Wall clock time and date at job start Tue Mar 31 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00218 * 2 1 4 4 H 1.48502 * 109.47063 * 270.00665 * 3 2 1 5 5 H 1.48506 * 109.46863 * 30.00172 * 3 2 1 6 6 H 1.48495 * 109.47407 * 150.00398 * 3 2 1 7 7 C 1.37880 * 119.99417 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00512 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99360 * 179.97438 * 7 2 1 10 10 S 1.81397 * 109.46830 * 179.97438 * 9 7 2 11 11 C 1.81399 * 103.00047 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47264 * 180.02562 * 11 10 9 13 13 O 1.42909 * 109.47200 * 180.02562 * 12 11 10 14 14 C 1.35897 * 117.00046 * 180.02562 * 13 12 11 15 15 C 1.38727 * 120.05648 * 179.97438 * 14 13 12 16 16 C 1.38146 * 119.94819 * 180.02562 * 15 14 13 17 17 C 1.38264 * 120.05197 * 0.03048 * 16 15 14 18 18 N 1.48007 * 119.94459 * 179.97438 * 17 16 15 19 19 O 1.21803 * 119.99745 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00052 * 179.72330 * 18 17 16 21 21 C 1.38267 * 120.11170 * 0.24436 * 17 16 15 22 22 C 1.38145 * 120.05652 * 359.45728 * 21 17 16 23 23 H 0.97000 * 120.00539 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47002 * 60.00409 * 9 7 2 25 25 H 1.08994 * 109.47330 * 300.00369 * 9 7 2 26 26 H 1.08997 * 109.46878 * 60.00366 * 11 10 9 27 27 H 1.09000 * 109.47329 * 300.00221 * 11 10 9 28 28 H 1.08997 * 109.47055 * 60.00253 * 12 11 10 29 29 H 1.08997 * 109.47214 * 299.99787 * 12 11 10 30 30 H 1.08002 * 120.02536 * 0.02562 * 15 14 13 31 31 H 1.07994 * 119.97339 * 179.97438 * 16 15 14 32 32 H 1.08001 * 119.97348 * 179.73305 * 21 17 16 33 33 H 1.08000 * 120.03074 * 180.25062 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1161 -2.9044 -0.0010 11 6 5.9185 -2.7000 -0.0009 12 6 6.5878 -4.0759 -0.0014 13 8 8.0078 -3.9148 -0.0008 14 6 8.7572 -5.0485 -0.0017 15 6 10.1421 -4.9659 -0.0017 16 6 10.9017 -6.1197 -0.0031 17 6 10.2829 -7.3561 -0.0052 18 7 11.0992 -8.5908 -0.0073 19 8 12.3150 -8.5170 -0.0077 20 8 10.5551 -9.6805 -0.0041 21 6 8.9029 -7.4411 -0.0110 22 6 8.1387 -6.2903 -0.0033 23 1 -0.4851 0.8400 0.0004 24 1 3.8751 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8910 26 1 6.2216 -2.1485 0.8891 27 1 6.2217 -2.1486 -0.8909 28 1 6.2847 -4.6270 -0.8916 29 1 6.2847 -4.6277 0.8883 30 1 10.6258 -4.0003 -0.0005 31 1 11.9798 -6.0559 -0.0035 32 1 8.4219 -8.4081 -0.0170 33 1 7.0608 -6.3572 -0.0037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:15 Heat of formation + Delta-G solvation = -39.368382 kcal Electronic energy + Delta-G solvation = -18169.382887 eV Core-core repulsion = 14903.376556 eV Total energy + Delta-G solvation = -3266.006331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.22871 -41.49007 -38.90671 -37.66038 -35.22655 -33.47024 -32.47936 -31.67299 -31.46431 -27.26551 -25.69776 -24.59242 -23.65287 -22.85549 -20.40761 -19.73538 -19.59772 -19.09418 -18.58724 -17.49081 -17.33802 -17.06252 -16.17816 -15.99455 -15.42907 -15.25899 -14.94602 -14.83084 -14.46850 -14.45084 -14.15115 -13.59599 -13.29860 -12.72415 -12.69688 -12.37518 -12.30225 -12.29826 -12.17723 -12.11277 -12.08831 -11.77974 -10.91224 -10.80034 -10.54519 -9.89480 -8.59230 -8.39139 -6.49529 -1.21468 -0.13047 0.28291 0.39682 0.56882 1.34099 1.35506 1.45765 1.82775 2.06424 2.19888 2.27792 2.94203 3.27702 3.42746 3.55181 3.63948 3.74900 3.87306 4.17420 4.20280 4.40270 4.51398 4.58821 4.62071 4.65411 4.70093 4.72609 4.88816 5.05519 5.30356 5.31559 5.93832 6.04052 6.49420 6.55301 7.13321 8.76530 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.056505 B = 0.002399 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.412783 B =11666.558960 C =12136.220616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.019 3.981 3 Si 0.953 3.047 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.243 1.243 7 C -0.532 4.532 8 H 0.038 0.962 9 C 0.050 3.950 10 S -0.275 6.275 11 C -0.092 4.092 12 C 0.079 3.921 13 O -0.303 6.303 14 C 0.185 3.815 15 C -0.147 4.147 16 C -0.010 4.010 17 C -0.106 4.106 18 N 0.039 4.961 19 O -0.181 6.181 20 O -0.195 6.195 21 C -0.010 4.010 22 C -0.208 4.208 23 H 0.273 0.727 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.165 0.835 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.700 -8.656 -0.009 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.166 1.166 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.098 4.098 10 S -0.049 6.049 11 C -0.240 4.240 12 C 0.003 3.997 13 O -0.215 6.215 14 C 0.137 3.863 15 C -0.166 4.166 16 C -0.029 4.029 17 C -0.190 4.190 18 N 0.551 4.449 19 O -0.395 6.395 20 O -0.405 6.405 21 C -0.029 4.029 22 C -0.227 4.227 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.195 0.805 31 H 0.193 0.807 32 H 0.183 0.817 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 21.614 -8.717 -0.011 23.306 hybrid contribution 0.307 1.173 -0.017 1.213 sum 21.922 -7.544 -0.028 23.184 Atomic orbital electron populations 1.70014 1.08318 1.28809 1.50636 1.25901 0.95661 1.03251 0.93321 0.85627 0.79518 0.77767 0.79595 1.18668 1.20488 1.16620 1.20659 0.89455 0.93874 1.53045 0.94376 1.21247 0.98133 0.90357 1.00060 1.86659 1.02792 1.17323 1.98130 1.23153 0.93638 1.00309 1.06912 1.22589 0.76134 0.96565 1.04403 1.86102 1.19756 1.29313 1.86369 1.19614 0.91926 0.85695 0.89060 1.20693 0.89840 1.00230 1.05831 1.21044 1.02946 0.88096 0.90826 1.21197 0.91912 0.84130 1.21791 1.43836 1.01368 1.03154 0.96581 1.94507 0.96598 1.94148 1.54239 1.94529 1.74936 1.15926 1.55073 1.20994 0.90063 1.01461 0.90421 1.21543 1.02581 0.90174 1.08379 0.91818 0.93624 0.93738 0.88650 0.88588 0.89184 0.89214 0.80502 0.80707 0.81718 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 13.96 21.45 0.30 -56.01 16 2 C 0.02 1.05 5.47 84.66 0.46 1.51 16 3 Si 0.95 40.60 27.47 68.60 1.88 42.48 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 7 C -0.53 -29.43 9.68 25.60 0.25 -29.18 16 8 H 0.04 2.39 7.96 -2.91 -0.02 2.37 16 9 C 0.05 2.18 4.77 71.24 0.34 2.52 16 10 S -0.28 -9.89 21.66 -56.49 -1.22 -11.12 16 11 C -0.09 -2.18 6.31 71.98 0.45 -1.73 16 12 C 0.08 1.39 4.75 71.98 0.34 1.73 16 13 O -0.30 -5.05 10.14 -92.39 -0.94 -5.99 16 14 C 0.19 2.64 6.69 22.51 0.15 2.79 16 15 C -0.15 -1.69 9.99 22.36 0.22 -1.46 16 16 C -0.01 -0.13 9.55 22.25 0.21 0.08 16 17 C -0.11 -1.82 6.85 36.39 0.25 -1.57 16 18 N 0.04 0.87 4.45 -46.44 -0.21 0.66 16 19 O -0.18 -4.31 18.44 18.88 0.35 -3.96 16 20 O -0.19 -4.85 18.44 18.89 0.35 -4.50 16 21 C -0.01 -0.15 9.55 22.25 0.21 0.06 16 22 C -0.21 -2.73 9.04 22.37 0.20 -2.52 16 23 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.05 1.91 7.20 -2.39 -0.02 1.89 16 25 H 0.04 1.83 7.57 -2.39 -0.02 1.81 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.09 1.43 7.66 -2.39 -0.02 1.42 16 29 H 0.09 1.43 7.66 -2.39 -0.02 1.41 16 30 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.18 1.61 7.60 -2.91 -0.02 1.59 16 32 H 0.17 2.04 7.61 -2.91 -0.02 2.02 16 33 H 0.17 1.72 6.30 -2.91 -0.02 1.70 16 Total: -1.00 -66.52 310.16 4.68 -61.84 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.07 Total: 4.37 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 3.10 Total: -27.77 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.09 Total: -55.35 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.24 Total: -14.45 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.88 Total: 42.48 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -1.22 Total: -11.12 kcal Total: -66.52 4.68 -61.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.469 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds