Wall clock time and date at job start Tue Mar 31 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48492 * 109.47159 * 270.00033 * 3 2 1 5 5 H 1.48503 * 109.47058 * 29.99899 * 3 2 1 6 6 H 1.48503 * 109.47134 * 150.00040 * 3 2 1 7 7 C 1.37881 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00048 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00071 * 180.02562 * 7 2 1 10 10 S 1.81396 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.81406 * 102.99849 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46955 * 179.97438 * 11 10 9 13 13 O 1.42904 * 109.47009 * 179.97438 * 12 11 10 14 14 C 1.35898 * 116.99940 * 179.97438 * 13 12 11 15 15 C 1.38747 * 120.05546 * 0.02562 * 14 13 12 16 16 C 1.38125 * 119.94590 * 179.97438 * 15 14 13 17 17 C 1.38289 * 120.05159 * 359.97438 * 16 15 14 18 18 C 1.38243 * 120.11362 * 359.97438 * 17 16 15 19 19 C 1.38163 * 120.05442 * 0.02562 * 18 17 16 20 20 N 1.48007 * 120.02705 * 180.02562 * 19 18 17 21 21 O 1.21798 * 120.00276 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00116 * 179.97438 * 20 19 18 23 23 H 0.97003 * 119.99679 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47331 * 59.99915 * 9 7 2 25 25 H 1.09004 * 109.47141 * 300.00473 * 9 7 2 26 26 H 1.08999 * 109.47072 * 59.99808 * 11 10 9 27 27 H 1.08998 * 109.47052 * 300.00173 * 11 10 9 28 28 H 1.08999 * 109.47276 * 60.00069 * 12 11 10 29 29 H 1.08995 * 109.46990 * 300.00110 * 12 11 10 30 30 H 1.08000 * 120.03041 * 359.95195 * 15 14 13 31 31 H 1.07993 * 119.97844 * 179.72247 * 16 15 14 32 32 H 1.08004 * 119.94567 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.97538 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 16 4.1162 -2.9043 0.0010 11 6 5.9187 -2.6998 0.0009 12 6 6.5880 -4.0757 0.0014 13 8 8.0079 -3.9146 0.0008 14 6 8.7574 -5.0482 0.0017 15 6 8.1389 -6.2902 0.0026 16 6 8.9029 -7.4409 0.0030 17 6 10.2832 -7.3558 0.0019 18 6 10.9018 -6.1196 -0.0001 19 6 10.1421 -4.9656 -0.0005 20 7 10.8051 -3.6423 -0.0032 21 8 12.0209 -3.5703 -0.0046 22 8 10.1348 -2.6253 -0.0040 23 1 -0.4850 0.8401 0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8753 -0.6803 -0.8888 26 1 6.2218 -2.1484 0.8909 27 1 6.2218 -2.1482 -0.8890 28 1 6.2849 -4.6275 -0.8883 29 1 6.2849 -4.6268 0.8916 30 1 7.0610 -6.3572 0.0034 31 1 8.4220 -8.4079 0.0082 32 1 10.8789 -8.2567 0.0026 33 1 11.9800 -6.0557 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:11 Heat of formation + Delta-G solvation = -37.540888 kcal Electronic energy + Delta-G solvation = -18784.761227 eV Core-core repulsion = 15518.834142 eV Total energy + Delta-G solvation = -3265.927085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.21844 -41.37674 -38.95735 -37.53273 -35.23645 -33.52439 -32.71850 -31.49590 -31.06786 -27.47679 -25.77367 -24.52681 -23.45439 -22.88456 -20.60805 -19.70009 -19.11842 -19.04872 -18.60712 -17.47969 -17.31717 -17.01109 -16.35271 -16.07516 -15.62653 -15.28836 -15.18615 -14.78976 -14.48052 -14.17877 -13.50486 -13.48043 -13.11848 -12.70850 -12.67341 -12.63209 -12.28790 -12.24234 -12.13230 -12.05002 -12.02514 -11.78655 -10.92115 -10.83696 -10.68470 -9.73174 -8.60570 -8.40319 -6.50130 -1.18094 -0.02016 0.31291 0.41601 0.56066 1.33659 1.34507 1.44939 1.79305 2.00211 2.26926 2.29551 2.93061 3.26281 3.42158 3.70321 3.71528 3.79494 3.95905 4.02829 4.16820 4.44427 4.47113 4.58452 4.63705 4.70540 4.71599 4.96673 5.12099 5.21858 5.28915 5.39652 5.89243 6.03427 6.53014 6.53977 7.12803 8.75251 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.003212 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.412960 B = 8716.361579 C = 9658.027437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.042 0.958 9 C 0.047 3.953 10 S -0.261 6.261 11 C -0.093 4.093 12 C 0.081 3.919 13 O -0.304 6.304 14 C 0.179 3.821 15 C -0.217 4.217 16 C -0.007 4.007 17 C -0.142 4.142 18 C -0.026 4.026 19 C -0.111 4.111 20 N 0.038 4.962 21 O -0.181 6.181 22 O -0.199 6.199 23 H 0.273 0.727 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.168 0.832 31 H 0.188 0.812 32 H 0.189 0.811 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.718 -18.072 0.018 29.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.060 0.940 9 C -0.101 4.101 10 S -0.035 6.035 11 C -0.241 4.241 12 C 0.006 3.994 13 O -0.215 6.215 14 C 0.129 3.871 15 C -0.236 4.236 16 C -0.025 4.025 17 C -0.161 4.161 18 C -0.045 4.045 19 C -0.197 4.197 20 N 0.548 4.452 21 O -0.394 6.394 22 O -0.407 6.407 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.185 0.815 31 H 0.205 0.795 32 H 0.206 0.794 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 21.685 -19.248 0.021 28.996 hybrid contribution 0.436 2.615 -0.014 2.651 sum 22.121 -16.634 0.007 27.677 Atomic orbital electron populations 1.70001 1.08151 1.28804 1.50631 1.25820 0.95618 1.02982 0.93291 0.85687 0.79446 0.78153 0.79630 1.18666 1.20128 1.17187 1.20631 0.89165 0.94015 1.53055 0.94011 1.21267 0.98386 0.90516 0.99920 1.86441 1.01840 1.17109 1.98106 1.23136 0.94146 1.00394 1.06446 1.22618 0.75831 0.96522 1.04455 1.86349 1.20108 1.28942 1.86128 1.19063 0.88373 0.88151 0.91483 1.21778 1.03123 0.89890 1.08781 1.22013 0.93816 0.99614 0.87055 1.21653 0.95286 0.97123 1.02009 1.21331 1.02184 0.89339 0.91670 1.20946 0.90397 0.83249 1.25085 1.43809 1.00755 1.03801 0.96854 1.94446 0.96689 1.94139 1.54143 1.94627 1.64658 1.26031 1.55365 0.91740 0.93876 0.93996 0.89336 0.89264 0.88859 0.88862 0.81465 0.79519 0.79412 0.81215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 2 C 0.02 1.34 5.47 84.66 0.46 1.80 16 3 Si 0.95 42.75 27.47 68.60 1.88 44.63 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 7 C -0.53 -30.36 9.68 25.60 0.25 -30.11 16 8 H 0.04 2.67 7.96 -2.91 -0.02 2.65 16 9 C 0.05 2.21 4.77 71.24 0.34 2.55 16 10 S -0.26 -10.18 21.66 -56.49 -1.22 -11.40 16 11 C -0.09 -2.78 6.31 71.98 0.45 -2.33 16 12 C 0.08 1.88 4.75 71.98 0.34 2.22 16 13 O -0.30 -8.02 8.15 -71.25 -0.58 -8.60 16 14 C 0.18 3.81 6.67 22.50 0.15 3.96 16 15 C -0.22 -2.75 9.04 22.36 0.20 -2.55 16 16 C -0.01 -0.04 10.04 22.25 0.22 0.18 16 17 C -0.14 -0.82 10.04 22.28 0.22 -0.60 16 18 C -0.03 -0.35 9.55 22.25 0.21 -0.13 16 19 C -0.11 -2.48 6.87 36.47 0.25 -2.23 16 20 N 0.04 1.13 4.45 -46.24 -0.21 0.93 16 21 O -0.18 -5.26 18.45 18.89 0.35 -4.91 16 22 O -0.20 -7.00 17.24 25.61 0.44 -6.56 16 23 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 24 H 0.04 1.97 7.20 -2.39 -0.02 1.95 16 25 H 0.04 1.88 7.57 -2.39 -0.02 1.87 16 26 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.09 1.85 7.66 -2.39 -0.02 1.84 16 29 H 0.09 1.86 7.66 -2.39 -0.02 1.84 16 30 H 0.17 1.63 6.30 -2.91 -0.02 1.61 16 31 H 0.19 -0.37 8.06 -2.91 -0.02 -0.39 16 32 H 0.19 -0.38 8.06 -2.91 -0.02 -0.40 16 33 H 0.17 1.71 7.61 -2.91 -0.02 1.68 16 Total: -1.00 -74.50 307.98 5.15 -69.35 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 1.07 Total: 0.81 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 3.11 Total: -27.23 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.09 Total: -56.09 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.21 Total: -20.07 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.63 kcal Atomic # 16 Polarization: -10.18 SS G_CDS: -1.22 Total: -11.40 kcal Total: -74.50 5.15 -69.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.813 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds