Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99538 * 2 1 4 4 O 1.20826 * 120.00347 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99569 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46971 * 180.02562 * 5 3 2 7 7 C 1.36968 * 120.00697 * 81.85412 * 6 5 3 8 8 H 1.08004 * 119.99915 * 322.88344 * 7 6 5 9 9 C 1.38966 * 120.00542 * 143.15994 * 7 6 5 10 10 N 1.31424 * 119.99791 * 337.11200 * 9 7 6 11 11 Si 1.86799 * 120.00672 * 157.11566 * 9 7 6 12 12 H 1.48504 * 109.46664 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47381 * 119.99491 * 11 9 7 14 14 H 1.48495 * 109.47263 * 240.00265 * 11 9 7 15 15 C 1.34783 * 119.99464 * 261.85601 * 6 5 3 16 16 O 1.21667 * 119.99903 * 175.77421 * 15 6 5 17 17 C 1.47109 * 119.99974 * 355.76693 * 15 6 5 18 18 C 1.44436 * 123.47058 * 25.12602 * 17 15 6 19 19 C 1.32769 * 113.08836 * 179.76161 * 18 17 15 20 20 S 1.75499 * 110.59112 * 0.48129 * 19 18 17 21 21 C 1.36097 * 123.47149 * 205.40860 * 17 15 6 22 22 C 1.50706 * 124.59347 * 359.97438 * 21 17 15 23 23 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46575 * 299.99610 * 1 2 3 25 25 H 1.09000 * 109.47075 * 59.99750 * 1 2 3 26 26 H 1.08998 * 109.47244 * 59.99914 * 5 3 2 27 27 H 1.09008 * 109.46793 * 299.99672 * 5 3 2 28 28 H 0.96991 * 120.00324 * 185.04349 * 10 9 7 29 29 H 1.08005 * 123.46033 * 359.97125 * 18 17 15 30 30 H 1.08001 * 124.70272 * 180.19265 * 19 18 17 31 31 H 1.08992 * 109.47484 * 89.99370 * 22 21 17 32 32 H 1.08999 * 109.46386 * 209.99564 * 22 21 17 33 33 H 1.08993 * 109.46922 * 329.98714 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.0152 3.3836 1.1747 8 1 3.2589 3.2149 1.9271 9 6 5.0189 4.3189 1.3961 10 7 6.1544 4.2318 0.7401 11 14 4.7544 5.6997 2.6260 12 1 3.4017 5.5754 3.2262 13 1 5.7808 5.6134 3.6955 14 1 4.8697 7.0082 1.9335 15 6 4.3308 3.2798 -1.1551 16 8 4.6015 4.4660 -1.1670 17 6 4.3846 2.5006 -2.4017 18 6 3.6195 1.2954 -2.6214 19 6 3.8213 0.7619 -3.8203 20 16 4.9778 1.7151 -4.7334 21 6 5.1647 2.8379 -3.4647 22 6 6.0705 4.0414 -3.5136 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 3.9557 0.7810 -0.8908 27 1 3.9564 0.7807 0.8893 28 1 6.8816 4.8394 0.9467 29 1 2.9493 0.8733 -1.8871 30 1 3.3436 -0.1368 -4.1817 31 1 7.0574 3.7689 -3.1398 32 1 6.1553 4.3906 -4.5426 33 1 5.6536 4.8352 -2.8938 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449956276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = -43.659737 kcal Electronic energy + Delta-G solvation = -20851.357888 eV Core-core repulsion = 17585.165470 eV Total energy + Delta-G solvation = -3266.192418 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24519 -38.75260 -36.32404 -35.89853 -34.28557 -31.94685 -31.26824 -28.66130 -26.92929 -26.49664 -24.49962 -22.88023 -21.07652 -20.16041 -18.85707 -17.19910 -16.96313 -16.54942 -16.14562 -15.87421 -15.31555 -14.59929 -14.35516 -13.74737 -13.63883 -13.25382 -13.16230 -12.78516 -12.46334 -12.23315 -11.93859 -11.77702 -11.60440 -11.48832 -11.05976 -10.90199 -10.86811 -10.63064 -10.46925 -10.38127 -10.16353 -10.01530 -8.93586 -8.30484 -8.12094 -7.85807 -7.26383 -6.19214 -3.83878 1.36749 1.96306 2.33945 2.60625 2.74770 3.08960 3.31209 3.42769 3.44386 4.24313 4.67531 4.93774 5.15017 5.20332 5.28267 5.33880 5.40228 5.46618 5.68005 5.70842 5.76128 5.89361 5.94892 6.12512 6.22425 6.37487 6.51862 6.74274 6.80759 6.97428 7.59133 8.13955 8.29789 8.93019 9.08329 9.55130 10.18899 10.90290 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.009269 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.883254 B = 3020.040572 C = 4928.456213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.430 3.570 4 O -0.482 6.482 5 C 0.088 3.912 6 N -0.423 5.423 7 C -0.344 4.344 8 H 0.082 0.918 9 C 0.073 3.927 10 N -0.821 5.821 11 Si 0.915 3.085 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.280 1.280 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.140 4.140 18 C -0.129 4.129 19 C -0.237 4.237 20 S 0.126 5.874 21 C -0.154 4.154 22 C -0.091 4.091 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.126 0.874 27 H 0.109 0.891 28 H 0.266 0.734 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 -9.943 -6.967 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.288 6.288 3 C 0.269 3.731 4 O -0.366 6.366 5 C -0.039 4.039 6 N -0.144 5.144 7 C -0.471 4.471 8 H 0.099 0.901 9 C -0.138 4.138 10 N -0.454 5.454 11 Si 0.742 3.258 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.205 1.205 15 C 0.321 3.679 16 O -0.395 6.395 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.371 4.371 20 S 0.391 5.609 21 C -0.273 4.273 22 C -0.149 4.149 23 H 0.113 0.887 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.143 0.857 27 H 0.127 0.873 28 H 0.076 0.924 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.079 -9.010 -8.468 12.742 hybrid contribution -1.066 0.606 2.092 2.425 sum -4.145 -8.404 -6.375 11.334 Atomic orbital electron populations 1.23147 0.77625 1.02885 1.02299 1.86546 1.22594 1.34636 1.84977 1.25312 0.93604 0.81205 0.72939 1.90682 1.66651 1.36181 1.43076 1.21872 0.85693 0.89872 1.06495 1.42879 1.59233 1.05702 1.06605 1.19050 1.11429 1.21427 0.95174 0.90064 1.25107 0.93730 0.98376 0.96635 1.69875 1.01958 1.35109 1.38461 0.86103 0.78221 0.82100 0.79360 1.19548 1.21199 1.20531 1.17005 0.83315 0.86546 0.81008 1.90546 1.50119 1.14975 1.83884 1.20702 1.00152 0.96860 0.97822 1.21862 1.01420 0.95603 0.97033 1.25278 1.06685 1.06276 0.98884 1.82621 1.41483 1.18287 1.18555 1.24260 1.03149 1.02678 0.97256 1.20555 0.97656 0.94947 1.01749 0.88658 0.92245 0.92324 0.85652 0.87314 0.92425 0.83224 0.82054 0.90934 0.92690 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.82 10.57 -39.26 -0.41 -6.23 16 3 C 0.43 8.39 6.14 36.01 0.22 8.61 16 4 O -0.48 -11.22 15.98 -18.75 -0.30 -11.52 16 5 C 0.09 1.76 5.48 -5.19 -0.03 1.74 16 6 N -0.42 -10.90 2.13 -117.42 -0.25 -11.15 16 7 C -0.34 -9.64 9.03 -14.99 -0.14 -9.78 16 8 H 0.08 2.26 7.93 -52.48 -0.42 1.84 16 9 C 0.07 2.05 4.23 -17.46 -0.07 1.98 16 10 N -0.82 -23.77 11.53 55.50 0.64 -23.13 16 11 Si 0.92 22.26 29.61 -169.99 -5.03 17.22 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 C 0.53 14.13 6.71 -12.66 -0.08 14.05 16 16 O -0.52 -15.35 11.88 5.22 0.06 -15.29 16 17 C -0.14 -3.04 5.66 -104.63 -0.59 -3.64 16 18 C -0.13 -2.31 7.98 -39.02 -0.31 -2.62 16 19 C -0.24 -3.49 11.12 28.86 0.32 -3.17 16 20 S 0.13 1.87 22.97 -107.50 -2.47 -0.60 16 21 C -0.15 -2.99 6.34 -35.07 -0.22 -3.22 16 22 C -0.09 -1.72 9.93 36.01 0.36 -1.36 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 25 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.13 2.27 3.94 -51.93 -0.20 2.06 16 27 H 0.11 2.01 8.10 -51.92 -0.42 1.59 16 28 H 0.27 7.32 8.32 -40.82 -0.34 6.98 16 29 H 0.15 2.58 3.67 -52.48 -0.19 2.39 16 30 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.11 2.49 5.75 -51.93 -0.30 2.20 16 LS Contribution 295.60 15.07 4.45 4.45 Total: -1.00 -34.29 295.60 -6.00 -40.28 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -3.20 Total: 1.89 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 0.52 Total: 4.07 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.39 Total: -34.28 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.65 Total: -33.04 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.22 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.47 Total: -0.60 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.29 -6.00 -40.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449956276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.376 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds