Wall clock time and date at job start Tue Mar 31 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00218 * 2 1 4 4 H 1.48502 * 109.47063 * 270.00665 * 3 2 1 5 5 H 1.48506 * 109.46863 * 30.00172 * 3 2 1 6 6 H 1.48495 * 109.47407 * 150.00398 * 3 2 1 7 7 C 1.37880 * 119.99417 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00512 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99360 * 179.97438 * 7 2 1 10 10 S 1.81397 * 109.46830 * 179.97438 * 9 7 2 11 11 C 1.81399 * 103.00047 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47264 * 180.02562 * 11 10 9 13 13 O 1.42909 * 109.47200 * 180.02562 * 12 11 10 14 14 C 1.35897 * 117.00046 * 180.02562 * 13 12 11 15 15 C 1.38727 * 120.05648 * 179.97438 * 14 13 12 16 16 C 1.38146 * 119.94819 * 180.02562 * 15 14 13 17 17 C 1.38264 * 120.05197 * 0.03048 * 16 15 14 18 18 N 1.48007 * 119.94459 * 179.97438 * 17 16 15 19 19 O 1.21803 * 119.99745 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00052 * 179.72330 * 18 17 16 21 21 C 1.38267 * 120.11170 * 0.24436 * 17 16 15 22 22 C 1.38145 * 120.05652 * 359.45728 * 21 17 16 23 23 H 0.97000 * 120.00539 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47002 * 60.00409 * 9 7 2 25 25 H 1.08994 * 109.47330 * 300.00369 * 9 7 2 26 26 H 1.08997 * 109.46878 * 60.00366 * 11 10 9 27 27 H 1.09000 * 109.47329 * 300.00221 * 11 10 9 28 28 H 1.08997 * 109.47055 * 60.00253 * 12 11 10 29 29 H 1.08997 * 109.47214 * 299.99787 * 12 11 10 30 30 H 1.08002 * 120.02536 * 0.02562 * 15 14 13 31 31 H 1.07994 * 119.97339 * 179.97438 * 16 15 14 32 32 H 1.08001 * 119.97348 * 179.73305 * 21 17 16 33 33 H 1.08000 * 120.03074 * 180.25062 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1161 -2.9044 -0.0010 11 6 5.9185 -2.7000 -0.0009 12 6 6.5878 -4.0759 -0.0014 13 8 8.0078 -3.9148 -0.0008 14 6 8.7572 -5.0485 -0.0017 15 6 10.1421 -4.9659 -0.0017 16 6 10.9017 -6.1197 -0.0031 17 6 10.2829 -7.3561 -0.0052 18 7 11.0992 -8.5908 -0.0073 19 8 12.3150 -8.5170 -0.0077 20 8 10.5551 -9.6805 -0.0041 21 6 8.9029 -7.4411 -0.0110 22 6 8.1387 -6.2903 -0.0033 23 1 -0.4851 0.8400 0.0004 24 1 3.8751 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8910 26 1 6.2216 -2.1485 0.8891 27 1 6.2217 -2.1486 -0.8909 28 1 6.2847 -4.6270 -0.8916 29 1 6.2847 -4.6277 0.8883 30 1 10.6258 -4.0003 -0.0005 31 1 11.9798 -6.0559 -0.0035 32 1 8.4219 -8.4081 -0.0170 33 1 7.0608 -6.3572 -0.0037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:15 Heat of formation + Delta-G solvation = -23.027600 kcal Electronic energy + Delta-G solvation = -18168.674297 eV Core-core repulsion = 14903.376556 eV Total energy + Delta-G solvation = -3265.297741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.40144 -40.79053 -38.19980 -36.78116 -33.18676 -32.64637 -31.84654 -30.85955 -29.52642 -26.46046 -24.77205 -23.20981 -22.62072 -21.93563 -19.68377 -18.88455 -18.85068 -17.74911 -17.06752 -16.69438 -16.51192 -15.69761 -15.33485 -14.66780 -14.36594 -14.26624 -14.20147 -13.75155 -13.18873 -13.13229 -12.57307 -12.45848 -12.38642 -11.81984 -11.57812 -11.44126 -11.37047 -11.30977 -10.92547 -10.64508 -10.28625 -9.96050 -9.82477 -9.24602 -9.21140 -8.84479 -7.10466 -6.30890 -4.34704 -0.41747 0.44832 1.06088 1.16667 1.78649 2.82711 2.91120 3.11071 3.18497 3.19067 3.38328 3.89392 4.00698 4.18710 4.19855 4.41414 4.59983 4.61456 4.73798 4.95549 4.99923 5.08577 5.18105 5.30831 5.44251 5.45612 5.63171 5.72959 6.12503 6.39251 6.50396 6.65140 7.25874 7.40972 8.15585 8.70401 9.23638 10.80919 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.056505 B = 0.002399 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.412783 B =11666.558960 C =12136.220616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.085 0.915 9 C 0.052 3.948 10 S -0.250 6.250 11 C -0.108 4.108 12 C 0.074 3.926 13 O -0.299 6.299 14 C 0.194 3.806 15 C -0.154 4.154 16 C -0.015 4.015 17 C -0.093 4.093 18 N 0.037 4.963 19 O -0.169 6.169 20 O -0.169 6.169 21 C -0.009 4.009 22 C -0.210 4.210 23 H 0.269 0.731 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.310 -9.879 -0.004 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.103 0.897 9 C -0.095 4.095 10 S -0.024 6.024 11 C -0.256 4.256 12 C -0.001 4.001 13 O -0.211 6.211 14 C 0.145 3.855 15 C -0.174 4.174 16 C -0.034 4.034 17 C -0.176 4.176 18 N 0.554 4.446 19 O -0.384 6.384 20 O -0.383 6.383 21 C -0.028 4.028 22 C -0.230 4.230 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.173 0.827 31 H 0.177 0.823 32 H 0.174 0.826 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 19.215 -9.888 -0.006 21.610 hybrid contribution 1.026 1.630 -0.017 1.926 sum 20.242 -8.259 -0.023 21.862 Atomic orbital electron populations 1.69851 1.06151 1.27495 1.48948 1.24846 0.94780 0.98755 0.93996 0.86803 0.80267 0.83542 0.78890 1.19791 1.20642 1.19090 1.20424 0.86658 0.95423 1.53349 0.89727 1.21463 1.01200 0.87420 0.99445 1.86716 0.97587 1.20089 1.98037 1.23209 0.98220 0.98148 1.06029 1.22746 0.75710 0.98384 1.03295 1.86150 1.20305 1.28693 1.85972 1.19421 0.91507 0.85909 0.88648 1.20467 0.90358 0.99495 1.07060 1.20821 1.01998 0.88821 0.91726 1.20972 0.91586 0.84685 1.20394 1.43523 1.01327 1.02601 0.97153 1.94529 0.95920 1.93965 1.53952 1.94540 1.74977 1.14872 1.53904 1.20846 0.90414 1.00767 0.90762 1.21412 1.01929 0.90629 1.08995 0.92036 0.94404 0.94849 0.89471 0.89478 0.90183 0.90191 0.82660 0.82346 0.82582 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.96 55.43 0.77 -25.12 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 20.02 27.47 -169.99 -4.67 15.36 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 7 C -0.52 -14.10 9.68 -34.44 -0.33 -14.44 16 8 H 0.08 2.53 7.96 -52.49 -0.42 2.11 16 9 C 0.05 1.17 4.77 36.01 0.17 1.35 16 10 S -0.25 -4.65 21.66 -107.50 -2.33 -6.98 16 11 C -0.11 -1.45 6.31 37.16 0.23 -1.22 16 12 C 0.07 0.77 4.75 37.16 0.18 0.95 16 13 O -0.30 -3.02 10.14 -19.42 -0.20 -3.22 16 14 C 0.19 1.69 6.69 -39.22 -0.26 1.42 16 15 C -0.15 -1.14 9.99 -39.43 -0.39 -1.53 16 16 C -0.01 -0.11 9.55 -39.61 -0.38 -0.49 16 17 C -0.09 -0.87 6.85 -79.93 -0.55 -1.42 16 18 N 0.04 0.43 4.45 33.97 0.15 0.58 16 19 O -0.17 -2.07 18.44 -29.46 -0.54 -2.61 16 20 O -0.17 -2.10 18.44 -29.46 -0.54 -2.64 16 21 C -0.01 -0.07 9.55 -39.60 -0.38 -0.45 16 22 C -0.21 -1.65 9.04 -39.43 -0.36 -2.01 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.04 0.83 7.20 -51.92 -0.37 0.46 16 25 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.09 1.14 8.14 -51.92 -0.42 0.71 16 28 H 0.08 0.77 7.66 -51.93 -0.40 0.37 16 29 H 0.08 0.77 7.66 -51.93 -0.40 0.37 16 30 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.16 0.94 7.60 -52.49 -0.40 0.54 16 32 H 0.16 1.07 7.61 -52.49 -0.40 0.67 16 33 H 0.16 1.01 6.30 -52.49 -0.33 0.68 16 LS Contribution 310.16 15.07 4.67 4.67 Total: -1.00 -29.97 310.16 -8.39 -38.36 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -3.54 Total: -2.70 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.16 Total: -15.70 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.92 Total: -24.54 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -1.28 Total: -8.48 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.36 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -2.33 Total: -6.98 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.97 -8.39 -38.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.333 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds