Wall clock time and date at job start Tue Mar 31 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34219 * 117.00256 * 2 1 4 4 O 1.20824 * 120.00427 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00058 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47113 * 179.97438 * 5 3 2 7 7 C 1.36888 * 120.00365 * 90.00423 * 6 5 3 8 8 H 1.08005 * 119.99958 * 224.64537 * 7 6 5 9 9 C 1.38997 * 120.00013 * 44.63133 * 7 6 5 10 10 N 1.31389 * 120.00362 * 11.58724 * 9 7 6 11 11 Si 1.86806 * 119.99986 * 191.58266 * 9 7 6 12 12 H 1.48496 * 109.47128 * 90.00156 * 11 9 7 13 13 H 1.48496 * 109.47089 * 210.00677 * 11 9 7 14 14 H 1.48506 * 109.46891 * 330.00313 * 11 9 7 15 15 C 1.34780 * 119.99985 * 269.99214 * 6 5 3 16 16 O 1.21741 * 119.99712 * 5.53231 * 15 6 5 17 17 C 1.46460 * 120.00298 * 185.52072 * 15 6 5 18 18 C 1.36767 * 125.46352 * 186.27132 * 17 15 6 19 19 C 1.37439 * 113.27834 * 180.02562 * 18 17 15 20 20 C 1.50697 * 122.44710 * 179.97438 * 19 18 17 21 21 C 1.33852 * 115.10655 * 0.02562 * 19 18 17 22 22 S 1.70613 * 110.97044 * 359.72641 * 21 19 18 23 23 H 1.09004 * 109.46751 * 300.00620 * 1 2 3 24 24 H 1.08994 * 109.46760 * 59.99983 * 1 2 3 25 25 H 1.08998 * 109.47400 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47436 * 59.99656 * 5 3 2 27 27 H 1.08999 * 109.46938 * 299.99787 * 5 3 2 28 28 H 0.97000 * 120.00626 * 174.98436 * 10 9 7 29 29 H 1.07996 * 123.35946 * 0.04106 * 18 17 15 30 30 H 1.08998 * 109.47400 * 89.99985 * 20 19 18 31 31 H 1.09004 * 109.47209 * 210.00184 * 20 19 18 32 32 H 1.09001 * 109.47093 * 329.99602 * 20 19 18 33 33 H 1.08007 * 124.51461 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.1764 3.3362 1.1841 8 1 3.7862 4.3342 1.3190 9 6 4.8761 2.7185 2.2142 10 7 5.5430 1.6103 1.9832 11 14 4.8682 3.4640 3.9270 12 1 3.7293 2.9104 4.7026 13 1 6.1422 3.1357 4.6156 14 1 4.7268 4.9388 3.8243 15 6 4.1726 3.3254 -1.1685 16 8 3.9035 2.7743 -2.2201 17 6 4.7035 4.6904 -1.1721 18 6 4.8271 5.4909 -2.2741 19 6 5.3573 6.7269 -1.9909 20 6 5.5838 7.7720 -3.0527 21 6 5.6588 6.9341 -0.7034 22 16 5.2788 5.5648 0.2408 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.9558 0.7807 -0.8908 27 1 3.9564 0.7804 0.8892 28 1 6.0900 1.2187 2.6820 29 1 4.5368 5.1826 -3.2676 30 1 4.6928 8.3927 -3.1475 31 1 6.4330 8.3957 -2.7734 32 1 5.7895 7.2837 -4.0052 33 1 6.0822 7.8480 -0.3134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449956068.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:55 Heat of formation + Delta-G solvation = -86.169622 kcal Electronic energy + Delta-G solvation = -20268.345594 eV Core-core repulsion = 17000.309809 eV Total energy + Delta-G solvation = -3268.035785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.83185 -38.59007 -37.22655 -35.73285 -34.85853 -31.88350 -30.47970 -28.75919 -27.19864 -26.40907 -25.22326 -23.07396 -20.61073 -19.55901 -18.33781 -17.89481 -17.00698 -16.66253 -15.80877 -15.56721 -15.24087 -14.81376 -14.49300 -13.88134 -13.67845 -13.30209 -12.88884 -12.72770 -12.61578 -12.49124 -11.82953 -11.64094 -11.53265 -11.42626 -11.39145 -11.27268 -11.15447 -10.89030 -10.50063 -10.25288 -9.98965 -9.72269 -9.24301 -8.86708 -8.04278 -7.73454 -7.48862 -6.73448 -4.52609 1.44760 2.54798 2.91063 3.04831 3.05578 3.07913 3.08991 3.10079 3.33388 3.85896 4.25097 4.56600 4.78730 5.43877 5.50511 5.54662 5.59025 5.61427 5.86027 5.89917 5.92695 6.03000 6.15129 6.27794 6.35302 6.63735 6.73811 6.99565 7.05923 7.12820 7.17658 7.55616 7.99111 8.54786 8.70586 9.13158 9.58156 10.28237 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.007738 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.067238 B = 3617.404709 C = 5004.977249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.445 3.555 4 O -0.503 6.503 5 C 0.127 3.873 6 N -0.423 5.423 7 C -0.337 4.337 8 H 0.102 0.898 9 C 0.059 3.941 10 N -0.848 5.848 11 Si 0.913 3.087 12 H -0.270 1.270 13 H -0.275 1.275 14 H -0.257 1.257 15 C 0.555 3.445 16 O -0.588 6.588 17 C -0.220 4.220 18 C -0.096 4.096 19 C -0.127 4.127 20 C -0.088 4.088 21 C -0.323 4.323 22 S 0.294 5.706 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.146 0.854 28 H 0.281 0.719 29 H 0.137 0.863 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 2.789 0.133 2.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.287 3.713 4 O -0.389 6.389 5 C 0.001 3.999 6 N -0.141 5.141 7 C -0.471 4.471 8 H 0.119 0.881 9 C -0.151 4.151 10 N -0.482 5.482 11 Si 0.737 3.263 12 H -0.195 1.195 13 H -0.200 1.200 14 H -0.181 1.181 15 C 0.346 3.654 16 O -0.474 6.474 17 C -0.341 4.341 18 C -0.129 4.129 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.460 4.460 22 S 0.569 5.431 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.120 0.880 27 H 0.163 0.837 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.174 2.362 1.295 2.939 hybrid contribution -0.347 0.787 -0.660 1.084 sum -1.521 3.149 0.636 3.554 Atomic orbital electron populations 1.23090 0.78091 1.02612 1.01999 1.86544 1.22226 1.34841 1.84965 1.25294 0.93564 0.80886 0.71599 1.90584 1.66995 1.36395 1.44923 1.21065 0.84333 0.87324 1.07146 1.42790 1.57400 1.08990 1.04942 1.19460 1.35949 1.01066 0.90594 0.88116 1.25622 0.93278 0.95628 1.00614 1.69676 1.24710 1.18610 1.35156 0.86097 0.78470 0.80602 0.81098 1.19540 1.19990 1.18064 1.17263 0.79771 0.84626 0.83760 1.90671 1.56578 1.68334 1.31812 1.24497 1.12163 0.99567 0.97842 1.20365 1.01145 0.92596 0.98839 1.18492 1.04691 0.96157 0.94659 1.20428 1.00949 0.96633 0.96708 1.26249 1.10777 1.08222 1.00771 1.84380 1.52485 0.99615 1.06589 0.92487 0.92517 0.88899 0.87991 0.83732 0.90798 0.84528 0.92214 0.92461 0.92188 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.11 10.56 -39.23 -0.41 -7.53 16 3 C 0.44 10.12 8.02 36.01 0.29 10.41 16 4 O -0.50 -12.71 16.18 -18.75 -0.30 -13.01 16 5 C 0.13 2.96 5.53 -5.19 -0.03 2.93 16 6 N -0.42 -10.64 1.96 -117.66 -0.23 -10.87 16 7 C -0.34 -8.19 6.66 -15.01 -0.10 -8.29 16 8 H 0.10 2.43 5.78 -38.21 -0.22 2.21 16 9 C 0.06 1.37 5.13 -17.46 -0.09 1.28 16 10 N -0.85 -20.09 11.38 55.50 0.63 -19.46 16 11 Si 0.91 17.97 29.57 -169.99 -5.03 12.94 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 14 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 15 C 0.56 14.33 7.58 -12.95 -0.10 14.23 16 16 O -0.59 -16.18 16.49 5.15 0.08 -16.09 16 17 C -0.22 -5.04 6.28 -36.80 -0.23 -5.28 16 18 C -0.10 -1.98 9.80 -40.40 -0.40 -2.38 16 19 C -0.13 -2.27 5.78 -106.45 -0.62 -2.88 16 20 C -0.09 -1.22 10.13 36.00 0.36 -0.86 16 21 C -0.32 -5.67 10.67 29.19 0.31 -5.36 16 22 S 0.29 5.88 18.54 -107.50 -1.99 3.89 16 23 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 24 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.10 2.32 7.50 -51.93 -0.39 1.93 16 27 H 0.15 3.36 5.68 -51.93 -0.29 3.07 16 28 H 0.28 6.21 8.32 -40.82 -0.34 5.87 16 29 H 0.14 2.73 8.06 -52.49 -0.42 2.31 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 304.34 15.07 4.59 4.59 Total: -1.00 -29.30 304.34 -5.61 -34.91 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.42 Total: 5.21 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 0.47 Total: 5.42 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.40 Total: -30.33 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.63 Total: -36.63 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.99 Total: 3.89 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.30 -5.61 -34.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449956068.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.258 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds