0.94880 0.92614 1.20334 1.11283 1.02661 1.18763 0.94317 1.25215 0.96763 0.95991 0.97221 1.70012 1.19823 1.22289 1.40145 0.86299 0.77907 0.81574 0.80488 1.20789 1.20881 1.19762 1.22465 1.04651 0.93602 0.98759 1.23037 0.93534 1.04847 1.01102 1.40861 1.04614 1.11782 1.63583 0.71087 1.19574 0.83512 0.89524 0.96869 1.98487 1.82009 1.22685 1.89962 0.94304 0.89999 0.93232 0.90484 0.92173 0.88986 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -13.70 18.54 19.00 0.35 -13.35 15 2 C 0.31 9.34 15.18 88.33 1.34 10.68 15 3 C -0.21 -5.95 6.22 22.48 0.14 -5.81 15 4 S 0.08 2.61 21.38 -56.49 -1.21 1.41 15 5 C 0.34 11.41 8.35 179.87 1.50 12.91 15 6 N -0.50 -19.31 9.97 -348.02 -3.47 -22.78 15 7 C 0.11 4.54 6.42 86.38 0.55 5.09 15 8 C 0.03 1.16 1.77 -52.90 -0.09 1.06 15 9 C -0.49 -25.25 8.14 25.60 0.21 -25.04 15 10 H 0.04 2.08 7.82 -2.91 -0.02 2.06 15 11 C 0.05 2.58 5.44 84.66 0.46 3.04 15 12 N -0.89 -46.58 12.86 21.45 0.28 -46.30 15 13 Si 0.91 41.86 29.54 68.60 2.03 43.89 15 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 17 C -0.16 -6.85 9.43 30.59 0.29 -6.56 15 18 C -0.19 -7.59 9.89 30.62 0.30 -7.28 15 19 N -0.58 -15.06 5.58 -188.16 -1.05 -16.11 15 20 H 0.45 8.95 8.96 -92.71 -0.83 8.12 15 21 C 0.26 6.33 7.35 83.17 0.61 6.94 15 22 Cl 0.04 0.75 28.61 -2.72 -0.08 0.68 15 23 H 0.04 1.68 6.20 -2.39 -0.01 1.67 15 24 H 0.08 2.97 7.95 -2.39 -0.02 2.96 15 25 H 0.26 13.33 8.31 -92.71 -0.77 12.56 15 26 H 0.08 3.09 8.14 -2.39 -0.02 3.07 15 27 H 0.06 2.90 8.14 -2.39 -0.02 2.88 15 28 H 0.09 3.20 8.09 -2.38 -0.02 3.18 15 29 H 0.07 2.92 8.14 -2.39 -0.02 2.90 15 Total: -1.00 -56.85 297.72 2.55 -54.30 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 0.39 Total: 3.25 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 5.31 Total: -4.96 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -3.89 Total: -98.55 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.21 Total: 1.41 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.68 kcal Total: -56.85 2.55 -54.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381596447.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.450 kcal (2) G-P(sol) polarization free energy of solvation -56.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds