Wall clock time and date at job start Tue Mar 31 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48502 * 109.47323 * 240.00163 * 3 2 1 5 5 H 1.48502 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47396 * 119.99750 * 3 2 1 7 7 C 1.37871 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00127 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00048 * 359.97438 * 7 2 1 10 10 S 1.81403 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.81403 * 103.00025 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46717 * 180.02562 * 11 10 9 13 13 N 1.29020 * 124.91669 * 90.00383 * 12 11 10 14 14 C 1.31785 * 117.12283 * 179.97438 * 13 12 11 15 15 C 1.50703 * 122.74868 * 179.97438 * 14 13 12 16 16 F 1.39905 * 109.47157 * 5.02384 * 15 14 13 17 17 F 1.39900 * 109.47159 * 245.02684 * 15 14 13 18 18 F 1.39897 * 109.47274 * 125.02376 * 15 14 13 19 19 C 1.33634 * 114.50259 * 0.23300 * 14 13 12 20 20 S 1.70979 * 124.91332 * 269.99572 * 12 11 10 21 21 H 0.96999 * 120.00626 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47176 * 60.00513 * 9 7 2 23 23 H 1.08995 * 109.47455 * 300.00555 * 9 7 2 24 24 H 1.08995 * 109.46652 * 60.00184 * 11 10 9 25 25 H 1.08996 * 109.46760 * 299.99728 * 11 10 9 26 26 H 1.08001 * 126.03876 * 179.77577 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 16 2.4300 -3.8778 0.0029 11 6 1.3517 -5.3366 0.0034 12 6 2.1958 -6.5851 0.0051 13 7 2.6087 -7.1960 1.0639 14 6 3.3397 -8.2781 0.8866 15 6 3.8879 -9.0884 2.0329 16 9 3.4027 -8.5754 3.2407 17 9 5.2853 -9.0208 2.0255 18 9 3.4847 -10.4210 1.8969 19 6 3.5596 -8.5949 -0.3929 20 16 2.7448 -7.3970 -1.3958 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 0.7230 -5.3239 -0.8868 25 1 0.7224 -5.3228 0.8932 26 1 4.1338 -9.4373 -0.7492 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413008949.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:20 Heat of formation + Delta-G solvation = -129.989936 kcal Electronic energy + Delta-G solvation = -16820.470866 eV Core-core repulsion = 13315.597926 eV Total energy + Delta-G solvation = -3504.872940 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.001 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.25733 -48.77496 -48.73463 -41.12739 -35.29574 -33.94397 -30.72017 -29.95834 -28.05371 -25.36411 -24.18519 -21.38995 -20.32748 -19.65934 -19.30605 -18.65562 -17.86522 -17.34629 -16.67040 -16.27218 -15.83655 -15.51489 -15.49407 -15.17214 -15.11667 -14.88886 -14.88159 -14.52755 -14.47177 -14.24201 -13.98737 -13.58133 -12.71999 -12.65910 -12.63320 -12.18986 -11.66563 -11.02725 -10.87827 -10.73939 -10.63129 -10.21533 -8.55840 -8.33368 -6.46351 -0.79238 -0.00497 0.29921 0.65707 1.39896 1.43526 1.43946 1.47027 1.53583 1.89296 2.37108 2.38682 2.89053 3.01767 3.16329 3.26203 3.81093 3.96741 4.06715 4.35389 4.53748 4.94512 4.95116 5.56577 5.87569 6.28387 6.60186 7.21664 8.78063 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.032087 B = 0.003572 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.426049 B = 7836.848865 C = 8181.384992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.094 3.906 10 S -0.288 6.288 11 C -0.014 4.014 12 C 0.044 3.956 13 N -0.468 5.468 14 C -0.050 4.050 15 C 0.551 3.449 16 F -0.175 7.175 17 F -0.169 7.169 18 F -0.164 7.164 19 C -0.193 4.193 20 S 0.278 5.722 21 H 0.271 0.729 22 H 0.027 0.973 23 H 0.017 0.983 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -20.129 -3.260 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.053 4.053 10 S -0.062 6.062 11 C -0.165 4.165 12 C -0.233 4.233 13 N -0.184 5.184 14 C -0.185 4.185 15 C 0.494 3.506 16 F -0.157 7.157 17 F -0.151 7.151 18 F -0.145 7.145 19 C -0.335 4.335 20 S 0.535 5.465 21 H 0.080 0.920 22 H 0.045 0.955 23 H 0.036 0.964 24 H 0.142 0.858 25 H 0.122 0.878 26 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.418 -19.604 -3.816 20.978 hybrid contribution -0.805 0.374 1.276 1.555 sum 5.613 -19.230 -2.540 20.192 Atomic orbital electron populations 1.70029 1.07546 1.28677 1.49845 1.25850 0.95870 1.02850 0.93794 0.85367 0.78253 0.77411 0.79266 1.18973 1.20104 1.19450 1.20921 0.93438 0.90168 1.53175 0.92060 1.20805 0.93927 0.91947 0.98663 1.86765 1.20112 1.01233 1.98085 1.21776 0.97752 0.89082 1.07868 1.26050 1.03621 1.00955 0.92704 1.65715 1.11826 1.07155 1.33672 1.19980 1.06602 0.98052 0.93838 1.17171 0.75466 0.77327 0.80649 1.93215 1.87865 1.86953 1.47623 1.93235 1.29076 1.96202 1.96545 1.93230 1.90405 1.35146 1.95761 1.27502 1.05208 1.06203 0.94611 1.83913 1.40592 1.14213 1.07787 0.92016 0.95497 0.96421 0.85794 0.87771 0.75374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.06 13.29 21.44 0.28 -52.77 15 2 C 0.02 0.97 5.46 84.65 0.46 1.44 15 3 Si 0.97 43.02 29.54 68.60 2.03 45.04 15 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 7 C -0.54 -30.11 9.13 25.60 0.23 -29.88 15 8 H 0.06 3.42 7.71 -2.91 -0.02 3.40 15 9 C 0.09 4.82 5.70 71.23 0.41 5.23 15 10 S -0.29 -12.12 21.64 -56.49 -1.22 -13.34 15 11 C -0.01 -0.45 6.52 71.24 0.46 0.01 15 12 C 0.04 1.25 6.65 88.52 0.59 1.84 15 13 N -0.47 -14.45 10.14 -179.40 -1.82 -16.27 15 14 C -0.05 -1.23 6.16 41.52 0.26 -0.97 15 15 C 0.55 13.15 3.39 71.24 0.24 13.39 15 16 F -0.18 -5.01 17.01 44.97 0.76 -4.24 15 17 F -0.17 -3.90 17.30 44.97 0.78 -3.12 15 18 F -0.16 -3.39 17.22 44.97 0.77 -2.61 15 19 C -0.19 -3.35 11.05 66.77 0.74 -2.62 15 20 S 0.28 5.26 23.18 -56.49 -1.31 3.95 15 21 H 0.27 14.59 8.31 -92.71 -0.77 13.81 15 22 H 0.03 1.40 8.14 -2.39 -0.02 1.39 15 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.12 3.29 8.14 -2.39 -0.02 3.27 15 25 H 0.10 3.38 8.14 -2.39 -0.02 3.36 15 26 H 0.23 1.98 8.06 -2.91 -0.02 1.96 15 Total: -1.00 -64.25 281.33 4.89 -59.36 By element: Atomic # 1 Polarization: -5.66 SS G_CDS: 1.23 Total: -4.43 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 3.39 Total: -11.57 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -1.53 Total: -69.04 kcal Atomic # 9 Polarization: -12.29 SS G_CDS: 2.32 Total: -9.97 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -6.86 SS G_CDS: -2.53 Total: -9.39 kcal Total: -64.25 4.89 -59.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413008949.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.633 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds