Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00106 * 2 1 4 4 H 1.48506 * 109.46820 * 240.00021 * 3 2 1 5 5 H 1.48505 * 109.46687 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47188 * 119.99919 * 3 2 1 7 7 C 1.37881 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99541 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99889 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46619 * 179.97438 * 11 10 9 13 13 S 1.81009 * 109.46763 * 179.97438 * 12 11 10 14 14 C 1.76192 * 99.99926 * 179.97438 * 13 12 11 15 15 N 1.32520 * 119.84184 * 0.28733 * 14 13 12 16 16 C 1.31813 * 121.77302 * 180.33456 * 15 14 13 17 17 C 1.38423 * 121.24265 * 359.66005 * 16 15 14 18 18 C 1.38312 * 119.53299 * 0.02562 * 17 16 15 19 19 C 1.40047 * 118.36785 * 0.02562 * 18 17 16 20 20 C 1.47233 * 120.61921 * 180.02562 * 19 18 17 21 21 O 1.21533 * 120.00211 * 179.97438 * 20 19 18 22 22 O 1.34778 * 119.99787 * 359.97438 * 20 19 18 23 23 H 0.96999 * 120.00387 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47124 * 60.00106 * 9 7 2 25 25 H 1.09000 * 109.47271 * 299.99973 * 9 7 2 26 26 H 1.08995 * 109.47236 * 59.99886 * 11 10 9 27 27 H 1.08997 * 109.47073 * 299.99556 * 11 10 9 28 28 H 1.08995 * 109.47274 * 60.00075 * 12 11 10 29 29 H 1.08997 * 109.47171 * 299.99662 * 12 11 10 30 30 H 1.08002 * 119.37781 * 179.68073 * 16 15 14 31 31 H 1.08003 * 120.23498 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.81744 * 180.02562 * 18 17 16 33 33 H 0.96700 * 117.00264 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0027 11 6 1.5650 -4.8754 0.0032 12 6 2.6481 -5.9562 0.0036 13 16 1.8697 -7.5903 0.0051 14 6 3.3046 -8.6127 0.0045 15 7 4.5087 -8.0592 0.0091 16 6 5.6074 -8.7875 0.0023 17 6 5.5519 -10.1706 -0.0029 18 6 4.3222 -10.8036 -0.0015 19 6 3.1666 -10.0125 0.0046 20 6 1.8321 -10.6345 0.0069 21 8 0.8367 -9.9372 0.0128 22 8 1.7143 -11.9771 0.0026 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 0.9452 -4.9830 -0.8868 27 1 0.9447 -4.9819 0.8931 28 1 3.2683 -5.8488 0.8935 29 1 3.2681 -5.8495 -0.8865 30 1 6.5690 -8.2957 0.0011 31 1 6.4625 -10.7513 -0.0089 32 1 4.2548 -11.8815 -0.0051 33 1 2.5343 -12.4897 -0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385232194.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -98.845232 kcal Electronic energy + Delta-G solvation = -18572.982904 eV Core-core repulsion = 15304.397463 eV Total energy + Delta-G solvation = -3268.585441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01836 -39.44042 -36.90789 -36.79659 -33.22255 -32.82107 -31.89577 -30.83148 -27.01505 -25.57263 -24.32289 -22.85630 -22.29783 -21.94416 -19.45698 -18.03019 -17.31340 -16.39290 -16.09462 -16.08613 -15.95481 -15.38750 -15.38038 -14.66028 -14.49125 -14.39334 -13.81315 -13.59857 -13.27564 -12.99937 -12.53266 -11.94029 -11.92309 -11.36610 -11.21350 -10.86580 -10.77440 -10.69092 -10.59035 -10.12151 -10.08035 -10.06121 -9.81370 -9.12372 -8.85131 -8.20016 -7.76421 -6.10336 -4.12629 0.02989 0.59896 1.30386 2.18844 2.20595 2.86587 3.22615 3.33043 3.35480 3.39528 3.87986 4.00505 4.19575 4.36137 4.44695 4.59319 4.88545 4.94770 5.18401 5.25784 5.28505 5.43614 5.68767 5.85048 5.94290 6.15971 6.26753 6.81652 7.09179 7.26017 7.29934 7.41874 7.78795 8.13818 8.53687 8.99527 9.51932 11.01154 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.033441 B = 0.002969 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.095707 B = 9429.834570 C =10241.173599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.079 3.921 12 C -0.139 4.139 13 S 0.054 5.946 14 C 0.167 3.833 15 N -0.488 5.488 16 C 0.159 3.841 17 C -0.197 4.197 18 C -0.022 4.022 19 C -0.233 4.233 20 C 0.534 3.466 21 O -0.432 6.432 22 O -0.502 6.502 23 H 0.265 0.735 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.168 0.832 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.969 -26.573 -0.029 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.312 6.312 11 C 0.000 4.000 12 C -0.287 4.287 13 S 0.301 5.699 14 C -0.082 4.082 15 N -0.201 5.201 16 C -0.004 4.004 17 C -0.222 4.222 18 C -0.049 4.049 19 C -0.246 4.246 20 C 0.373 3.627 21 O -0.317 6.317 22 O -0.312 6.312 23 H 0.075 0.925 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.185 0.815 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 8.641 -25.122 -0.015 26.567 hybrid contribution 2.181 -0.067 -0.007 2.182 sum 10.823 -25.189 -0.022 27.416 Atomic orbital electron populations 1.69951 1.06114 1.27348 1.50275 1.24956 0.94995 0.99443 0.95077 0.86371 0.79294 0.81807 0.78849 1.19987 1.21116 1.19982 1.21012 0.94066 0.89271 1.51200 0.91524 1.20251 0.88758 0.83258 0.95650 1.87861 1.35587 1.12445 1.95276 1.21809 0.93049 0.85000 1.00183 1.23795 1.02474 0.94804 1.07663 1.86935 1.00953 0.96577 1.85412 1.23723 0.97716 0.93297 0.93423 1.68358 0.97245 1.39154 1.15312 1.23181 0.97145 0.91237 0.88842 1.21988 0.98496 0.96156 1.05521 1.21591 0.91622 0.99799 0.91871 1.20788 0.94824 0.94220 1.14805 1.19921 0.88185 0.80507 0.74059 1.90879 1.39772 1.57404 1.43629 1.84635 1.40621 1.19231 1.86714 0.92527 0.97465 0.97480 0.93625 0.93616 0.88329 0.88339 0.81498 0.83648 0.83891 0.73331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -15.57 9.43 -34.44 -0.32 -15.89 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.20 5.53 5.69 36.01 0.20 5.73 16 10 O -0.39 -9.87 10.33 -35.23 -0.36 -10.23 16 11 C 0.08 1.57 5.94 37.16 0.22 1.79 16 12 C -0.14 -2.34 5.21 37.16 0.19 -2.15 16 13 S 0.05 0.81 18.99 -107.50 -2.04 -1.23 16 14 C 0.17 2.15 7.02 -16.34 -0.11 2.03 16 15 N -0.49 -5.97 9.13 -11.66 -0.11 -6.08 16 16 C 0.16 1.28 11.16 -17.49 -0.20 1.09 16 17 C -0.20 -1.04 10.09 -39.49 -0.40 -1.44 16 18 C -0.02 -0.12 9.61 -38.88 -0.37 -0.49 16 19 C -0.23 -2.28 5.91 -104.65 -0.62 -2.90 16 20 C 0.53 5.83 8.33 34.39 0.29 6.12 16 21 O -0.43 -6.57 14.64 -19.29 -0.28 -6.85 16 22 O -0.50 -3.72 13.48 -40.70 -0.55 -4.26 16 23 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 1.67 8.12 -51.92 -0.42 1.25 16 29 H 0.10 1.67 8.13 -51.92 -0.42 1.25 16 30 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 32 H 0.14 0.05 6.45 -52.49 -0.34 -0.29 16 33 H 0.41 0.33 6.95 45.56 0.32 0.65 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -37.06 309.02 -7.13 -44.20 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: -2.95 Total: -6.19 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.22 Total: -4.54 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.63 Total: -32.65 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -1.20 Total: -21.34 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.04 Total: -1.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -37.06 -7.13 -44.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385232194.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.647 kcal (2) G-P(sol) polarization free energy of solvation -37.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds