Wall clock time and date at job start Tue Mar 31 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99968 * 2 1 4 4 H 1.48494 * 109.47439 * 269.99966 * 3 2 1 5 5 H 1.48504 * 109.46959 * 30.00291 * 3 2 1 6 6 H 1.48503 * 109.46846 * 149.99822 * 3 2 1 7 7 C 1.38796 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00086 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99986 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47066 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99917 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00083 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99897 * 184.87318 * 13 11 10 15 15 C 1.53004 * 112.85277 * 284.31281 * 14 13 11 16 16 F 1.39896 * 109.46984 * 194.80363 * 15 14 13 17 17 F 1.39897 * 109.46940 * 314.80141 * 15 14 13 18 18 F 1.39892 * 109.46974 * 74.80385 * 15 14 13 19 19 C 1.53787 * 113.61488 * 55.51038 * 14 13 11 20 20 C 1.53784 * 87.08097 * 89.19807 * 19 14 13 21 21 C 1.53775 * 87.17082 * 25.39028 * 20 19 14 22 22 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47622 * 59.99968 * 10 9 7 24 24 H 1.09000 * 109.47084 * 299.99384 * 10 9 7 25 25 H 0.96996 * 120.00125 * 4.88078 * 13 11 10 26 26 H 1.09003 * 113.61139 * 334.64900 * 19 14 13 27 27 H 1.08996 * 113.61820 * 203.74567 * 19 14 13 28 28 H 1.08997 * 113.61257 * 139.98585 * 20 19 14 29 29 H 1.08999 * 113.61381 * 270.80294 * 20 19 14 30 30 H 1.09002 * 113.61493 * 89.16123 * 21 20 19 31 31 H 1.09003 * 113.61586 * 220.05725 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3026 0.0012 12 8 0.7911 -5.5022 0.0021 13 7 2.8442 -6.3430 0.0008 14 6 2.3340 -7.7121 -0.1064 15 6 1.7124 -8.2183 1.1968 16 9 1.5593 -9.6073 1.1317 17 9 2.5482 -7.8911 2.2700 18 9 0.4616 -7.6193 1.3804 19 6 1.4486 -7.9446 -1.3422 20 6 2.7365 -8.3108 -2.0986 21 6 3.3364 -8.6963 -0.7361 22 1 -0.4850 0.8400 -0.0004 23 1 3.1245 -3.7313 0.8905 24 1 3.1244 -3.7313 -0.8895 25 1 3.7987 -6.1854 0.0715 26 1 0.9678 -7.0387 -1.7115 27 1 0.7550 -8.7782 -1.2319 28 1 2.6186 -9.1546 -2.7784 29 1 3.2266 -7.4564 -2.5654 30 1 3.1600 -9.7358 -0.4598 31 1 4.3776 -8.3965 -0.6169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441567149.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:56 Heat of formation + Delta-G solvation = -191.091758 kcal Electronic energy + Delta-G solvation = -20689.548626 eV Core-core repulsion = 16875.106336 eV Total energy + Delta-G solvation = -3814.442291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.10639 -48.65614 -48.55718 -41.47887 -39.07309 -34.60569 -34.51539 -30.94661 -28.75537 -27.64785 -26.96938 -24.24923 -22.24321 -20.70350 -19.88203 -19.44257 -19.33210 -19.08563 -17.86119 -16.99517 -16.87725 -16.45946 -16.07912 -15.57988 -15.47978 -15.36797 -15.03536 -14.88907 -14.76221 -14.71044 -14.54482 -14.04175 -13.68540 -13.39437 -13.18106 -13.16410 -12.88958 -12.61599 -12.12259 -11.94611 -11.73323 -11.64366 -11.14173 -10.92333 -10.40469 -10.27983 -8.66846 -8.34853 -6.12846 1.19888 1.36493 1.42852 1.44041 1.55293 1.79595 2.01664 2.27053 2.70095 2.79408 2.99792 3.06641 3.26934 3.46070 3.59638 3.71202 3.89676 4.20287 4.28172 4.49366 4.59637 4.69154 4.85644 4.94700 5.03653 5.07497 5.39851 5.42044 6.19667 6.31213 7.06779 7.09544 8.74325 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.034671 B = 0.004177 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.395481 B = 6701.721783 C = 6898.288153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.148 6.148 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.534 6.534 13 N -0.689 5.689 14 C 0.092 3.908 15 C 0.438 3.562 16 F -0.174 7.174 17 F -0.189 7.189 18 F -0.189 7.189 19 C -0.140 4.140 20 C -0.118 4.118 21 C -0.110 4.110 22 H 0.271 0.729 23 H 0.109 0.891 24 H 0.117 0.883 25 H 0.427 0.573 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.712 -19.171 -2.713 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.079 5.921 10 C -0.279 4.279 11 C 0.319 3.681 12 O -0.408 6.408 13 N -0.346 5.346 14 C 0.002 3.998 15 C 0.382 3.618 16 F -0.156 7.156 17 F -0.171 7.171 18 F -0.171 7.171 19 C -0.178 4.178 20 C -0.155 4.155 21 C -0.147 4.147 22 H 0.080 0.920 23 H 0.127 0.873 24 H 0.135 0.865 25 H 0.267 0.733 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.568 -19.402 -2.693 21.800 hybrid contribution 1.384 1.421 0.689 2.100 sum 10.951 -17.981 -2.005 21.149 Atomic orbital electron populations 1.70182 1.08016 1.28614 1.48052 1.26112 0.95915 1.03308 0.93715 0.84960 0.78195 0.76043 0.78827 1.19199 1.20475 1.18179 1.23211 0.95393 0.91972 1.58843 0.89792 1.85622 1.10217 0.99167 1.97061 1.23346 1.03773 0.93653 1.07101 1.20250 0.86423 0.86581 0.74832 1.90770 1.16825 1.85676 1.47579 1.45289 1.11140 1.02174 1.75964 1.22903 1.01606 0.85988 0.89330 1.21384 0.76890 0.75554 0.87953 1.93137 1.95712 1.30228 1.96508 1.93144 1.71565 1.92444 1.59908 1.93246 1.44205 1.83580 1.96035 1.23302 0.98467 1.02983 0.93019 1.22779 0.93567 1.03047 0.96127 1.23398 0.98725 0.98293 0.94280 0.92012 0.87292 0.86509 0.73278 0.91759 0.87869 0.87750 0.89062 0.85957 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.17 29.55 68.60 2.03 45.20 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.55 -30.76 9.50 67.95 0.65 -30.11 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 10 C -0.13 -4.83 6.16 71.24 0.44 -4.39 16 11 C 0.53 18.70 7.36 87.66 0.65 19.34 16 12 O -0.53 -23.57 12.58 -3.05 -0.04 -23.61 16 13 N -0.69 -16.24 4.88 -420.26 -2.05 -18.29 16 14 C 0.09 1.99 0.73 4.19 0.00 2.00 16 15 C 0.44 11.74 2.80 71.98 0.20 11.94 16 16 F -0.17 -3.97 15.80 44.97 0.71 -3.25 16 17 F -0.19 -5.20 17.08 44.97 0.77 -4.43 16 18 F -0.19 -6.76 15.22 44.97 0.68 -6.08 16 19 C -0.14 -3.03 6.62 31.12 0.21 -2.83 16 20 C -0.12 -1.51 7.99 31.12 0.25 -1.26 16 21 C -0.11 -1.26 7.28 31.18 0.23 -1.03 16 22 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 23 H 0.11 3.75 8.14 -2.40 -0.02 3.74 16 24 H 0.12 3.86 8.14 -2.40 -0.02 3.84 16 25 H 0.43 6.73 8.76 -92.71 -0.81 5.92 16 26 H 0.06 1.88 6.69 -2.39 -0.02 1.86 16 27 H 0.10 2.07 8.01 -2.39 -0.02 2.05 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 1.14 7.05 -2.39 -0.02 1.13 16 31 H 0.11 0.78 8.13 -2.39 -0.02 0.76 16 Total: -1.00 -75.93 291.48 4.67 -71.25 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.37 Total: 9.09 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 3.08 Total: -5.08 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -1.76 Total: -73.86 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.04 Total: -23.61 kcal Atomic # 9 Polarization: -15.93 SS G_CDS: 2.16 Total: -13.77 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -75.93 4.67 -71.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441567149.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.840 kcal (2) G-P(sol) polarization free energy of solvation -75.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds