Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00106 * 2 1 4 4 H 1.48506 * 109.46820 * 240.00021 * 3 2 1 5 5 H 1.48505 * 109.46687 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47188 * 119.99919 * 3 2 1 7 7 C 1.37881 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99541 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99889 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46619 * 179.97438 * 11 10 9 13 13 S 1.81009 * 109.46763 * 179.97438 * 12 11 10 14 14 C 1.76192 * 99.99926 * 179.97438 * 13 12 11 15 15 N 1.32520 * 119.84184 * 0.28733 * 14 13 12 16 16 C 1.31813 * 121.77302 * 180.33456 * 15 14 13 17 17 C 1.38423 * 121.24265 * 359.66005 * 16 15 14 18 18 C 1.38312 * 119.53299 * 0.02562 * 17 16 15 19 19 C 1.40047 * 118.36785 * 0.02562 * 18 17 16 20 20 C 1.47233 * 120.61921 * 180.02562 * 19 18 17 21 21 O 1.21533 * 120.00211 * 179.97438 * 20 19 18 22 22 O 1.34778 * 119.99787 * 359.97438 * 20 19 18 23 23 H 0.96999 * 120.00387 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47124 * 60.00106 * 9 7 2 25 25 H 1.09000 * 109.47271 * 299.99973 * 9 7 2 26 26 H 1.08995 * 109.47236 * 59.99886 * 11 10 9 27 27 H 1.08997 * 109.47073 * 299.99556 * 11 10 9 28 28 H 1.08995 * 109.47274 * 60.00075 * 12 11 10 29 29 H 1.08997 * 109.47171 * 299.99662 * 12 11 10 30 30 H 1.08002 * 119.37781 * 179.68073 * 16 15 14 31 31 H 1.08003 * 120.23498 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.81744 * 180.02562 * 18 17 16 33 33 H 0.96700 * 117.00264 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0027 11 6 1.5650 -4.8754 0.0032 12 6 2.6481 -5.9562 0.0036 13 16 1.8697 -7.5903 0.0051 14 6 3.3046 -8.6127 0.0045 15 7 4.5087 -8.0592 0.0091 16 6 5.6074 -8.7875 0.0023 17 6 5.5519 -10.1706 -0.0029 18 6 4.3222 -10.8036 -0.0015 19 6 3.1666 -10.0125 0.0046 20 6 1.8321 -10.6345 0.0069 21 8 0.8367 -9.9372 0.0128 22 8 1.7143 -11.9771 0.0026 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 0.9452 -4.9830 -0.8868 27 1 0.9447 -4.9819 0.8931 28 1 3.2683 -5.8488 0.8935 29 1 3.2681 -5.8495 -0.8865 30 1 6.5690 -8.2957 0.0011 31 1 6.4625 -10.7513 -0.0089 32 1 4.2548 -11.8815 -0.0051 33 1 2.5343 -12.4897 -0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385232194.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -126.569956 kcal Electronic energy + Delta-G solvation = -18574.185138 eV Core-core repulsion = 15304.397463 eV Total energy + Delta-G solvation = -3269.787675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.74227 -40.18562 -38.79632 -37.66963 -35.06448 -33.86918 -32.61849 -32.42628 -29.21125 -26.33242 -24.99592 -24.67337 -24.01309 -22.88917 -20.14066 -18.91063 -18.56144 -18.05446 -17.73493 -17.16751 -16.84120 -16.77681 -16.55798 -16.19775 -15.35653 -15.30663 -15.22917 -14.76822 -14.67575 -14.19906 -13.81828 -13.32801 -13.04455 -12.95586 -12.69901 -12.60921 -12.58467 -12.21124 -12.01679 -11.38711 -11.25084 -10.96042 -10.94934 -10.89167 -10.67966 -10.36698 -8.82598 -8.35464 -6.49514 -0.66042 0.02339 0.29071 1.03351 1.38518 1.44144 1.44963 1.52773 2.17440 2.33092 2.57583 2.98000 3.16583 3.35075 3.52325 3.59454 3.79390 3.90697 3.99411 4.12032 4.26399 4.41271 4.58489 4.67885 4.75279 4.85417 4.94824 5.08770 5.45342 5.49779 5.88642 6.20556 6.41480 6.58652 6.71743 6.76175 7.22055 8.76962 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.033441 B = 0.002969 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.095707 B = 9429.834570 C =10241.173599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.207 3.793 10 O -0.405 6.405 11 C 0.074 3.926 12 C -0.119 4.119 13 S 0.011 5.989 14 C 0.142 3.858 15 N -0.525 5.525 16 C 0.141 3.859 17 C -0.170 4.170 18 C -0.006 4.006 19 C -0.237 4.237 20 C 0.540 3.460 21 O -0.488 6.488 22 O -0.496 6.496 23 H 0.273 0.727 24 H -0.011 1.011 25 H -0.011 1.011 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.191 0.809 31 H 0.195 0.805 32 H 0.204 0.796 33 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.977 -28.861 -0.042 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.082 0.918 9 C 0.132 3.868 10 O -0.325 6.325 11 C -0.005 4.005 12 C -0.267 4.267 13 S 0.257 5.743 14 C -0.107 4.107 15 N -0.239 5.239 16 C -0.021 4.021 17 C -0.193 4.193 18 C -0.032 4.032 19 C -0.249 4.249 20 C 0.382 3.618 21 O -0.376 6.376 22 O -0.310 6.310 23 H 0.081 0.919 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.208 0.792 31 H 0.212 0.788 32 H 0.221 0.779 33 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 11.717 -27.491 -0.028 29.883 hybrid contribution 1.397 0.311 -0.004 1.431 sum 13.114 -27.180 -0.032 30.178 Atomic orbital electron populations 1.70068 1.07878 1.28941 1.50036 1.26037 0.96029 1.03573 0.93635 0.85163 0.78053 0.76259 0.79490 1.18850 1.19785 1.18845 1.21355 0.94231 0.90612 1.52987 0.91756 1.19918 0.88665 0.84380 0.93812 1.87809 1.35605 1.13823 1.95283 1.22035 0.94416 0.83610 1.00392 1.23442 1.01021 0.95351 1.06855 1.87005 1.03791 0.95747 1.87776 1.23422 0.96862 0.93850 0.96533 1.68225 0.98006 1.41015 1.16613 1.23799 0.96696 0.93092 0.88514 1.22562 1.00306 0.95025 1.01432 1.22290 0.89622 1.02348 0.88959 1.20880 0.95903 0.93141 1.15015 1.20082 0.87925 0.81278 0.72558 1.90847 1.41454 1.59018 1.46311 1.84596 1.43031 1.17610 1.85727 0.91856 0.99325 0.99345 0.93371 0.93371 0.89039 0.89035 0.79182 0.78799 0.77871 0.69938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 2 C 0.01 0.35 5.46 84.66 0.46 0.82 16 3 Si 0.99 45.34 29.54 68.60 2.03 47.36 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -34.39 9.43 25.60 0.24 -34.14 16 8 H 0.06 3.91 7.81 -2.91 -0.02 3.89 16 9 C 0.21 12.39 5.69 71.24 0.41 12.80 16 10 O -0.40 -21.58 10.33 -148.98 -1.54 -23.12 16 11 C 0.07 3.17 5.94 71.98 0.43 3.60 16 12 C -0.12 -4.31 5.21 71.98 0.37 -3.93 16 13 S 0.01 0.38 18.99 -56.49 -1.07 -0.70 16 14 C 0.14 3.67 7.02 85.18 0.60 4.27 16 15 N -0.53 -12.68 9.13 -190.80 -1.74 -14.42 16 16 C 0.14 1.87 11.16 84.74 0.95 2.82 16 17 C -0.17 -0.87 10.09 22.33 0.23 -0.64 16 18 C -0.01 -0.03 9.61 22.73 0.22 0.19 16 19 C -0.24 -4.16 5.91 -19.88 -0.12 -4.28 16 20 C 0.54 11.24 8.33 70.19 0.58 11.82 16 21 O -0.49 -15.41 14.64 19.73 0.29 -15.12 16 22 O -0.50 -5.87 13.48 -56.89 -0.77 -6.64 16 23 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 24 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.09 3.35 8.12 -2.40 -0.02 3.33 16 29 H 0.09 3.34 8.13 -2.40 -0.02 3.32 16 30 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.19 -0.77 8.06 -2.91 -0.02 -0.80 16 32 H 0.20 -1.46 6.45 -2.91 -0.02 -1.48 16 33 H 0.44 -1.56 6.95 -74.06 -0.51 -2.08 16 Total: -1.00 -87.09 309.02 2.48 -84.61 By element: Atomic # 1 Polarization: -8.62 SS G_CDS: 0.63 Total: -7.99 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 4.37 Total: -6.69 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -1.46 Total: -71.71 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -2.02 Total: -44.88 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.07 Total: -0.70 kcal Total: -87.09 2.48 -84.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385232194.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.960 kcal (2) G-P(sol) polarization free energy of solvation -87.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds