Wall clock time and date at job start Tue Mar 31 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99486 * 2 1 4 4 H 1.48502 * 109.46648 * 239.99839 * 3 2 1 5 5 H 1.48497 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47169 * 120.00212 * 3 2 1 7 7 C 1.37867 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00017 * 359.97438 * 7 2 1 10 10 S 1.81405 * 109.47227 * 179.97438 * 9 7 2 11 11 C 1.81396 * 103.00203 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47360 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.35900 * 117.00172 * 179.97438 * 13 12 11 15 15 C 1.38754 * 120.05449 * 359.72484 * 14 13 12 16 16 C 1.38115 * 119.94425 * 179.79159 * 15 14 13 17 17 C 1.38300 * 120.05459 * 0.48132 * 16 15 14 18 18 C 1.38241 * 120.10891 * 359.74513 * 17 16 15 19 19 N 1.48002 * 119.96786 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99925 * 180.02562 * 19 18 17 21 21 O 1.21805 * 120.00092 * 0.02562 * 19 18 17 22 22 C 1.38163 * 120.05816 * 0.02709 * 18 17 16 23 23 H 0.97001 * 120.00103 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46929 * 60.00513 * 9 7 2 25 25 H 1.08992 * 109.47783 * 300.00228 * 9 7 2 26 26 H 1.09002 * 109.47134 * 59.99960 * 11 10 9 27 27 H 1.08998 * 109.46953 * 300.00697 * 11 10 9 28 28 H 1.09002 * 109.47153 * 59.99820 * 12 11 10 29 29 H 1.09001 * 109.46832 * 300.00011 * 12 11 10 30 30 H 1.08006 * 120.02588 * 0.02562 * 15 14 13 31 31 H 1.08000 * 119.97746 * 180.22805 * 16 15 14 32 32 H 1.08000 * 119.93996 * 179.77075 * 17 16 15 33 33 H 1.07998 * 120.02969 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 16 2.4299 -3.8779 0.0014 11 6 1.3518 -5.3366 0.0021 12 6 2.2086 -6.6042 0.0026 13 8 1.3593 -7.7533 0.0025 14 6 1.9663 -8.9692 0.0024 15 6 3.3512 -9.0546 -0.0035 16 6 3.9658 -10.2914 0.0007 17 6 3.2019 -11.4444 0.0007 18 6 1.8220 -11.3620 0.0018 19 7 1.0076 -12.5978 0.0012 20 8 -0.2083 -12.5259 0.0017 21 8 1.5533 -13.6868 0.0003 22 6 1.2024 -10.1271 0.0024 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6248 -2.5563 0.8918 26 1 0.7222 -5.3236 -0.8876 27 1 0.7229 -5.3232 0.8923 28 1 2.8379 -6.6170 0.8925 29 1 2.8377 -6.6177 -0.8875 30 1 3.9481 -8.1544 -0.0075 31 1 5.0437 -10.3584 -0.0001 32 1 3.6844 -12.4106 0.0003 33 1 0.1243 -10.0633 0.0028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:46 Heat of formation + Delta-G solvation = -25.211566 kcal Electronic energy + Delta-G solvation = -18192.320299 eV Core-core repulsion = 14926.927854 eV Total energy + Delta-G solvation = -3265.392445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.45777 -40.67473 -38.10608 -36.82696 -33.26614 -32.45995 -32.21192 -30.19439 -28.67656 -27.00342 -24.28838 -23.39524 -23.03173 -21.90528 -19.90306 -18.93996 -17.80489 -17.57304 -16.84091 -16.65643 -16.54418 -16.29741 -15.34012 -14.74123 -14.48877 -14.13557 -14.09924 -12.97877 -12.94292 -12.68458 -12.48481 -12.35451 -12.20685 -11.84354 -11.65998 -11.40010 -11.39545 -11.16015 -10.91803 -10.83144 -10.17920 -10.06789 -9.72770 -9.11236 -8.98009 -8.71499 -6.94226 -6.29843 -4.35486 -0.51712 0.58253 1.02556 1.03013 1.99123 2.87292 3.07490 3.21074 3.25053 3.28388 3.61559 3.98683 4.21735 4.26283 4.30124 4.39101 4.53877 4.72776 4.74381 4.99037 5.07419 5.15298 5.29470 5.47889 5.53917 5.61468 5.63764 5.86036 6.10087 6.80326 6.94233 6.96560 7.35776 7.63334 7.87101 8.65790 9.28403 10.81254 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.053843 B = 0.002367 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.908539 B =11826.411129 C =12320.571197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.097 3.903 10 S -0.291 6.291 11 C -0.098 4.098 12 C 0.078 3.922 13 O -0.303 6.303 14 C 0.146 3.854 15 C -0.159 4.159 16 C -0.074 4.074 17 C -0.099 4.099 18 C -0.006 4.006 19 N 0.028 4.972 20 O -0.155 6.155 21 O -0.158 6.158 22 C -0.096 4.096 23 H 0.268 0.732 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 -20.053 0.003 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.086 0.914 9 C -0.050 4.050 10 S -0.066 6.066 11 C -0.246 4.246 12 C 0.003 3.997 13 O -0.216 6.216 14 C 0.098 3.902 15 C -0.178 4.178 16 C -0.093 4.093 17 C -0.119 4.119 18 C -0.089 4.089 19 N 0.549 4.451 20 O -0.372 6.372 21 O -0.374 6.374 22 C -0.116 4.116 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.587 -19.241 0.002 20.683 hybrid contribution -1.033 0.635 0.001 1.213 sum 6.554 -18.606 0.003 19.726 Atomic orbital electron populations 1.69938 1.06166 1.27680 1.49104 1.24964 0.95005 0.99338 0.94470 0.86373 0.79389 0.81678 0.79000 1.19847 1.20971 1.19843 1.20595 0.93455 0.88568 1.53046 0.91425 1.21103 0.93350 0.90092 1.00459 1.86538 1.20562 1.01311 1.98155 1.23113 1.01252 0.94195 1.06053 1.22708 0.92535 0.81722 1.02761 1.86137 1.36533 1.11530 1.87445 1.18605 0.90643 0.85736 0.95219 1.21880 0.93699 1.00332 1.01865 1.21012 1.00922 0.90230 0.97121 1.20966 0.90380 1.01419 0.99112 1.20698 0.91350 0.84145 1.12712 1.43562 1.01451 1.02550 0.97575 1.94569 0.95652 1.93936 1.53027 1.94536 1.74892 1.14673 1.53266 1.20093 1.02580 0.87775 1.01109 0.92269 0.94301 0.94298 0.89530 0.89535 0.90590 0.90603 0.83117 0.83098 0.82860 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.52 -13.98 9.13 -34.44 -0.31 -14.29 16 8 H 0.07 1.81 7.71 -52.48 -0.40 1.41 16 9 C 0.10 2.38 5.70 36.01 0.21 2.59 16 10 S -0.29 -5.73 21.66 -107.50 -2.33 -8.05 16 11 C -0.10 -1.48 6.31 37.16 0.23 -1.25 16 12 C 0.08 0.91 4.75 37.16 0.18 1.09 16 13 O -0.30 -3.57 10.14 -19.43 -0.20 -3.77 16 14 C 0.15 1.47 6.69 -39.22 -0.26 1.20 16 15 C -0.16 -1.24 9.04 -39.44 -0.36 -1.59 16 16 C -0.07 -0.47 10.04 -39.60 -0.40 -0.86 16 17 C -0.10 -0.77 9.55 -39.56 -0.38 -1.14 16 18 C -0.01 -0.06 6.85 -79.98 -0.55 -0.61 16 19 N 0.03 0.34 4.45 33.95 0.15 0.49 16 20 O -0.15 -2.03 18.45 -29.46 -0.54 -2.57 16 21 O -0.16 -1.93 18.44 -29.46 -0.54 -2.48 16 22 C -0.10 -0.98 9.49 -39.43 -0.37 -1.35 16 23 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 25 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 27 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 29 H 0.08 0.80 7.65 -51.93 -0.40 0.40 16 30 H 0.15 0.96 6.30 -52.48 -0.33 0.63 16 31 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.15 0.93 7.61 -52.49 -0.40 0.53 16 33 H 0.16 1.60 7.61 -52.49 -0.40 1.20 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -29.29 313.77 -8.71 -38.00 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.58 Total: -3.02 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.11 Total: -14.52 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.89 Total: -23.94 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -1.28 Total: -8.82 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -5.73 SS G_CDS: -2.33 Total: -8.05 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.29 -8.71 -38.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.788 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds