Wall clock time and date at job start Tue Mar 31 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48502 * 109.47323 * 240.00163 * 3 2 1 5 5 H 1.48502 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47396 * 119.99750 * 3 2 1 7 7 C 1.37871 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00127 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00048 * 359.97438 * 7 2 1 10 10 S 1.81403 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.81403 * 103.00025 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46717 * 180.02562 * 11 10 9 13 13 N 1.29020 * 124.91669 * 90.00383 * 12 11 10 14 14 C 1.31785 * 117.12283 * 179.97438 * 13 12 11 15 15 C 1.50703 * 122.74868 * 179.97438 * 14 13 12 16 16 F 1.39905 * 109.47157 * 5.02384 * 15 14 13 17 17 F 1.39900 * 109.47159 * 245.02684 * 15 14 13 18 18 F 1.39897 * 109.47274 * 125.02376 * 15 14 13 19 19 C 1.33634 * 114.50259 * 0.23300 * 14 13 12 20 20 S 1.70979 * 124.91332 * 269.99572 * 12 11 10 21 21 H 0.96999 * 120.00626 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47176 * 60.00513 * 9 7 2 23 23 H 1.08995 * 109.47455 * 300.00555 * 9 7 2 24 24 H 1.08995 * 109.46652 * 60.00184 * 11 10 9 25 25 H 1.08996 * 109.46760 * 299.99728 * 11 10 9 26 26 H 1.08001 * 126.03876 * 179.77577 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 16 2.4300 -3.8778 0.0029 11 6 1.3517 -5.3366 0.0034 12 6 2.1958 -6.5851 0.0051 13 7 2.6087 -7.1960 1.0639 14 6 3.3397 -8.2781 0.8866 15 6 3.8879 -9.0884 2.0329 16 9 3.4027 -8.5754 3.2407 17 9 5.2853 -9.0208 2.0255 18 9 3.4847 -10.4210 1.8969 19 6 3.5596 -8.5949 -0.3929 20 16 2.7448 -7.3970 -1.3958 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 0.7230 -5.3239 -0.8868 25 1 0.7224 -5.3228 0.8932 26 1 4.1338 -9.4373 -0.7492 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413008949.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:20 Heat of formation + Delta-G solvation = -112.872672 kcal Electronic energy + Delta-G solvation = -16819.728606 eV Core-core repulsion = 13315.597926 eV Total energy + Delta-G solvation = -3504.130680 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.001 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.28358 -47.83840 -47.70883 -40.10229 -33.22047 -32.86433 -28.96601 -28.52145 -27.11106 -23.61586 -22.81295 -20.36534 -19.32120 -18.69593 -18.31297 -16.93374 -16.61407 -15.74504 -15.34279 -14.91283 -14.67378 -14.50510 -14.22999 -14.20295 -13.94177 -13.87706 -13.84293 -13.15994 -12.88490 -12.65897 -12.37830 -12.02577 -11.73489 -10.89320 -10.86160 -10.34688 -9.99191 -9.73960 -9.67965 -9.22630 -8.99126 -8.66869 -6.86623 -6.25518 -4.30492 0.19728 0.91085 1.28597 1.91017 2.41847 2.70623 3.25354 3.28685 3.32694 3.36789 3.62912 3.87770 4.21582 4.24892 4.31048 4.76367 4.85517 5.11920 5.16523 5.47369 5.70567 6.98005 7.01055 7.28297 7.68313 7.92124 8.70770 9.33116 10.85553 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.032087 B = 0.003572 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.426049 B = 7836.848865 C = 8181.384992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.091 3.909 10 S -0.273 6.273 11 C -0.030 4.030 12 C 0.088 3.912 13 N -0.440 5.440 14 C -0.018 4.018 15 C 0.547 3.453 16 F -0.160 7.160 17 F -0.171 7.171 18 F -0.173 7.173 19 C -0.220 4.220 20 S 0.206 5.794 21 H 0.267 0.733 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 -18.954 -2.008 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.086 0.914 9 C -0.056 4.056 10 S -0.048 6.048 11 C -0.180 4.180 12 C -0.191 4.191 13 N -0.154 5.154 14 C -0.154 4.154 15 C 0.489 3.511 16 F -0.141 7.141 17 F -0.152 7.152 18 F -0.154 7.154 19 C -0.362 4.362 20 S 0.464 5.536 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 5.322 -18.428 -2.566 19.352 hybrid contribution -0.489 0.222 0.940 1.083 sum 4.833 -18.206 -1.625 18.907 Atomic orbital electron populations 1.69930 1.06134 1.27613 1.49276 1.24947 0.94995 0.99272 0.94494 0.86386 0.79400 0.81709 0.79025 1.19871 1.21002 1.19837 1.20585 0.93478 0.88537 1.52853 0.91447 1.21146 0.93604 0.90377 1.00478 1.86999 1.19617 1.00088 1.98053 1.21854 0.98449 0.90836 1.06894 1.26357 1.01665 1.00406 0.90649 1.65810 1.11388 1.06136 1.32064 1.19891 1.05165 0.97734 0.92602 1.17231 0.75509 0.77078 0.81236 1.93249 1.87623 1.86633 1.46625 1.93235 1.29204 1.96167 1.96593 1.93216 1.90483 1.35864 1.95864 1.26936 1.07391 1.06152 0.95702 1.84160 1.42629 1.16025 1.10833 0.92325 0.94253 0.94175 0.88055 0.87172 0.79333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 13.29 55.43 0.74 -24.52 15 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 3 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.52 -14.12 9.13 -34.44 -0.31 -14.44 15 8 H 0.07 1.85 7.71 -52.49 -0.40 1.45 15 9 C 0.09 2.25 5.70 36.00 0.21 2.46 15 10 S -0.27 -5.69 21.64 -107.50 -2.33 -8.02 15 11 C -0.03 -0.47 6.52 36.01 0.23 -0.24 15 12 C 0.09 1.30 6.65 -13.46 -0.09 1.21 15 13 N -0.44 -6.99 10.14 -8.06 -0.08 -7.07 15 14 C -0.02 -0.24 6.16 -84.22 -0.52 -0.76 15 15 C 0.55 6.91 3.39 36.01 0.12 7.03 15 16 F -0.16 -2.31 17.01 2.25 0.04 -2.27 15 17 F -0.17 -2.10 17.30 2.25 0.04 -2.07 15 18 F -0.17 -1.96 17.22 2.25 0.04 -1.92 15 19 C -0.22 -2.30 11.05 29.12 0.32 -1.98 15 20 S 0.21 2.28 23.18 -107.50 -2.49 -0.22 15 21 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.04 0.99 8.14 -51.92 -0.42 0.57 15 23 H 0.04 1.04 8.14 -51.93 -0.42 0.61 15 24 H 0.10 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.11 1.75 8.14 -51.93 -0.42 1.33 15 26 H 0.19 1.32 8.06 -52.49 -0.42 0.89 15 LS Contribution 281.33 15.07 4.24 4.24 Total: -1.00 -29.33 281.33 -6.62 -35.95 By element: Atomic # 1 Polarization: -3.44 SS G_CDS: -1.65 Total: -5.10 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.14 Total: -4.97 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.65 Total: -31.59 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.12 Total: -6.25 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -4.82 Total: -8.24 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.33 -6.62 -35.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413008949.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.922 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds