Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00059 * 2 1 4 4 H 1.48505 * 109.47190 * 239.99904 * 3 2 1 5 5 H 1.48499 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47461 * 119.99738 * 3 2 1 7 7 C 1.37882 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00001 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.81395 * 103.00024 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.43756 * 56.08668 * 11 10 9 13 13 C 1.54766 * 110.52110 * 178.70352 * 11 10 9 14 14 C 1.54480 * 101.70514 * 143.41135 * 13 11 10 15 15 N 1.46760 * 105.54782 * 334.68439 * 14 13 11 16 16 C 1.46510 * 124.34691 * 196.94799 * 15 14 13 17 17 C 1.53004 * 109.46799 * 90.00279 * 16 15 14 18 18 F 1.39900 * 109.47317 * 59.99788 * 17 16 15 19 19 F 1.39897 * 109.46749 * 180.02562 * 17 16 15 20 20 F 1.39903 * 109.46995 * 300.00026 * 17 16 15 21 21 C 1.34414 * 111.30623 * 16.97260 * 15 14 13 22 22 O 1.21280 * 124.94773 * 179.57465 * 21 15 14 23 23 H 0.96997 * 120.00384 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47210 * 59.99629 * 9 7 2 25 25 H 1.08998 * 109.46879 * 299.99605 * 9 7 2 26 26 H 1.09008 * 110.94796 * 25.33425 * 13 11 10 27 27 H 1.09002 * 111.04346 * 261.53403 * 13 11 10 28 28 H 1.09002 * 110.24746 * 215.63870 * 14 13 11 29 29 H 1.09002 * 110.24236 * 93.72593 * 14 13 11 30 30 H 1.08998 * 109.47125 * 210.00001 * 16 15 14 31 31 H 1.08998 * 109.46906 * 330.00100 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0021 11 6 1.3515 -5.3367 0.0027 12 1 0.6674 -5.3046 -0.8453 13 6 2.1943 -6.6343 -0.0288 14 6 1.3625 -7.5703 0.8759 15 7 0.6082 -6.6845 1.7704 16 6 -0.0334 -7.1174 3.0144 17 6 0.9534 -6.9719 4.1746 18 9 1.3415 -5.6329 4.2915 19 9 0.3409 -7.3859 5.3623 20 9 2.0802 -7.7644 3.9306 21 6 0.5810 -5.4250 1.3016 22 8 0.0201 -4.4948 1.8411 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 3.1858 -6.4654 0.3915 27 1 2.2640 -7.0313 -1.0416 28 1 2.0207 -8.2188 1.4543 29 1 0.6792 -8.1683 0.2730 30 1 -0.9113 -6.5000 3.2044 31 1 -0.3358 -8.1607 2.9232 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -211.652064 kcal Electronic energy + Delta-G solvation = -20584.454217 eV Core-core repulsion = 16769.120364 eV Total energy + Delta-G solvation = -3815.333852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.12227 -48.65442 -48.62558 -41.47497 -37.68608 -35.28010 -34.50749 -30.66296 -29.77532 -28.69120 -25.28162 -24.69449 -22.94566 -21.13568 -19.56295 -19.54815 -18.82242 -18.68464 -17.98651 -17.46788 -16.99200 -16.60594 -15.74165 -15.53833 -15.45418 -15.07037 -15.04494 -14.88980 -14.77122 -14.76481 -14.65962 -14.50011 -13.97503 -13.74013 -13.52258 -13.39455 -13.00141 -12.72687 -12.45988 -12.26854 -11.88364 -11.45860 -11.33630 -10.75937 -10.71489 -10.05343 -8.55020 -8.32306 -6.46893 0.64519 1.34316 1.38270 1.41676 1.50490 1.58469 1.82242 2.01155 2.35859 2.78802 2.94540 3.01384 3.16996 3.23937 3.49121 3.89131 3.99446 4.05686 4.22336 4.44924 4.64571 4.93809 4.95312 5.07988 5.13036 5.29052 5.55261 5.74496 5.89452 6.60763 6.93358 7.20363 8.79868 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.004829 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.100033 B = 5796.641772 C = 6348.920153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.087 3.913 10 S -0.263 6.263 11 C -0.101 4.101 12 H 0.126 0.874 13 C -0.096 4.096 14 C 0.105 3.895 15 N -0.616 5.616 16 C 0.091 3.909 17 C 0.427 3.573 18 F -0.202 7.202 19 F -0.181 7.181 20 F -0.181 7.181 21 C 0.514 3.486 22 O -0.546 6.546 23 H 0.269 0.731 24 H 0.008 0.992 25 H 0.024 0.976 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 -22.596 2.839 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.061 4.061 10 S -0.034 6.034 11 C -0.233 4.233 12 H 0.144 0.856 13 C -0.134 4.134 14 C -0.016 4.016 15 N -0.351 5.351 16 C -0.034 4.034 17 C 0.371 3.629 18 F -0.184 7.184 19 F -0.162 7.162 20 F -0.162 7.162 21 C 0.300 3.700 22 O -0.422 6.422 23 H 0.078 0.922 24 H 0.026 0.974 25 H 0.042 0.958 26 H 0.103 0.897 27 H 0.156 0.844 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.654 -21.968 3.165 22.256 hybrid contribution -1.048 1.372 0.479 1.792 sum 0.606 -20.596 3.644 20.925 Atomic orbital electron populations 1.70098 1.07906 1.28522 1.49974 1.26000 0.95898 1.03301 0.93768 0.85294 0.78181 0.76929 0.79404 1.18464 1.19978 1.19381 1.21004 0.93346 0.90455 1.53151 0.91948 1.20835 0.94218 0.92685 0.98326 1.86271 1.18705 1.01062 1.97348 1.24068 1.01370 0.99220 0.98682 0.85579 1.22653 0.97881 0.88763 1.04151 1.22629 0.95377 0.91949 0.91692 1.48182 1.54941 1.09641 1.22294 1.22757 0.93065 1.08330 0.79243 1.21742 0.82566 0.73140 0.85441 1.93242 1.92221 1.36413 1.96474 1.93185 1.82654 1.90081 1.50290 1.93164 1.54897 1.73972 1.94177 1.21361 0.79126 0.82581 0.86961 1.90806 1.46044 1.41382 1.63969 0.92172 0.97381 0.95772 0.89729 0.84448 0.87139 0.86051 0.86297 0.80200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 2 C 0.01 0.65 5.46 84.66 0.46 1.11 16 3 Si 0.98 46.07 29.54 68.60 2.03 48.09 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -33.10 9.13 25.60 0.23 -32.87 16 8 H 0.06 3.74 7.71 -2.91 -0.02 3.71 16 9 C 0.09 5.05 5.39 71.24 0.38 5.43 16 10 S -0.26 -11.83 20.97 -56.49 -1.18 -13.01 16 11 C -0.10 -3.23 3.45 30.64 0.11 -3.12 16 12 H 0.13 3.79 8.14 -2.39 -0.02 3.77 16 13 C -0.10 -1.75 6.73 31.70 0.21 -1.54 16 14 C 0.10 1.33 7.26 86.83 0.63 1.96 16 15 N -0.62 -13.81 2.81 -817.97 -2.29 -16.10 16 16 C 0.09 1.59 5.91 86.38 0.51 2.10 16 17 C 0.43 9.81 3.29 71.98 0.24 10.04 16 18 F -0.20 -6.89 16.96 44.97 0.76 -6.12 16 19 F -0.18 -3.89 17.32 44.97 0.78 -3.12 16 20 F -0.18 -3.83 16.53 44.97 0.74 -3.09 16 21 C 0.51 18.06 7.15 87.90 0.63 18.69 16 22 O -0.55 -25.88 15.36 -3.03 -0.05 -25.93 16 23 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.02 1.56 6.30 -2.39 -0.02 1.55 16 26 H 0.08 1.74 7.88 -2.38 -0.02 1.72 16 27 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.11 0.96 7.52 -2.39 -0.02 0.94 16 29 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.12 2.35 7.92 -2.39 -0.02 2.33 16 31 H 0.18 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -82.72 294.22 5.64 -77.08 By element: Atomic # 1 Polarization: -2.57 SS G_CDS: 1.16 Total: -1.41 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 3.41 Total: 1.80 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -2.01 Total: -74.30 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.93 kcal Atomic # 9 Polarization: -14.61 SS G_CDS: 2.28 Total: -12.32 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: -11.83 SS G_CDS: -1.18 Total: -13.01 kcal Total: -82.72 5.64 -77.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.570 kcal (2) G-P(sol) polarization free energy of solvation -82.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds