Wall clock time and date at job start Tue Mar 31 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47319 * 180.02562 * 9 7 2 11 11 C 1.81397 * 102.99868 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.43354 * 305.69930 * 11 10 9 13 13 C 1.54634 * 110.48635 * 183.15706 * 11 10 9 14 14 C 1.54685 * 101.67023 * 216.60684 * 13 11 10 15 15 N 1.46766 * 105.53657 * 25.25664 * 14 13 11 16 16 C 1.46500 * 124.34987 * 163.09930 * 15 14 13 17 17 C 1.53002 * 109.46759 * 270.00350 * 16 15 14 18 18 F 1.39895 * 109.47374 * 60.00324 * 17 16 15 19 19 F 1.39903 * 109.46680 * 179.97438 * 17 16 15 20 20 F 1.39896 * 109.47409 * 299.99739 * 17 16 15 21 21 C 1.34420 * 111.30056 * 343.08079 * 15 14 13 22 22 O 1.21279 * 124.94188 * 180.44273 * 21 15 14 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09000 * 110.96915 * 334.64694 * 13 11 10 27 27 H 1.09001 * 110.96312 * 98.40415 * 13 11 10 28 28 H 1.09005 * 110.13706 * 266.27956 * 14 13 11 29 29 H 1.08993 * 110.37262 * 144.36176 * 14 13 11 30 30 H 1.08996 * 109.47403 * 30.00289 * 16 15 14 31 31 H 1.08998 * 109.47270 * 150.00420 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0021 11 6 1.3516 -5.3366 0.0011 12 1 0.6452 -5.2882 0.8298 13 6 2.1929 -6.6316 0.0820 14 6 1.3854 -7.5867 -0.8280 15 7 0.6552 -6.7187 -1.7593 16 6 0.0469 -7.1759 -3.0112 17 6 1.0642 -7.0527 -4.1473 18 9 2.1839 -7.8400 -3.8582 19 9 0.4835 -7.4899 -5.3427 20 9 1.4556 -5.7162 -4.2800 21 6 0.6159 -5.4504 -1.3159 22 8 0.0695 -4.5311 -1.8880 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 3.1956 -6.4707 -0.3142 27 1 2.2348 -7.0062 1.1048 28 1 0.6860 -8.1721 -0.2309 29 1 2.0573 -8.2472 -1.3760 30 1 -0.2581 -8.2172 -2.9079 31 1 -0.8255 -6.5625 -3.2365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015162.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:46 Heat of formation + Delta-G solvation = -192.367724 kcal Electronic energy + Delta-G solvation = -20607.739168 eV Core-core repulsion = 16793.241548 eV Total energy + Delta-G solvation = -3814.497621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.16561 -47.74148 -47.58499 -40.38137 -36.48611 -33.60176 -33.39276 -28.86099 -28.04214 -27.60302 -23.79350 -23.15172 -21.93387 -20.08329 -18.60416 -18.58457 -17.87036 -17.16054 -16.70473 -16.34862 -15.62155 -14.70878 -14.58028 -14.42347 -14.11758 -13.98426 -13.85922 -13.78750 -13.76049 -13.70401 -13.60969 -12.98764 -12.78875 -12.47647 -12.20805 -12.15314 -11.47320 -11.35392 -10.70208 -10.49216 -10.06685 -9.99450 -9.18012 -9.13015 -8.74195 -8.46759 -6.86832 -6.45126 -4.16195 1.96961 2.47765 2.56307 2.93776 3.44194 3.47254 3.60312 3.65502 3.67337 3.80696 4.12296 4.25196 4.38109 4.51631 4.72550 4.74847 4.91005 4.96440 5.22227 5.33666 5.33915 5.65935 5.86985 6.09310 6.74743 6.86798 7.11791 7.88629 8.10205 8.33491 8.73204 9.53496 10.95383 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.004801 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.012477 B = 5831.130806 C = 6364.722748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.026 3.974 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.593 4.593 8 H 0.059 0.941 9 C 0.066 3.934 10 S -0.234 6.234 11 C -0.109 4.109 12 H 0.117 0.883 13 C -0.105 4.105 14 C 0.105 3.895 15 N -0.625 5.625 16 C 0.091 3.909 17 C 0.430 3.570 18 F -0.185 7.185 19 F -0.184 7.184 20 F -0.169 7.169 21 C 0.527 3.473 22 O -0.486 6.486 23 H 0.270 0.730 24 H 0.023 0.977 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -20.613 -3.220 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.904 3.096 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.632 4.632 8 H 0.077 0.923 9 C -0.081 4.081 10 S -0.005 6.005 11 C -0.241 4.241 12 H 0.135 0.865 13 C -0.143 4.143 14 C -0.019 4.019 15 N -0.362 5.362 16 C -0.035 4.035 17 C 0.374 3.626 18 F -0.166 7.166 19 F -0.166 7.166 20 F -0.150 7.150 21 C 0.311 3.689 22 O -0.357 6.357 23 H 0.080 0.920 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.142 0.858 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.371 -18.406 -3.566 18.799 hybrid contribution -0.959 -1.858 -0.279 2.109 sum 0.412 -20.264 -3.845 20.630 Atomic orbital electron populations 1.70770 1.06822 1.30730 1.45620 1.25929 0.96394 1.02409 0.93309 0.83439 0.74798 0.74646 0.76752 1.20558 1.21184 1.21179 1.21516 0.94552 0.89884 1.57285 0.92315 1.21319 0.94618 0.92127 1.00009 1.86676 1.17483 0.99154 1.97181 1.23868 1.01585 1.00400 0.98247 0.86462 1.22502 0.99166 0.91461 1.01203 1.22268 0.95242 0.93140 0.91209 1.48124 1.57236 1.10479 1.20362 1.22424 0.94418 1.05168 0.81513 1.21381 0.82644 0.74494 0.84103 1.93161 1.55487 1.74695 1.93276 1.93183 1.84144 1.89654 1.49610 1.93298 1.91761 1.33831 1.96112 1.21143 0.79092 0.81559 0.87084 1.90815 1.43416 1.40200 1.61269 0.92000 0.95928 0.93061 0.88883 0.88191 0.90357 0.89635 0.85841 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.65 55.43 0.76 -27.49 16 2 C 0.03 0.76 5.46 -17.82 -0.10 0.66 16 3 Si 1.08 25.86 29.90 -169.99 -5.08 20.78 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.59 -17.63 9.13 -34.44 -0.31 -17.94 16 8 H 0.06 1.74 7.71 -52.48 -0.40 1.34 16 9 C 0.07 1.81 4.74 36.01 0.17 1.98 16 10 S -0.23 -5.15 20.94 -107.50 -2.25 -7.40 16 11 C -0.11 -1.77 3.44 -26.74 -0.09 -1.86 16 12 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 13 C -0.10 -1.14 6.74 -24.99 -0.17 -1.30 16 14 C 0.10 0.91 7.27 -3.01 -0.02 0.89 16 15 N -0.63 -7.70 2.81 -172.28 -0.48 -8.19 16 16 C 0.09 0.90 5.91 -4.04 -0.02 0.87 16 17 C 0.43 5.21 3.29 37.16 0.12 5.33 16 18 F -0.18 -2.18 16.54 2.25 0.04 -2.14 16 19 F -0.18 -2.11 17.32 2.25 0.04 -2.07 16 20 F -0.17 -2.80 16.96 2.25 0.04 -2.76 16 21 C 0.53 9.15 7.15 -10.86 -0.08 9.07 16 22 O -0.49 -10.77 15.52 5.56 0.09 -10.68 16 23 H 0.27 8.46 7.22 -40.82 -0.29 8.17 16 24 H 0.02 0.63 8.01 -51.92 -0.42 0.21 16 25 H 0.05 1.51 6.30 -51.92 -0.33 1.19 16 26 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.62 7.52 -51.93 -0.39 0.22 16 30 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.13 1.29 7.92 -51.93 -0.41 0.88 16 LS Contribution 293.20 15.07 4.42 4.42 Total: -1.00 -35.55 293.20 -6.08 -41.63 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -3.14 Total: -3.79 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.50 Total: -2.30 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.27 Total: -35.68 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 0.11 Total: -6.97 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.78 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -2.25 Total: -7.40 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -35.55 -6.08 -41.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015162.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.734 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds