Wall clock time and date at job start Tue Mar 31 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46810 * 2 1 4 4 C 1.35902 * 116.99800 * 180.02562 * 3 2 1 5 5 C 1.38600 * 120.01420 * 359.97438 * 4 3 2 6 6 C 1.38851 * 119.86415 * 180.02562 * 5 4 3 7 7 S 1.76202 * 120.05041 * 179.97438 * 6 5 4 8 8 C 1.81400 * 102.99880 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47008 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00002 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99959 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99637 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99961 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47193 * 60.00170 * 13 11 9 15 15 H 1.48495 * 109.47275 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47173 * 300.00229 * 13 11 9 17 17 C 1.39032 * 119.89762 * 0.02562 * 6 5 4 18 18 C 1.38092 * 120.03101 * 359.97438 * 17 6 5 19 19 C 1.38235 * 120.13356 * 0.28140 * 18 17 6 20 20 N 1.48003 * 119.94882 * 179.72640 * 19 18 17 21 21 O 1.21797 * 119.99777 * 359.97438 * 20 19 18 22 22 O 1.21800 * 119.99942 * 179.97438 * 20 19 18 23 23 H 1.09002 * 109.47117 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47024 * 299.99915 * 1 2 3 25 25 H 1.09001 * 109.47494 * 59.99570 * 1 2 3 26 26 H 1.09005 * 109.46867 * 240.00363 * 2 1 3 27 27 H 1.08997 * 109.47064 * 120.00250 * 2 1 3 28 28 H 1.08004 * 120.06384 * 0.05453 * 5 4 3 29 29 H 1.08998 * 109.47401 * 299.99615 * 8 7 6 30 30 H 1.08992 * 109.47299 * 60.00246 * 8 7 6 31 31 H 0.96999 * 119.99454 * 179.97438 * 12 11 9 32 32 H 1.08007 * 119.98548 * 179.97438 * 17 6 5 33 33 H 1.08002 * 119.93108 * 179.97438 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1982 0.4265 -0.0005 6 6 5.5742 0.6121 -0.0005 7 16 6.6525 -0.7815 0.0002 8 6 8.3001 -0.0226 0.0007 9 6 9.3508 -1.1030 0.0007 10 1 9.0568 -2.1422 0.0008 11 6 10.6875 -0.7647 0.0005 12 7 11.0454 0.5007 0.0009 13 14 11.9898 -2.1038 0.0012 14 1 11.8331 -2.9474 -1.2108 15 1 13.3386 -1.4826 0.0015 16 1 11.8330 -2.9461 1.2141 17 6 6.0999 1.8991 0.0000 18 6 5.2545 2.9910 -0.0001 19 6 3.8843 2.8078 0.0053 20 7 2.9820 3.9809 0.0114 21 8 3.4469 5.1067 0.0121 22 8 1.7746 3.8205 0.0156 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.7867 -0.5721 -0.0010 29 1 8.4156 0.5959 -0.8894 30 1 8.4148 0.5962 0.8905 31 1 11.9858 0.7387 0.0011 32 1 7.1701 2.0451 0.0004 33 1 5.6646 3.9901 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413468410.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:50 Heat of formation + Delta-G solvation = -43.723402 kcal Electronic energy + Delta-G solvation = -19203.636281 eV Core-core repulsion = 15937.441102 eV Total energy + Delta-G solvation = -3266.195179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.20431 -41.34171 -38.95522 -37.49824 -35.38791 -33.50836 -32.66119 -31.43482 -30.52431 -27.63833 -25.69483 -24.94466 -23.68377 -22.81285 -20.62065 -19.76550 -19.53276 -18.72849 -18.60169 -17.61150 -17.23972 -16.99475 -16.58602 -15.89989 -15.50929 -14.96936 -14.91544 -14.44460 -14.40091 -13.92904 -13.49207 -13.38163 -13.10726 -12.75353 -12.70660 -12.60592 -12.45680 -12.34858 -12.19716 -11.89908 -11.89183 -11.69706 -11.28604 -11.14467 -10.75716 -9.86453 -8.67496 -8.38750 -6.53325 -1.22823 -0.10546 0.21227 0.31989 0.54189 1.42441 1.43174 1.50210 1.56603 1.77091 2.06113 2.33774 2.98061 3.22197 3.54249 3.70425 3.79279 4.00263 4.01427 4.23218 4.32132 4.35977 4.61070 4.79260 4.79970 4.82257 4.83532 4.94360 5.04764 5.24438 5.34811 5.49829 5.76347 5.94227 6.53619 6.63780 7.16672 8.72514 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.003878 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.567792 B = 7217.805961 C = 8295.616566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.032 3.968 3 O -0.295 6.295 4 C 0.222 3.778 5 C -0.201 4.201 6 C 0.002 3.998 7 S -0.083 6.083 8 C 0.059 3.941 9 C -0.545 4.545 10 H 0.070 0.930 11 C 0.023 3.977 12 N -0.919 5.919 13 Si 0.973 3.027 14 H -0.265 1.265 15 H -0.280 1.280 16 H -0.266 1.266 17 C -0.180 4.180 18 C 0.009 3.991 19 C -0.120 4.120 20 N 0.047 4.953 21 O -0.205 6.205 22 O -0.164 6.164 23 H 0.106 0.894 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.178 0.822 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.272 0.728 32 H 0.145 0.855 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.382 -2.248 -0.018 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.042 4.042 3 O -0.206 6.206 4 C 0.169 3.831 5 C -0.227 4.227 6 C -0.114 4.114 7 S 0.169 5.831 8 C -0.088 4.088 9 C -0.584 4.584 10 H 0.088 0.912 11 C -0.180 4.180 12 N -0.556 5.556 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.205 4.205 18 C -0.013 4.013 19 C -0.210 4.210 20 N 0.558 4.442 21 O -0.410 6.410 22 O -0.381 6.381 23 H 0.125 0.875 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.195 0.805 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.078 -3.812 -0.019 15.553 hybrid contribution 1.123 1.298 -0.002 1.716 sum -13.956 -2.514 -0.021 14.180 Atomic orbital electron populations 1.21803 0.90604 1.04454 1.03504 1.23447 0.97770 0.79492 1.03487 1.86405 1.15788 1.32763 1.85655 1.18416 0.84638 0.90637 0.89403 1.20948 0.90564 0.99127 1.12107 1.22477 0.97494 0.98212 0.93228 1.85343 1.01791 1.09378 1.86596 1.21294 0.88777 0.98769 0.99956 1.20882 0.90559 0.92843 1.54149 0.91175 1.25813 1.00471 0.98161 0.93520 1.70016 1.18433 1.18072 1.49106 0.85373 0.77126 0.78494 0.79410 1.19015 1.20530 1.19030 1.21280 1.01167 0.90487 1.07523 1.20857 0.88512 1.01841 0.90101 1.20539 0.90579 0.82927 1.26912 1.43441 1.01581 1.02218 0.96964 1.94488 1.80372 1.10103 1.56038 1.94524 0.97299 1.92715 1.53533 0.87511 0.91741 0.91733 0.89889 0.89893 0.80503 0.94751 0.94752 0.91895 0.83765 0.81062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.03 0.51 5.46 71.98 0.39 0.90 16 3 O -0.29 -7.46 8.14 -71.25 -0.58 -8.03 16 4 C 0.22 6.16 6.67 22.49 0.15 6.31 16 5 C -0.20 -5.25 8.78 22.50 0.20 -5.05 16 6 C 0.00 0.06 6.11 22.61 0.14 0.20 16 7 S -0.08 -3.02 21.84 -56.49 -1.23 -4.25 16 8 C 0.06 2.73 4.09 71.24 0.29 3.02 16 9 C -0.55 -27.68 9.13 25.60 0.23 -27.44 16 10 H 0.07 3.46 7.71 -2.91 -0.02 3.44 16 11 C 0.02 1.17 5.46 84.66 0.46 1.63 16 12 N -0.92 -49.78 13.29 21.45 0.28 -49.49 16 13 Si 0.97 40.03 29.54 68.60 2.03 42.06 16 14 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 15 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 17 C -0.18 -5.69 9.36 22.43 0.21 -5.48 16 18 C 0.01 0.25 9.54 22.23 0.21 0.46 16 19 C -0.12 -3.71 6.87 36.51 0.25 -3.46 16 20 N 0.05 1.59 4.45 -46.16 -0.21 1.38 16 21 O -0.20 -7.04 18.44 18.89 0.35 -6.69 16 22 O -0.16 -5.68 17.23 25.62 0.44 -5.24 16 23 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.12 7.66 -2.38 -0.02 1.10 16 27 H 0.08 1.12 7.66 -2.39 -0.02 1.10 16 28 H 0.18 3.59 6.30 -2.91 -0.02 3.57 16 29 H 0.03 1.66 7.75 -2.39 -0.02 1.64 16 30 H 0.03 1.66 7.75 -2.39 -0.02 1.64 16 31 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.14 4.91 5.87 -2.91 -0.02 4.90 16 33 H 0.17 4.40 7.60 -2.91 -0.02 4.37 16 Total: -1.00 -58.71 307.02 5.50 -53.21 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.14 Total: 7.07 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 3.28 Total: -30.01 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.08 Total: -48.11 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.21 Total: -19.96 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -1.23 Total: -4.25 kcal Total: -58.71 5.50 -53.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413468410.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.486 kcal (2) G-P(sol) polarization free energy of solvation -58.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds