Wall clock time and date at job start Tue Mar 31 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34219 * 117.00256 * 2 1 4 4 O 1.20824 * 120.00427 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00058 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47113 * 179.97438 * 5 3 2 7 7 C 1.36888 * 120.00365 * 90.00423 * 6 5 3 8 8 H 1.08005 * 119.99958 * 224.64537 * 7 6 5 9 9 C 1.38997 * 120.00013 * 44.63133 * 7 6 5 10 10 N 1.31389 * 120.00362 * 11.58724 * 9 7 6 11 11 Si 1.86806 * 119.99986 * 191.58266 * 9 7 6 12 12 H 1.48496 * 109.47128 * 90.00156 * 11 9 7 13 13 H 1.48496 * 109.47089 * 210.00677 * 11 9 7 14 14 H 1.48506 * 109.46891 * 330.00313 * 11 9 7 15 15 C 1.34780 * 119.99985 * 269.99214 * 6 5 3 16 16 O 1.21741 * 119.99712 * 5.53231 * 15 6 5 17 17 C 1.46460 * 120.00298 * 185.52072 * 15 6 5 18 18 C 1.36767 * 125.46352 * 186.27132 * 17 15 6 19 19 C 1.37439 * 113.27834 * 180.02562 * 18 17 15 20 20 C 1.50697 * 122.44710 * 179.97438 * 19 18 17 21 21 C 1.33852 * 115.10655 * 0.02562 * 19 18 17 22 22 S 1.70613 * 110.97044 * 359.72641 * 21 19 18 23 23 H 1.09004 * 109.46751 * 300.00620 * 1 2 3 24 24 H 1.08994 * 109.46760 * 59.99983 * 1 2 3 25 25 H 1.08998 * 109.47400 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47436 * 59.99656 * 5 3 2 27 27 H 1.08999 * 109.46938 * 299.99787 * 5 3 2 28 28 H 0.97000 * 120.00626 * 174.98436 * 10 9 7 29 29 H 1.07996 * 123.35946 * 0.04106 * 18 17 15 30 30 H 1.08998 * 109.47400 * 89.99985 * 20 19 18 31 31 H 1.09004 * 109.47209 * 210.00184 * 20 19 18 32 32 H 1.09001 * 109.47093 * 329.99602 * 20 19 18 33 33 H 1.08007 * 124.51461 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.1764 3.3362 1.1841 8 1 3.7862 4.3342 1.3190 9 6 4.8761 2.7185 2.2142 10 7 5.5430 1.6103 1.9832 11 14 4.8682 3.4640 3.9270 12 1 3.7293 2.9104 4.7026 13 1 6.1422 3.1357 4.6156 14 1 4.7268 4.9388 3.8243 15 6 4.1726 3.3254 -1.1685 16 8 3.9035 2.7743 -2.2201 17 6 4.7035 4.6904 -1.1721 18 6 4.8271 5.4909 -2.2741 19 6 5.3573 6.7269 -1.9909 20 6 5.5838 7.7720 -3.0527 21 6 5.6588 6.9341 -0.7034 22 16 5.2788 5.5648 0.2408 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.9558 0.7807 -0.8908 27 1 3.9564 0.7804 0.8892 28 1 6.0900 1.2187 2.6820 29 1 4.5368 5.1826 -3.2676 30 1 4.6928 8.3927 -3.1475 31 1 6.4330 8.3957 -2.7734 32 1 5.7895 7.2837 -4.0052 33 1 6.0822 7.8480 -0.3134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449956068.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:55 Heat of formation + Delta-G solvation = -102.963551 kcal Electronic energy + Delta-G solvation = -20269.073834 eV Core-core repulsion = 17000.309809 eV Total energy + Delta-G solvation = -3268.764024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60507 -40.37992 -38.75727 -37.47321 -36.72628 -33.71601 -32.02963 -30.34423 -28.51780 -27.88860 -27.02721 -24.70067 -22.29293 -21.35532 -19.90920 -19.56256 -18.76360 -18.39457 -17.44876 -17.24590 -16.89439 -16.64222 -16.11685 -15.60778 -15.25007 -14.62807 -14.46435 -14.34133 -14.20638 -13.83604 -13.46895 -13.28449 -13.08376 -12.94605 -12.84847 -12.72545 -12.64858 -12.55667 -12.03517 -11.80192 -11.70351 -11.47704 -10.95709 -10.74912 -9.79901 -9.42346 -9.02034 -8.49810 -6.37047 -0.16251 0.95650 1.22891 1.36339 1.45403 1.52172 1.55281 1.57682 1.77130 2.21676 2.45677 2.80355 3.00656 4.01564 4.14293 4.25453 4.27965 4.30447 4.36609 4.54980 4.60073 4.63185 4.77718 4.81785 4.91715 5.12785 5.19947 5.29680 5.31573 5.62172 5.70758 5.74154 6.18275 6.79088 6.88828 7.25344 7.71756 8.53820 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.007738 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.067238 B = 3617.404709 C = 5004.977249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.450 3.550 4 O -0.534 6.534 5 C 0.124 3.876 6 N -0.428 5.428 7 C -0.358 4.358 8 H 0.100 0.900 9 C 0.031 3.969 10 N -0.872 5.872 11 Si 0.965 3.035 12 H -0.272 1.272 13 H -0.266 1.266 14 H -0.244 1.244 15 C 0.537 3.463 16 O -0.626 6.626 17 C -0.270 4.270 18 C -0.092 4.092 19 C -0.134 4.134 20 C -0.085 4.085 21 C -0.300 4.300 22 S 0.294 5.706 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.140 0.860 26 H 0.098 0.902 27 H 0.145 0.855 28 H 0.287 0.713 29 H 0.133 0.867 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 4.476 0.984 4.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.293 3.707 4 O -0.423 6.423 5 C -0.002 4.002 6 N -0.146 5.146 7 C -0.490 4.490 8 H 0.117 0.883 9 C -0.177 4.177 10 N -0.506 5.506 11 Si 0.786 3.214 12 H -0.197 1.197 13 H -0.190 1.190 14 H -0.167 1.167 15 C 0.329 3.671 16 O -0.515 6.515 17 C -0.391 4.391 18 C -0.127 4.127 19 C -0.146 4.146 20 C -0.144 4.144 21 C -0.437 4.437 22 S 0.568 5.432 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.158 0.842 26 H 0.116 0.884 27 H 0.162 0.838 28 H 0.098 0.902 29 H 0.151 0.849 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.834 4.010 2.170 4.635 hybrid contribution -0.487 0.257 -0.986 1.129 sum -1.320 4.267 1.184 4.621 Atomic orbital electron populations 1.23527 0.75179 1.05736 1.02058 1.86506 1.24948 1.32675 1.84133 1.25027 0.93330 0.81370 0.70935 1.90558 1.67564 1.37573 1.46568 1.21050 0.85275 0.87061 1.06794 1.42987 1.56976 1.09358 1.05236 1.19641 1.37039 1.01625 0.90647 0.88301 1.26291 0.92421 0.95787 1.03251 1.69732 1.25077 1.19421 1.36357 0.85327 0.78613 0.80638 0.76870 1.19721 1.18983 1.16732 1.17804 0.79825 0.85970 0.83533 1.90605 1.58521 1.69590 1.32788 1.24483 1.15153 0.99306 1.00131 1.20644 1.00276 0.93527 0.98206 1.18838 1.03782 0.95880 0.96076 1.20503 1.02586 0.95778 0.95547 1.26509 1.09004 1.08165 1.00018 1.84096 1.52645 1.00306 1.06159 0.92260 0.92714 0.84231 0.88420 0.83834 0.90240 0.84903 0.90781 0.90130 0.91530 0.79801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 2.00 16 2 O -0.37 -14.10 10.56 -51.31 -0.54 -14.64 16 3 C 0.45 21.03 8.02 71.24 0.57 21.60 16 4 O -0.53 -27.72 16.18 21.97 0.36 -27.37 16 5 C 0.12 6.01 5.53 85.64 0.47 6.48 16 6 N -0.43 -22.35 1.96 -644.36 -1.26 -23.61 16 7 C -0.36 -17.68 6.66 84.09 0.56 -17.12 16 8 H 0.10 4.85 5.78 -11.98 -0.07 4.78 16 9 C 0.03 1.42 5.13 84.94 0.44 1.86 16 10 N -0.87 -41.72 11.38 21.67 0.25 -41.47 16 11 Si 0.96 35.93 29.57 68.60 2.03 37.96 16 12 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 13 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 14 H -0.24 -8.54 7.11 99.48 0.71 -7.83 16 15 C 0.54 28.91 7.58 86.38 0.65 29.56 16 16 O -0.63 -36.24 16.49 -4.48 -0.07 -36.31 16 17 C -0.27 -12.66 6.28 24.07 0.15 -12.51 16 18 C -0.09 -3.77 9.80 21.74 0.21 -3.55 16 19 C -0.13 -4.45 5.78 -21.05 -0.12 -4.57 16 20 C -0.09 -2.05 10.13 71.23 0.72 -1.33 16 21 C -0.30 -9.59 10.67 66.82 0.71 -8.88 16 22 S 0.29 11.48 18.54 -56.49 -1.05 10.44 16 23 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 24 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 25 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.10 4.72 7.50 -2.39 -0.02 4.70 16 27 H 0.14 6.93 5.68 -2.39 -0.01 6.92 16 28 H 0.29 12.68 8.32 -92.71 -0.77 11.91 16 29 H 0.13 5.43 8.06 -2.91 -0.02 5.40 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.58 8.12 -2.38 -0.02 1.56 16 32 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.18 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -65.16 304.34 6.36 -58.80 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 1.09 Total: 22.68 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 5.57 Total: 13.53 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -1.02 Total: -65.08 kcal Atomic # 8 Polarization: -78.06 SS G_CDS: -0.26 Total: -78.32 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Atomic # 16 Polarization: 11.48 SS G_CDS: -1.05 Total: 10.44 kcal Total: -65.16 6.36 -58.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449956068.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.166 kcal (2) G-P(sol) polarization free energy of solvation -65.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds