Wall clock time and date at job start Tue Mar 31 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46810 * 2 1 4 4 C 1.35902 * 116.99800 * 180.02562 * 3 2 1 5 5 C 1.38600 * 120.01420 * 359.97438 * 4 3 2 6 6 C 1.38851 * 119.86415 * 180.02562 * 5 4 3 7 7 S 1.76202 * 120.05041 * 179.97438 * 6 5 4 8 8 C 1.81400 * 102.99880 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47008 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00002 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99959 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99637 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99961 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47193 * 60.00170 * 13 11 9 15 15 H 1.48495 * 109.47275 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47173 * 300.00229 * 13 11 9 17 17 C 1.39032 * 119.89762 * 0.02562 * 6 5 4 18 18 C 1.38092 * 120.03101 * 359.97438 * 17 6 5 19 19 C 1.38235 * 120.13356 * 0.28140 * 18 17 6 20 20 N 1.48003 * 119.94882 * 179.72640 * 19 18 17 21 21 O 1.21797 * 119.99777 * 359.97438 * 20 19 18 22 22 O 1.21800 * 119.99942 * 179.97438 * 20 19 18 23 23 H 1.09002 * 109.47117 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47024 * 299.99915 * 1 2 3 25 25 H 1.09001 * 109.47494 * 59.99570 * 1 2 3 26 26 H 1.09005 * 109.46867 * 240.00363 * 2 1 3 27 27 H 1.08997 * 109.47064 * 120.00250 * 2 1 3 28 28 H 1.08004 * 120.06384 * 0.05453 * 5 4 3 29 29 H 1.08998 * 109.47401 * 299.99615 * 8 7 6 30 30 H 1.08992 * 109.47299 * 60.00246 * 8 7 6 31 31 H 0.96999 * 119.99454 * 179.97438 * 12 11 9 32 32 H 1.08007 * 119.98548 * 179.97438 * 17 6 5 33 33 H 1.08002 * 119.93108 * 179.97438 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1982 0.4265 -0.0005 6 6 5.5742 0.6121 -0.0005 7 16 6.6525 -0.7815 0.0002 8 6 8.3001 -0.0226 0.0007 9 6 9.3508 -1.1030 0.0007 10 1 9.0568 -2.1422 0.0008 11 6 10.6875 -0.7647 0.0005 12 7 11.0454 0.5007 0.0009 13 14 11.9898 -2.1038 0.0012 14 1 11.8331 -2.9474 -1.2108 15 1 13.3386 -1.4826 0.0015 16 1 11.8330 -2.9461 1.2141 17 6 6.0999 1.8991 0.0000 18 6 5.2545 2.9910 -0.0001 19 6 3.8843 2.8078 0.0053 20 7 2.9820 3.9809 0.0114 21 8 3.4469 5.1067 0.0121 22 8 1.7746 3.8205 0.0156 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.7867 -0.5721 -0.0010 29 1 8.4156 0.5959 -0.8894 30 1 8.4148 0.5962 0.8905 31 1 11.9858 0.7387 0.0011 32 1 7.1701 2.0451 0.0004 33 1 5.6646 3.9901 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413468410.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:50 Heat of formation + Delta-G solvation = -31.253682 kcal Electronic energy + Delta-G solvation = -19203.095554 eV Core-core repulsion = 15937.441102 eV Total energy + Delta-G solvation = -3265.654451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.88009 -40.19083 -37.80968 -36.14256 -33.48530 -32.46104 -31.60641 -30.18441 -28.80228 -26.30192 -24.50450 -23.37640 -22.40351 -21.76367 -19.39779 -18.43984 -18.24111 -17.27842 -17.01373 -16.31862 -16.21447 -15.70197 -14.91351 -14.66265 -14.12219 -13.79669 -13.79300 -12.97027 -12.85974 -12.60381 -12.50099 -12.25762 -11.97165 -11.59274 -11.22902 -11.13205 -11.01517 -11.00906 -10.80675 -10.80361 -10.40146 -10.00700 -9.92970 -9.48811 -8.86709 -8.69526 -7.21676 -6.45899 -4.54074 0.08347 1.09171 1.54406 1.67183 1.92251 2.76061 3.12231 3.14323 3.17429 3.22573 3.30314 4.13542 4.38231 4.62231 4.67484 4.84445 4.92008 4.92111 4.97052 5.06124 5.31063 5.40021 5.56278 5.56623 5.83693 5.86075 6.06005 6.27692 6.61327 6.64213 6.67771 6.98477 7.44300 7.64436 8.01681 8.46601 9.11985 10.64932 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.003878 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.567792 B = 7217.805961 C = 8295.616566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.283 6.283 4 C 0.216 3.784 5 C -0.216 4.216 6 C 0.011 3.989 7 S -0.101 6.101 8 C 0.060 3.940 9 C -0.528 4.528 10 H 0.070 0.930 11 C 0.072 3.928 12 N -0.886 5.886 13 Si 0.911 3.089 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.272 1.272 17 C -0.173 4.173 18 C 0.002 3.998 19 C -0.109 4.109 20 N 0.047 4.953 21 O -0.196 6.196 22 O -0.155 6.155 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.150 0.850 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.271 0.729 32 H 0.156 0.844 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.285 -0.792 -0.015 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.194 6.194 4 C 0.164 3.836 5 C -0.243 4.243 6 C -0.105 4.105 7 S 0.153 5.847 8 C -0.087 4.087 9 C -0.567 4.567 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.522 5.522 13 Si 0.737 3.263 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.198 4.198 18 C -0.020 4.020 19 C -0.199 4.199 20 N 0.561 4.439 21 O -0.402 6.402 22 O -0.373 6.373 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.168 0.832 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.173 0.827 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.940 -2.370 -0.016 14.140 hybrid contribution 0.970 0.822 -0.002 1.271 sum -12.970 -1.548 -0.019 13.062 Atomic orbital electron populations 1.21755 0.92046 1.02839 1.04020 1.23014 0.96557 0.81256 1.02084 1.86380 1.16779 1.29951 1.86338 1.18379 0.83778 0.91113 0.90346 1.20775 0.91772 0.97987 1.13770 1.22494 0.97000 0.99007 0.92006 1.85675 1.04393 1.09347 1.85322 1.21622 0.85946 0.99479 1.01605 1.20503 0.89461 0.92230 1.54546 0.91221 1.24946 0.98296 0.96171 0.93974 1.69911 1.18025 1.16265 1.48017 0.86335 0.79765 0.81065 0.79124 1.19714 1.20795 1.19719 1.21371 1.01537 0.90100 1.06812 1.20776 0.88896 1.01396 0.90977 1.20324 0.90423 0.82832 1.26323 1.43282 1.01495 1.01956 0.97192 1.94496 1.80400 1.09600 1.55726 1.94536 0.96926 1.92640 1.53180 0.90226 0.91210 0.91210 0.91354 0.91350 0.83228 0.93070 0.93072 0.91956 0.82667 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.44 5.46 37.16 0.20 0.64 16 3 O -0.28 -3.89 8.14 -41.60 -0.34 -4.23 16 4 C 0.22 3.21 6.67 -39.25 -0.26 2.95 16 5 C -0.22 -3.08 8.78 -39.22 -0.34 -3.42 16 6 C 0.01 0.18 6.11 -39.06 -0.24 -0.06 16 7 S -0.10 -1.87 21.84 -107.50 -2.35 -4.22 16 8 C 0.06 1.35 4.09 36.01 0.15 1.50 16 9 C -0.53 -13.30 9.13 -34.44 -0.31 -13.62 16 10 H 0.07 1.73 7.71 -52.49 -0.40 1.33 16 11 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 12 N -0.89 -23.61 13.29 55.43 0.74 -22.87 16 13 Si 0.91 19.66 29.54 -169.99 -5.02 14.64 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 C -0.17 -2.76 9.36 -39.34 -0.37 -3.13 16 18 C 0.00 0.02 9.54 -39.64 -0.38 -0.36 16 19 C -0.11 -1.76 6.87 -79.75 -0.55 -2.30 16 20 N 0.05 0.82 4.45 34.06 0.15 0.97 16 21 O -0.20 -3.43 18.44 -29.46 -0.54 -3.98 16 22 O -0.16 -2.75 17.23 -36.50 -0.63 -3.38 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 27 H 0.07 0.58 7.66 -51.93 -0.40 0.19 16 28 H 0.15 1.79 6.30 -52.48 -0.33 1.46 16 29 H 0.05 1.19 7.75 -51.92 -0.40 0.79 16 30 H 0.05 1.19 7.75 -51.93 -0.40 0.79 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 32 H 0.16 2.56 5.87 -52.48 -0.31 2.25 16 33 H 0.16 2.06 7.60 -52.49 -0.40 1.66 16 LS Contribution 307.02 15.07 4.63 4.63 Total: -1.00 -27.64 307.02 -8.63 -36.27 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.45 Total: -1.03 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -1.82 Total: -16.81 kcal Atomic # 7 Polarization: -22.78 SS G_CDS: 0.89 Total: -21.90 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.51 Total: -11.59 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.35 Total: -4.22 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.64 -8.63 -36.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413468410.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.015 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds