Wall clock time and date at job start Tue Mar 31 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47319 * 180.02562 * 9 7 2 11 11 C 1.81397 * 102.99868 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.43354 * 305.69930 * 11 10 9 13 13 C 1.54634 * 110.48635 * 183.15706 * 11 10 9 14 14 C 1.54685 * 101.67023 * 216.60684 * 13 11 10 15 15 N 1.46766 * 105.53657 * 25.25664 * 14 13 11 16 16 C 1.46500 * 124.34987 * 163.09930 * 15 14 13 17 17 C 1.53002 * 109.46759 * 270.00350 * 16 15 14 18 18 F 1.39895 * 109.47374 * 60.00324 * 17 16 15 19 19 F 1.39903 * 109.46680 * 179.97438 * 17 16 15 20 20 F 1.39896 * 109.47409 * 299.99739 * 17 16 15 21 21 C 1.34420 * 111.30056 * 343.08079 * 15 14 13 22 22 O 1.21279 * 124.94188 * 180.44273 * 21 15 14 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09000 * 110.96915 * 334.64694 * 13 11 10 27 27 H 1.09001 * 110.96312 * 98.40415 * 13 11 10 28 28 H 1.09005 * 110.13706 * 266.27956 * 14 13 11 29 29 H 1.08993 * 110.37262 * 144.36176 * 14 13 11 30 30 H 1.08996 * 109.47403 * 30.00289 * 16 15 14 31 31 H 1.08998 * 109.47270 * 150.00420 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0021 11 6 1.3516 -5.3366 0.0011 12 1 0.6452 -5.2882 0.8298 13 6 2.1929 -6.6316 0.0820 14 6 1.3854 -7.5867 -0.8280 15 7 0.6552 -6.7187 -1.7593 16 6 0.0469 -7.1759 -3.0112 17 6 1.0642 -7.0527 -4.1473 18 9 2.1839 -7.8400 -3.8582 19 9 0.4835 -7.4899 -5.3427 20 9 1.4556 -5.7162 -4.2800 21 6 0.6159 -5.4504 -1.3159 22 8 0.0695 -4.5311 -1.8880 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 3.1956 -6.4707 -0.3142 27 1 2.2348 -7.0062 1.1048 28 1 0.6860 -8.1721 -0.2309 29 1 2.0573 -8.2472 -1.3760 30 1 -0.2581 -8.2172 -2.9079 31 1 -0.8255 -6.5625 -3.2365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015162.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:45 Heat of formation + Delta-G solvation = -216.606723 kcal Electronic energy + Delta-G solvation = -20608.790250 eV Core-core repulsion = 16793.241548 eV Total energy + Delta-G solvation = -3815.548702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.16309 -48.69418 -48.66699 -41.55017 -37.76262 -35.67497 -34.57704 -30.21703 -29.83135 -28.73898 -25.30758 -24.74397 -23.04779 -21.20804 -19.61411 -19.59293 -19.16492 -18.87817 -18.06283 -17.50537 -16.97256 -16.21211 -15.69870 -15.62044 -15.57673 -15.35929 -15.11417 -15.10589 -14.94241 -14.81122 -14.78340 -14.43346 -14.14603 -13.73410 -13.56386 -13.44988 -13.11430 -12.58606 -12.35231 -12.10876 -11.91189 -11.43687 -11.07527 -10.82475 -10.71780 -10.11889 -8.84276 -8.67328 -6.56729 0.53222 1.26454 1.49275 1.51315 1.58802 1.71913 1.79748 1.90962 2.50295 2.74372 2.89445 3.03185 3.10040 3.18878 3.41878 3.81774 3.92451 3.98964 4.17628 4.38252 4.59399 4.61536 4.81989 4.89986 5.01704 5.20394 5.61830 5.67295 5.95178 6.32129 6.84098 7.23565 8.55980 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.004801 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.012477 B = 5831.130806 C = 6364.722748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.027 4.027 3 Si 1.126 2.874 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.271 1.271 7 C -0.612 4.612 8 H 0.055 0.945 9 C 0.066 3.934 10 S -0.245 6.245 11 C -0.105 4.105 12 H 0.127 0.873 13 C -0.096 4.096 14 C 0.105 3.895 15 N -0.615 5.615 16 C 0.091 3.909 17 C 0.427 3.573 18 F -0.180 7.180 19 F -0.180 7.180 20 F -0.202 7.202 21 C 0.515 3.485 22 O -0.549 6.549 23 H 0.254 0.746 24 H 0.005 0.995 25 H 0.018 0.982 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.182 0.818 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -23.331 -2.652 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.226 4.226 3 Si 0.945 3.055 4 H -0.201 1.201 5 H -0.186 1.186 6 H -0.196 1.196 7 C -0.651 4.651 8 H 0.073 0.927 9 C -0.082 4.082 10 S -0.015 6.015 11 C -0.237 4.237 12 H 0.145 0.855 13 C -0.134 4.134 14 C -0.017 4.017 15 N -0.349 5.349 16 C -0.034 4.034 17 C 0.371 3.629 18 F -0.162 7.162 19 F -0.161 7.161 20 F -0.184 7.184 21 C 0.301 3.699 22 O -0.426 6.426 23 H 0.063 0.937 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.103 0.897 27 H 0.156 0.844 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.199 0.801 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.296 -21.206 -2.992 21.539 hybrid contribution -1.242 -1.244 -0.499 1.827 sum 1.055 -22.451 -3.491 22.745 Atomic orbital electron populations 1.70907 1.07869 1.29765 1.47587 1.27640 0.96453 1.06613 0.91882 0.82858 0.74104 0.70297 0.78286 1.20135 1.18623 1.19623 1.21901 0.94587 0.91512 1.57053 0.92678 1.20941 0.95197 0.94564 0.97470 1.86301 1.17819 1.00149 1.97268 1.24104 1.01787 0.99327 0.98512 0.85537 1.22669 0.98015 0.88513 1.04245 1.22679 0.96086 0.92190 0.90701 1.48169 1.56287 1.09231 1.21216 1.22771 0.93035 1.08183 0.79428 1.21728 0.83114 0.73067 0.84964 1.93164 1.55510 1.74268 1.93238 1.93189 1.83998 1.89392 1.49571 1.93240 1.92193 1.36620 1.96344 1.21331 0.78698 0.82631 0.87279 1.90789 1.46187 1.42624 1.62960 0.93710 0.97685 0.96362 0.89713 0.84355 0.85954 0.86998 0.80101 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.02 13.65 21.45 0.29 -59.73 16 2 C -0.03 -1.62 5.46 84.65 0.46 -1.15 16 3 Si 1.13 52.34 29.90 68.60 2.05 54.39 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.61 -37.72 9.13 25.60 0.23 -37.48 16 8 H 0.05 3.36 7.71 -2.91 -0.02 3.33 16 9 C 0.07 3.80 4.74 71.24 0.34 4.14 16 10 S -0.24 -10.98 20.94 -56.49 -1.18 -12.17 16 11 C -0.11 -3.30 3.44 30.59 0.11 -3.20 16 12 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 13 C -0.10 -1.72 6.74 31.72 0.21 -1.50 16 14 C 0.10 1.27 7.27 86.90 0.63 1.91 16 15 N -0.61 -13.45 2.81 -817.57 -2.29 -15.74 16 16 C 0.09 1.54 5.91 86.38 0.51 2.05 16 17 C 0.43 9.63 3.29 71.98 0.24 9.87 16 18 F -0.18 -3.75 16.54 44.97 0.74 -3.01 16 19 F -0.18 -3.81 17.32 44.97 0.78 -3.04 16 20 F -0.20 -6.82 16.96 44.97 0.76 -6.06 16 21 C 0.52 17.78 7.15 87.90 0.63 18.41 16 22 O -0.55 -25.58 15.52 -3.03 -0.05 -25.63 16 23 H 0.25 16.88 7.22 -92.71 -0.67 16.21 16 24 H 0.00 0.29 8.01 -2.39 -0.02 0.27 16 25 H 0.02 1.16 6.30 -2.39 -0.02 1.14 16 26 H 0.08 1.72 7.88 -2.39 -0.02 1.70 16 27 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.11 0.92 7.52 -2.39 -0.02 0.90 16 30 H 0.18 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.12 2.29 7.92 -2.39 -0.02 2.27 16 Total: -1.00 -84.53 293.20 5.73 -78.80 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: 1.26 Total: -0.85 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 3.36 Total: -6.98 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -2.00 Total: -75.47 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 9 Polarization: -14.39 SS G_CDS: 2.28 Total: -12.10 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.05 Total: 54.39 kcal Atomic # 16 Polarization: -10.98 SS G_CDS: -1.18 Total: -12.17 kcal Total: -84.53 5.73 -78.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015162.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.805 kcal (2) G-P(sol) polarization free energy of solvation -84.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds