Wall clock time and date at job start Tue Mar 31 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99933 * 2 1 4 4 H 1.48496 * 109.46930 * 269.99792 * 3 2 1 5 5 H 1.48503 * 109.46739 * 29.99862 * 3 2 1 6 6 H 1.48498 * 109.47047 * 149.99499 * 3 2 1 7 7 C 1.37879 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00124 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99687 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46793 * 179.97438 * 9 7 2 11 11 S 1.65597 * 119.99791 * 165.00139 * 10 9 7 12 12 O 1.42102 * 106.40060 * 178.54054 * 11 10 9 13 13 O 1.42101 * 106.40207 * 311.45359 * 11 10 9 14 14 C 1.76196 * 107.22133 * 64.99502 * 11 10 9 15 15 C 1.37978 * 119.87827 * 114.72663 * 14 11 10 16 16 C 1.38241 * 120.34988 * 179.81887 * 15 14 11 17 17 C 1.38395 * 119.77019 * 0.39748 * 16 15 14 18 18 C 1.37697 * 119.97204 * 359.67833 * 17 16 15 19 19 C 1.38928 * 120.79004 * 0.30944 * 18 17 16 20 20 O 1.36136 * 111.22655 * 179.28854 * 19 18 17 21 21 C 1.43763 * 109.26640 * 18.86240 * 20 19 18 22 22 C 1.51648 * 132.17579 * 180.54327 * 18 17 16 23 23 H 0.96995 * 120.00272 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47498 * 59.99864 * 9 7 2 25 25 H 1.09002 * 109.46794 * 299.99361 * 9 7 2 26 26 H 0.96995 * 120.00050 * 344.72224 * 10 9 7 27 27 H 1.08000 * 119.82516 * 0.07517 * 15 14 11 28 28 H 1.08000 * 120.11496 * 180.12370 * 16 15 14 29 29 H 1.07998 * 120.01222 * 179.70005 * 17 16 15 30 30 H 1.08998 * 110.75222 * 90.64684 * 21 20 19 31 31 H 1.09002 * 110.74928 * 213.81644 * 21 20 19 32 32 H 1.09006 * 110.93372 * 46.12932 * 22 18 17 33 33 H 1.08994 * 110.97298 * 282.45731 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 16 1.6883 -5.1422 0.3717 12 8 2.8240 -5.9879 0.2517 13 8 0.9254 -5.0302 1.5653 14 6 0.5647 -5.6355 -0.8926 15 6 0.8878 -6.6849 -1.7282 16 6 0.0118 -7.0825 -2.7210 17 6 -1.1917 -6.4184 -2.8819 18 6 -1.5155 -5.3700 -2.0500 19 6 -0.6436 -4.9614 -1.0486 20 8 -1.1492 -3.9040 -0.3560 21 6 -2.5684 -3.8297 -0.5732 22 6 -2.7353 -4.4725 -1.9705 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 3.1342 -3.4547 -0.2208 27 1 1.8282 -7.2010 -1.6034 28 1 0.2677 -7.9057 -3.3717 29 1 -1.8768 -6.7227 -3.6593 30 1 -3.1053 -4.4032 0.1823 31 1 -2.9043 -2.7927 -0.5797 32 1 -3.6534 -5.0577 -2.0230 33 1 -2.7135 -3.7144 -2.7533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420737094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:35 Heat of formation + Delta-G solvation = -78.671087 kcal Electronic energy + Delta-G solvation = -20695.707785 eV Core-core repulsion = 17427.997161 eV Total energy + Delta-G solvation = -3267.710624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99224 -37.40324 -36.49618 -35.20792 -34.51696 -32.72882 -32.06961 -30.14912 -29.15495 -26.64512 -23.63669 -22.57033 -22.37382 -21.88006 -18.74470 -17.77984 -17.23016 -16.85967 -16.33013 -15.83490 -15.73535 -15.23955 -14.92054 -14.48517 -13.56118 -13.45045 -13.27125 -12.99976 -12.69719 -12.42289 -12.13970 -12.00058 -11.74260 -11.71748 -11.47535 -11.41188 -11.34634 -10.91795 -10.76626 -10.69608 -10.27891 -10.04119 -9.32433 -9.22195 -8.82099 -8.16472 -8.06157 -6.10515 -4.14215 0.89253 1.16966 1.37280 3.27788 3.33111 3.34205 3.38101 3.49745 3.86795 4.28378 4.39062 4.42827 4.60721 4.84480 5.06523 5.09298 5.14853 5.25607 5.34634 5.48621 5.65687 5.74358 5.84214 5.96503 6.12091 6.21559 6.35082 6.59271 6.62098 7.19953 7.45574 7.51770 7.88258 7.93150 8.28195 8.90156 9.49189 10.99179 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.006962 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.265106 B = 4021.142852 C = 4950.489649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.064 0.936 9 C 0.250 3.750 10 N -1.103 6.103 11 S 2.693 3.307 12 O -0.984 6.984 13 O -0.957 6.957 14 C -0.694 4.694 15 C 0.005 3.995 16 C -0.178 4.178 17 C -0.024 4.024 18 C -0.201 4.201 19 C 0.214 3.786 20 O -0.266 6.266 21 C 0.050 3.950 22 C -0.107 4.107 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.043 0.957 26 H 0.409 0.591 27 H 0.148 0.852 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 -11.080 -6.463 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.866 5.866 11 S 2.781 3.219 12 O -0.974 6.974 13 O -0.946 6.946 14 C -0.779 4.779 15 C -0.014 4.014 16 C -0.197 4.197 17 C -0.042 4.042 18 C -0.202 4.202 19 C 0.164 3.836 20 O -0.177 6.177 21 C -0.025 4.025 22 C -0.144 4.144 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.243 0.757 27 H 0.165 0.835 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.508 -11.296 -5.538 13.734 hybrid contribution 0.155 1.110 -1.008 1.508 sum -5.353 -10.186 -6.546 13.239 Atomic orbital electron populations 1.69959 1.05925 1.26892 1.49721 1.24939 0.94971 0.99200 0.94994 0.86468 0.79827 0.82855 0.78069 1.20653 1.21088 1.19745 1.21258 0.93390 0.90159 1.52050 0.91793 1.19124 0.87286 0.82902 0.97933 1.55463 1.19585 1.23913 1.87602 1.01758 0.73134 0.72797 0.74244 1.93499 1.49587 1.66938 1.87407 1.93574 1.72493 1.86175 1.42404 1.30178 1.13073 1.09400 1.25270 1.20714 0.98609 0.91493 0.90612 1.21062 0.95012 1.02714 1.00943 1.20493 0.95853 0.92028 0.95828 1.20904 0.98847 1.00906 0.99582 1.18986 0.91944 0.84333 0.88290 1.87241 1.22905 1.41281 1.66247 1.23959 0.79300 1.03837 0.95391 1.21820 0.96181 0.97827 0.98604 0.92761 0.95683 0.93910 0.75667 0.83485 0.84926 0.85477 0.90288 0.86419 0.89142 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.56 9.27 -34.44 -0.32 -14.88 16 8 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 9 C 0.25 6.47 4.47 -5.19 -0.02 6.45 16 10 N -1.10 -24.06 5.99 -11.65 -0.07 -24.13 16 11 S 2.69 54.98 5.64 -107.50 -0.61 54.37 16 12 O -0.98 -19.99 16.95 -57.17 -0.97 -20.96 16 13 O -0.96 -22.49 17.40 -57.17 -1.00 -23.49 16 14 C -0.69 -12.70 5.91 -39.31 -0.23 -12.93 16 15 C 0.00 0.07 9.52 -39.68 -0.38 -0.30 16 16 C -0.18 -2.23 10.07 -39.52 -0.40 -2.63 16 17 C -0.02 -0.30 10.03 -39.72 -0.40 -0.69 16 18 C -0.20 -3.00 6.27 -104.10 -0.65 -3.65 16 19 C 0.21 3.96 6.13 -38.96 -0.24 3.72 16 20 O -0.27 -5.32 8.25 -20.17 -0.17 -5.49 16 21 C 0.05 0.73 8.01 38.06 0.30 1.03 16 22 C -0.11 -1.31 7.12 -26.52 -0.19 -1.50 16 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.03 0.67 6.65 -51.93 -0.35 0.33 16 25 H 0.04 1.21 7.48 -51.93 -0.39 0.82 16 26 H 0.41 8.07 8.54 -34.47 -0.29 7.78 16 27 H 0.15 1.96 7.30 -52.49 -0.38 1.58 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -34.06 295.24 -8.75 -42.81 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.48 Total: 4.65 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.62 Total: -23.77 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.67 Total: -48.59 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -2.13 Total: -49.93 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.61 Total: 54.37 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.06 -8.75 -42.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420737094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.864 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds