Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48492 * 109.47159 * 270.00033 * 3 2 1 5 5 H 1.48503 * 109.47058 * 29.99899 * 3 2 1 6 6 H 1.48503 * 109.47134 * 150.00040 * 3 2 1 7 7 C 1.37881 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00048 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00071 * 180.02562 * 7 2 1 10 10 S 1.81396 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.81406 * 102.99849 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46955 * 179.97438 * 11 10 9 13 13 O 1.42904 * 109.47009 * 179.97438 * 12 11 10 14 14 C 1.35898 * 116.99940 * 179.97438 * 13 12 11 15 15 C 1.38747 * 120.05546 * 0.02562 * 14 13 12 16 16 C 1.38125 * 119.94590 * 179.97438 * 15 14 13 17 17 C 1.38289 * 120.05159 * 359.97438 * 16 15 14 18 18 C 1.38243 * 120.11362 * 359.97438 * 17 16 15 19 19 C 1.38163 * 120.05442 * 0.02562 * 18 17 16 20 20 N 1.48007 * 120.02705 * 180.02562 * 19 18 17 21 21 O 1.21798 * 120.00276 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00116 * 179.97438 * 20 19 18 23 23 H 0.97003 * 119.99679 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47331 * 59.99915 * 9 7 2 25 25 H 1.09004 * 109.47141 * 300.00473 * 9 7 2 26 26 H 1.08999 * 109.47072 * 59.99808 * 11 10 9 27 27 H 1.08998 * 109.47052 * 300.00173 * 11 10 9 28 28 H 1.08999 * 109.47276 * 60.00069 * 12 11 10 29 29 H 1.08995 * 109.46990 * 300.00110 * 12 11 10 30 30 H 1.08000 * 120.03041 * 359.95195 * 15 14 13 31 31 H 1.07993 * 119.97844 * 179.72247 * 16 15 14 32 32 H 1.08004 * 119.94567 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.97538 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 16 4.1162 -2.9043 0.0010 11 6 5.9187 -2.6998 0.0009 12 6 6.5880 -4.0757 0.0014 13 8 8.0079 -3.9146 0.0008 14 6 8.7574 -5.0482 0.0017 15 6 8.1389 -6.2902 0.0026 16 6 8.9029 -7.4409 0.0030 17 6 10.2832 -7.3558 0.0019 18 6 10.9018 -6.1196 -0.0001 19 6 10.1421 -4.9656 -0.0005 20 7 10.8051 -3.6423 -0.0032 21 8 12.0209 -3.5703 -0.0046 22 8 10.1348 -2.6253 -0.0040 23 1 -0.4850 0.8401 0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 6.2218 -2.1484 0.8909 27 1 6.2218 -2.1482 -0.8890 28 1 6.2849 -4.6275 -0.8883 29 1 6.2849 -4.6268 0.8916 30 1 7.0610 -6.3572 0.0034 31 1 8.4220 -8.4079 0.0082 32 1 10.8789 -8.2567 0.0026 33 1 11.9800 -6.0557 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = -19.238489 kcal Electronic energy + Delta-G solvation = -18783.967576 eV Core-core repulsion = 15518.834142 eV Total energy + Delta-G solvation = -3265.133433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.25027 -40.57600 -38.22992 -36.46930 -33.11597 -32.69778 -31.89330 -30.32765 -29.44491 -26.59899 -24.72085 -22.81209 -22.70005 -21.84064 -19.75274 -18.68701 -18.28175 -17.60564 -16.99415 -16.52486 -16.40181 -15.88370 -15.45237 -14.95794 -14.32862 -14.16497 -14.06513 -13.12043 -13.02831 -12.86447 -12.45035 -12.38391 -12.29508 -11.83449 -11.55254 -11.18664 -11.09102 -11.07758 -10.84389 -10.55376 -10.20522 -10.07044 -9.74923 -9.16001 -9.06095 -8.77558 -7.00859 -6.24580 -4.27967 -0.32545 0.56873 1.16833 1.31092 1.86907 2.87331 2.93849 3.18715 3.26075 3.28170 3.47820 3.93013 4.06876 4.26124 4.37402 4.42100 4.57136 4.68214 4.72233 4.97987 5.06850 5.10716 5.25071 5.41398 5.60126 5.62412 5.77546 5.87439 6.27032 6.49681 6.59980 6.69690 7.33446 7.63717 8.22234 8.76514 9.30549 10.87224 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.003212 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.412960 B = 8716.361579 C = 9658.027437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.082 3.918 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.084 0.916 9 C 0.052 3.948 10 S -0.254 6.254 11 C -0.105 4.105 12 C 0.074 3.926 13 O -0.279 6.279 14 C 0.205 3.795 15 C -0.214 4.214 16 C -0.025 4.025 17 C -0.162 4.162 18 C -0.021 4.021 19 C -0.087 4.087 20 N 0.035 4.965 21 O -0.186 6.186 22 O -0.133 6.133 23 H 0.269 0.731 24 H 0.039 0.961 25 H 0.034 0.966 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.499 -15.737 0.028 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.123 4.123 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.102 0.898 9 C -0.095 4.095 10 S -0.028 6.028 11 C -0.253 4.253 12 C -0.002 4.002 13 O -0.189 6.189 14 C 0.155 3.845 15 C -0.233 4.233 16 C -0.043 4.043 17 C -0.181 4.181 18 C -0.040 4.040 19 C -0.172 4.172 20 N 0.553 4.447 21 O -0.394 6.394 22 O -0.355 6.355 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 19.530 -16.970 0.031 25.872 hybrid contribution 1.020 2.227 -0.016 2.449 sum 20.550 -14.743 0.015 25.291 Atomic orbital electron populations 1.69858 1.06172 1.27449 1.49187 1.24838 0.94766 0.98768 0.93971 0.86811 0.80359 0.83472 0.78960 1.19764 1.20688 1.18938 1.20432 0.86711 0.95381 1.53195 0.89777 1.21460 1.01077 0.87426 0.99551 1.86603 0.97941 1.20201 1.98075 1.23191 0.97642 0.98045 1.06445 1.22771 0.75776 0.98602 1.03020 1.86413 1.20115 1.27184 1.85205 1.18729 0.88570 0.87605 0.89629 1.21489 1.02163 0.90486 1.09173 1.21450 0.93771 0.98849 0.90276 1.21111 0.94876 0.97020 1.05106 1.20951 1.01502 0.89612 0.91960 1.20575 0.89866 0.84362 1.22352 1.43339 1.00866 1.02715 0.97771 1.94505 0.96024 1.93684 1.55155 1.94637 1.64603 1.24259 1.51953 0.92094 0.94324 0.94784 0.89258 0.89251 0.90298 0.90290 0.82753 0.83661 0.83534 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.45 9.68 -34.44 -0.33 -14.79 16 8 H 0.08 2.56 7.96 -52.49 -0.42 2.15 16 9 C 0.05 1.23 4.77 36.01 0.17 1.40 16 10 S -0.25 -4.98 21.66 -107.50 -2.33 -7.31 16 11 C -0.11 -1.61 6.31 37.16 0.23 -1.37 16 12 C 0.07 0.90 4.75 37.16 0.18 1.07 16 13 O -0.28 -3.70 8.15 -41.54 -0.34 -4.04 16 14 C 0.21 2.31 6.67 -39.22 -0.26 2.04 16 15 C -0.21 -1.70 9.04 -39.43 -0.36 -2.06 16 16 C -0.03 -0.14 10.04 -39.60 -0.40 -0.54 16 17 C -0.16 -0.88 10.04 -39.56 -0.40 -1.28 16 18 C -0.02 -0.17 9.55 -39.61 -0.38 -0.55 16 19 C -0.09 -1.00 6.87 -79.81 -0.55 -1.55 16 20 N 0.04 0.52 4.45 34.03 0.15 0.67 16 21 O -0.19 -2.68 18.45 -29.46 -0.54 -3.22 16 22 O -0.13 -2.19 17.24 -36.49 -0.63 -2.82 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.04 0.89 7.20 -51.93 -0.37 0.52 16 25 H 0.03 0.78 7.57 -51.92 -0.39 0.38 16 26 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.08 0.85 7.66 -51.93 -0.40 0.46 16 29 H 0.08 0.85 7.66 -51.93 -0.40 0.46 16 30 H 0.15 1.02 6.30 -52.49 -0.33 0.69 16 31 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 32 H 0.15 0.36 8.06 -52.48 -0.42 -0.06 16 33 H 0.16 1.00 7.61 -52.49 -0.40 0.60 16 LS Contribution 307.98 15.07 4.64 4.64 Total: -1.00 -32.06 307.98 -8.70 -40.76 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -3.57 Total: -3.61 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.19 Total: -15.42 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.93 Total: -25.04 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.51 Total: -10.08 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.33 Total: -7.31 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.06 -8.70 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.520 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds