Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00059 * 2 1 4 4 H 1.48505 * 109.47190 * 239.99904 * 3 2 1 5 5 H 1.48499 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47461 * 119.99738 * 3 2 1 7 7 C 1.37882 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00001 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.81395 * 103.00024 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.43756 * 56.08668 * 11 10 9 13 13 C 1.54766 * 110.52110 * 178.70352 * 11 10 9 14 14 C 1.54480 * 101.70514 * 143.41135 * 13 11 10 15 15 N 1.46760 * 105.54782 * 334.68439 * 14 13 11 16 16 C 1.46510 * 124.34691 * 196.94799 * 15 14 13 17 17 C 1.53004 * 109.46799 * 90.00279 * 16 15 14 18 18 F 1.39900 * 109.47317 * 59.99788 * 17 16 15 19 19 F 1.39897 * 109.46749 * 180.02562 * 17 16 15 20 20 F 1.39903 * 109.46995 * 300.00026 * 17 16 15 21 21 C 1.34414 * 111.30623 * 16.97260 * 15 14 13 22 22 O 1.21280 * 124.94773 * 179.57465 * 21 15 14 23 23 H 0.96997 * 120.00384 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47210 * 59.99629 * 9 7 2 25 25 H 1.08998 * 109.46879 * 299.99605 * 9 7 2 26 26 H 1.09008 * 110.94796 * 25.33425 * 13 11 10 27 27 H 1.09002 * 111.04346 * 261.53403 * 13 11 10 28 28 H 1.09002 * 110.24746 * 215.63870 * 14 13 11 29 29 H 1.09002 * 110.24236 * 93.72593 * 14 13 11 30 30 H 1.08998 * 109.47125 * 210.00001 * 16 15 14 31 31 H 1.08998 * 109.46906 * 330.00100 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0021 11 6 1.3515 -5.3367 0.0027 12 1 0.6674 -5.3046 -0.8453 13 6 2.1943 -6.6343 -0.0288 14 6 1.3625 -7.5703 0.8759 15 7 0.6082 -6.6845 1.7704 16 6 -0.0334 -7.1174 3.0144 17 6 0.9534 -6.9719 4.1746 18 9 1.3415 -5.6329 4.2915 19 9 0.3409 -7.3859 5.3623 20 9 2.0802 -7.7644 3.9306 21 6 0.5810 -5.4250 1.3016 22 8 0.0201 -4.4948 1.8411 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 3.1858 -6.4654 0.3915 27 1 2.2640 -7.0313 -1.0416 28 1 2.0207 -8.2188 1.4543 29 1 0.6792 -8.1683 0.2730 30 1 -0.9113 -6.5000 3.2044 31 1 -0.3358 -8.1607 2.9232 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -188.151611 kcal Electronic energy + Delta-G solvation = -20583.435160 eV Core-core repulsion = 16769.120364 eV Total energy + Delta-G solvation = -3814.314796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.11157 -47.69069 -47.52774 -40.29345 -36.39327 -33.52120 -33.04138 -28.78490 -28.43327 -27.60943 -23.72891 -23.18061 -21.82137 -19.99917 -18.54539 -18.52707 -17.80003 -16.92802 -16.41436 -16.19505 -15.56432 -14.80022 -14.55113 -14.51898 -14.22325 -14.05955 -13.78697 -13.72874 -13.69942 -13.64405 -13.25545 -12.83235 -12.57944 -12.28217 -12.19278 -11.91791 -11.67994 -11.26575 -10.78816 -10.62317 -9.97382 -9.88246 -9.47609 -9.04706 -8.85808 -8.52211 -6.74627 -6.09120 -4.13608 2.07140 2.56228 2.64053 3.02993 3.33537 3.36396 3.40398 3.71327 3.76642 3.88432 4.18121 4.34264 4.43064 4.46204 4.79168 4.82832 4.98575 5.03763 5.27444 5.28984 5.43483 5.73295 5.95315 6.17497 6.84085 7.20507 7.44839 7.82543 8.09555 8.22697 8.87323 9.47934 11.01960 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.004829 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.100033 B = 5796.641772 C = 6348.920153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.084 3.916 10 S -0.257 6.257 11 C -0.104 4.104 12 H 0.118 0.882 13 C -0.105 4.105 14 C 0.105 3.895 15 N -0.626 5.626 16 C 0.091 3.909 17 C 0.430 3.570 18 F -0.168 7.168 19 F -0.185 7.185 20 F -0.185 7.185 21 C 0.525 3.475 22 O -0.482 6.482 23 H 0.265 0.735 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -20.085 3.351 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.082 0.918 9 C -0.063 4.063 10 S -0.028 6.028 11 C -0.235 4.235 12 H 0.136 0.864 13 C -0.144 4.144 14 C -0.018 4.018 15 N -0.363 5.363 16 C -0.035 4.035 17 C 0.373 3.627 18 F -0.150 7.150 19 F -0.167 7.167 20 F -0.167 7.167 21 C 0.310 3.690 22 O -0.352 6.352 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.144 0.856 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.778 -19.389 3.681 19.751 hybrid contribution -0.767 0.801 0.279 1.144 sum 0.011 -18.588 3.960 19.005 Atomic orbital electron populations 1.69963 1.06093 1.27261 1.49426 1.24941 0.94944 0.99111 0.94762 0.86437 0.79406 0.82051 0.78864 1.19971 1.21067 1.19949 1.20613 0.93243 0.88907 1.52626 0.91769 1.21281 0.93632 0.89928 1.01411 1.86663 1.18588 1.00247 1.97273 1.23824 1.01125 1.00103 0.98473 0.86437 1.22497 0.98999 0.91731 1.01164 1.22220 0.94711 0.92886 0.92022 1.48144 1.55757 1.10849 1.21569 1.22414 0.94430 1.05297 0.81356 1.21402 0.82126 0.74569 0.84555 1.93299 1.91796 1.33618 1.96249 1.93178 1.82810 1.90337 1.50336 1.93161 1.54891 1.74409 1.94200 1.21166 0.79558 0.81578 0.86709 1.90832 1.43267 1.38895 1.62233 0.92532 0.94933 0.92022 0.88908 0.88298 0.89767 0.90431 0.85566 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.91 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -15.12 9.13 -34.44 -0.31 -15.44 16 8 H 0.06 1.86 7.71 -52.49 -0.40 1.46 16 9 C 0.08 2.31 5.39 36.00 0.19 2.50 16 10 S -0.26 -5.63 20.97 -107.50 -2.25 -7.88 16 11 C -0.10 -1.69 3.45 -26.67 -0.09 -1.78 16 12 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 13 C -0.11 -1.15 6.73 -25.02 -0.17 -1.32 16 14 C 0.10 0.93 7.26 -3.12 -0.02 0.91 16 15 N -0.63 -7.83 2.81 -172.41 -0.48 -8.32 16 16 C 0.09 0.92 5.91 -4.03 -0.02 0.90 16 17 C 0.43 5.27 3.29 37.16 0.12 5.40 16 18 F -0.17 -2.82 16.96 2.25 0.04 -2.78 16 19 F -0.18 -2.14 17.32 2.25 0.04 -2.10 16 20 F -0.19 -2.21 16.53 2.25 0.04 -2.17 16 21 C 0.53 9.23 7.15 -10.86 -0.08 9.15 16 22 O -0.48 -10.82 15.36 5.56 0.09 -10.73 16 23 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 24 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.85 6.30 -51.92 -0.33 1.53 16 26 H 0.09 1.10 7.88 -51.92 -0.41 0.69 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.62 7.52 -51.93 -0.39 0.23 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.13 1.32 7.92 -51.93 -0.41 0.90 16 31 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 294.22 15.07 4.43 4.43 Total: -1.00 -34.68 294.22 -6.06 -40.74 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -3.19 Total: -4.11 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.48 Total: 2.15 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.25 Total: -34.64 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.11 Total: -7.06 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -2.25 Total: -7.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.68 -6.06 -40.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.408 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds