Wall clock time and date at job start Tue Mar 31 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99486 * 2 1 4 4 H 1.48502 * 109.46648 * 239.99839 * 3 2 1 5 5 H 1.48497 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47169 * 120.00212 * 3 2 1 7 7 C 1.37867 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00017 * 359.97438 * 7 2 1 10 10 S 1.81405 * 109.47227 * 179.97438 * 9 7 2 11 11 C 1.81396 * 103.00203 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47360 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.35900 * 117.00172 * 179.97438 * 13 12 11 15 15 C 1.38754 * 120.05449 * 359.72484 * 14 13 12 16 16 C 1.38115 * 119.94425 * 179.79159 * 15 14 13 17 17 C 1.38300 * 120.05459 * 0.48132 * 16 15 14 18 18 C 1.38241 * 120.10891 * 359.74513 * 17 16 15 19 19 N 1.48002 * 119.96786 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99925 * 180.02562 * 19 18 17 21 21 O 1.21805 * 120.00092 * 0.02562 * 19 18 17 22 22 C 1.38163 * 120.05816 * 0.02709 * 18 17 16 23 23 H 0.97001 * 120.00103 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46929 * 60.00513 * 9 7 2 25 25 H 1.08992 * 109.47783 * 300.00228 * 9 7 2 26 26 H 1.09002 * 109.47134 * 59.99960 * 11 10 9 27 27 H 1.08998 * 109.46953 * 300.00697 * 11 10 9 28 28 H 1.09002 * 109.47153 * 59.99820 * 12 11 10 29 29 H 1.09001 * 109.46832 * 300.00011 * 12 11 10 30 30 H 1.08006 * 120.02588 * 0.02562 * 15 14 13 31 31 H 1.08000 * 119.97746 * 180.22805 * 16 15 14 32 32 H 1.08000 * 119.93996 * 179.77075 * 17 16 15 33 33 H 1.07998 * 120.02969 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 16 2.4299 -3.8779 0.0014 11 6 1.3518 -5.3366 0.0021 12 6 2.2086 -6.6042 0.0026 13 8 1.3593 -7.7533 0.0025 14 6 1.9663 -8.9692 0.0024 15 6 3.3512 -9.0546 -0.0035 16 6 3.9658 -10.2914 0.0007 17 6 3.2019 -11.4444 0.0007 18 6 1.8220 -11.3620 0.0018 19 7 1.0076 -12.5978 0.0012 20 8 -0.2083 -12.5259 0.0017 21 8 1.5533 -13.6868 0.0003 22 6 1.2024 -10.1271 0.0024 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6248 -2.5563 0.8918 26 1 0.7222 -5.3236 -0.8876 27 1 0.7229 -5.3232 0.8923 28 1 2.8379 -6.6170 0.8925 29 1 2.8377 -6.6177 -0.8875 30 1 3.9481 -8.1544 -0.0075 31 1 5.0437 -10.3584 -0.0001 32 1 3.6844 -12.4106 0.0003 33 1 0.1243 -10.0633 0.0028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:45 Heat of formation + Delta-G solvation = -40.338679 kcal Electronic energy + Delta-G solvation = -18192.976260 eV Core-core repulsion = 14926.927854 eV Total energy + Delta-G solvation = -3266.048406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.33420 -41.44132 -38.87888 -37.75167 -35.31707 -33.33740 -32.99542 -31.02197 -30.70526 -27.82989 -25.67186 -24.64057 -24.03972 -22.82644 -20.71035 -19.83483 -18.70725 -18.69316 -18.33790 -17.50715 -17.45752 -17.26031 -16.92348 -16.25677 -15.28090 -15.21814 -14.96926 -14.56870 -14.31594 -14.18146 -13.68759 -13.56150 -13.21326 -12.80031 -12.72770 -12.62217 -12.53434 -12.36688 -12.25745 -12.06199 -12.01847 -11.62243 -10.83515 -10.75847 -10.70556 -9.70702 -8.55803 -8.35386 -6.49298 -1.33968 -0.05711 0.20814 0.22269 0.65238 1.41051 1.43582 1.52224 1.86979 2.12546 2.21999 2.36080 2.99976 3.36538 3.54362 3.56749 3.69733 3.73020 3.83711 3.94783 4.17792 4.35952 4.50120 4.64398 4.65143 4.86337 4.89955 4.91634 4.95591 5.01226 5.30879 5.54430 5.84207 6.01332 6.40521 6.58465 7.19553 8.76393 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.053843 B = 0.002367 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.908539 B =11826.411129 C =12320.571197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.091 3.909 10 S -0.276 6.276 11 C -0.091 4.091 12 C 0.087 3.913 13 O -0.320 6.320 14 C 0.128 3.872 15 C -0.148 4.148 16 C -0.059 4.059 17 C -0.089 4.089 18 C -0.023 4.023 19 N 0.030 4.970 20 O -0.199 6.199 21 O -0.151 6.151 22 C -0.109 4.109 23 H 0.271 0.729 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.172 0.828 31 H 0.194 0.806 32 H 0.174 0.826 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 -20.499 0.001 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.085 0.915 9 C -0.057 4.057 10 S -0.049 6.049 11 C -0.240 4.240 12 C 0.011 3.989 13 O -0.234 6.234 14 C 0.081 3.919 15 C -0.167 4.167 16 C -0.077 4.077 17 C -0.108 4.108 18 C -0.106 4.106 19 N 0.546 4.454 20 O -0.406 6.406 21 O -0.372 6.372 22 C -0.129 4.129 23 H 0.079 0.921 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.189 0.811 31 H 0.211 0.789 32 H 0.191 0.809 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.549 -19.685 0.001 22.333 hybrid contribution -1.889 0.620 0.001 1.988 sum 8.660 -19.064 0.002 20.939 Atomic orbital electron populations 1.70053 1.07777 1.28726 1.49905 1.25929 0.95859 1.03160 0.93760 0.85313 0.78172 0.77068 0.79436 1.18958 1.20418 1.18948 1.20954 0.93609 0.89971 1.53109 0.91491 1.20797 0.94111 0.92511 0.98271 1.86149 1.19532 1.01172 1.98094 1.23110 1.00988 0.93922 1.05949 1.22538 0.91657 0.80284 1.04388 1.86070 1.37079 1.12088 1.88210 1.18697 0.91741 0.84659 0.96813 1.22204 0.92569 1.01941 0.99986 1.21484 1.02718 0.88722 0.94817 1.21377 0.89154 1.03124 0.97143 1.20845 0.92087 0.82956 1.14703 1.43864 1.01446 1.03153 0.96968 1.94571 0.96564 1.94220 1.55264 1.94497 1.74686 1.15553 1.52427 1.20055 1.02407 0.88329 1.02131 0.92051 0.96529 0.96523 0.89740 0.89746 0.88949 0.88957 0.81101 0.78923 0.80874 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.30 13.29 21.44 0.28 -53.01 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.98 42.09 29.54 68.60 2.03 44.11 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.54 -29.40 9.13 25.60 0.23 -29.17 16 8 H 0.07 3.58 7.71 -2.91 -0.02 3.56 16 9 C 0.09 4.59 5.70 71.24 0.41 4.99 16 10 S -0.28 -10.65 21.66 -56.49 -1.22 -11.87 16 11 C -0.09 -2.68 6.31 71.98 0.45 -2.23 16 12 C 0.09 1.82 4.75 71.98 0.34 2.16 16 13 O -0.32 -7.14 10.14 -92.43 -0.94 -8.08 16 14 C 0.13 2.35 6.69 22.51 0.15 2.50 16 15 C -0.15 -1.75 9.04 22.36 0.20 -1.55 16 16 C -0.06 -0.47 10.04 22.26 0.22 -0.25 16 17 C -0.09 -1.08 9.55 22.29 0.21 -0.87 16 18 C -0.02 -0.44 6.85 36.36 0.25 -0.19 16 19 N 0.03 0.71 4.45 -46.51 -0.21 0.51 16 20 O -0.20 -5.48 18.45 18.88 0.35 -5.13 16 21 O -0.15 -3.59 18.44 18.88 0.35 -3.24 16 22 C -0.11 -2.21 9.49 22.37 0.21 -2.00 16 23 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.09 1.65 7.68 -2.39 -0.02 1.63 16 29 H 0.09 1.65 7.65 -2.39 -0.02 1.63 16 30 H 0.17 1.35 6.30 -2.91 -0.02 1.33 16 31 H 0.19 0.00 8.06 -2.91 -0.02 -0.02 16 32 H 0.17 1.43 7.61 -2.91 -0.02 1.41 16 33 H 0.15 3.22 7.61 -2.91 -0.02 3.20 16 Total: -1.00 -65.20 313.77 4.92 -60.29 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.13 Total: 1.80 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 3.15 Total: -25.37 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.08 Total: -52.50 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.24 Total: -16.45 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: -10.65 SS G_CDS: -1.22 Total: -11.87 kcal Total: -65.20 4.92 -60.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.950 kcal (2) G-P(sol) polarization free energy of solvation -65.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds