Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99538 * 2 1 4 4 O 1.20826 * 120.00347 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99569 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46971 * 180.02562 * 5 3 2 7 7 C 1.36968 * 120.00697 * 81.85412 * 6 5 3 8 8 H 1.08004 * 119.99915 * 322.88344 * 7 6 5 9 9 C 1.38966 * 120.00542 * 143.15994 * 7 6 5 10 10 N 1.31424 * 119.99791 * 337.11200 * 9 7 6 11 11 Si 1.86799 * 120.00672 * 157.11566 * 9 7 6 12 12 H 1.48504 * 109.46664 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47381 * 119.99491 * 11 9 7 14 14 H 1.48495 * 109.47263 * 240.00265 * 11 9 7 15 15 C 1.34783 * 119.99464 * 261.85601 * 6 5 3 16 16 O 1.21667 * 119.99903 * 175.77421 * 15 6 5 17 17 C 1.47109 * 119.99974 * 355.76693 * 15 6 5 18 18 C 1.44436 * 123.47058 * 25.12602 * 17 15 6 19 19 C 1.32769 * 113.08836 * 179.76161 * 18 17 15 20 20 S 1.75499 * 110.59112 * 0.48129 * 19 18 17 21 21 C 1.36097 * 123.47149 * 205.40860 * 17 15 6 22 22 C 1.50706 * 124.59347 * 359.97438 * 21 17 15 23 23 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46575 * 299.99610 * 1 2 3 25 25 H 1.09000 * 109.47075 * 59.99750 * 1 2 3 26 26 H 1.08998 * 109.47244 * 59.99914 * 5 3 2 27 27 H 1.09008 * 109.46793 * 299.99672 * 5 3 2 28 28 H 0.96991 * 120.00324 * 185.04349 * 10 9 7 29 29 H 1.08005 * 123.46033 * 359.97125 * 18 17 15 30 30 H 1.08001 * 124.70272 * 180.19265 * 19 18 17 31 31 H 1.08992 * 109.47484 * 89.99370 * 22 21 17 32 32 H 1.08999 * 109.46386 * 209.99564 * 22 21 17 33 33 H 1.08993 * 109.46922 * 329.98714 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.0152 3.3836 1.1747 8 1 3.2589 3.2149 1.9271 9 6 5.0189 4.3189 1.3961 10 7 6.1544 4.2318 0.7401 11 14 4.7544 5.6997 2.6260 12 1 3.4017 5.5754 3.2262 13 1 5.7808 5.6134 3.6955 14 1 4.8697 7.0082 1.9335 15 6 4.3308 3.2798 -1.1551 16 8 4.6015 4.4660 -1.1670 17 6 4.3846 2.5006 -2.4017 18 6 3.6195 1.2954 -2.6214 19 6 3.8213 0.7619 -3.8203 20 16 4.9778 1.7151 -4.7334 21 6 5.1647 2.8379 -3.4647 22 6 6.0705 4.0414 -3.5136 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 3.9557 0.7810 -0.8908 27 1 3.9564 0.7807 0.8893 28 1 6.8816 4.8394 0.9467 29 1 2.9493 0.8733 -1.8871 30 1 3.3436 -0.1368 -4.1817 31 1 7.0574 3.7689 -3.1398 32 1 6.1553 4.3906 -4.5426 33 1 5.6536 4.8352 -2.8938 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449956276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -66.260138 kcal Electronic energy + Delta-G solvation = -20852.337915 eV Core-core repulsion = 17585.165470 eV Total energy + Delta-G solvation = -3267.172445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80569 -40.41417 -37.86289 -37.45708 -36.16689 -33.96601 -32.73555 -30.18521 -28.58764 -27.82282 -26.26389 -24.48758 -22.58458 -21.69108 -20.61401 -18.70915 -18.70279 -17.97293 -17.62227 -17.39289 -17.08006 -16.22981 -16.14395 -15.42145 -15.29219 -14.69034 -14.61000 -14.29383 -14.03209 -13.79776 -13.47131 -13.36584 -13.18375 -12.92574 -12.86410 -12.71949 -12.53868 -12.38565 -12.11351 -11.77070 -11.74130 -11.63328 -10.94237 -10.09136 -9.64144 -9.29161 -9.19335 -8.29477 -5.97534 -0.02911 0.68156 0.99163 1.11996 1.24145 1.33734 1.43034 1.49699 1.71597 2.28129 2.79079 3.13840 3.24604 3.83839 3.98579 4.05768 4.18052 4.26889 4.35456 4.36676 4.45817 4.55252 4.57978 4.70061 4.72117 5.01076 5.11734 5.32459 5.34721 5.41504 5.45921 6.11087 6.78077 6.90291 7.09581 7.54241 8.23548 8.80651 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.009269 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.883254 B = 3020.040572 C = 4928.456213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.444 3.556 4 O -0.527 6.527 5 C 0.083 3.917 6 N -0.442 5.442 7 C -0.364 4.364 8 H 0.073 0.927 9 C 0.029 3.971 10 N -0.850 5.850 11 Si 0.970 3.030 12 H -0.268 1.268 13 H -0.264 1.264 14 H -0.293 1.293 15 C 0.521 3.479 16 O -0.569 6.569 17 C -0.178 4.178 18 C -0.154 4.154 19 C -0.213 4.213 20 S 0.227 5.773 21 C -0.183 4.183 22 C -0.087 4.087 23 H 0.142 0.858 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.152 0.848 27 H 0.122 0.878 28 H 0.264 0.736 29 H 0.152 0.848 30 H 0.209 0.791 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 -12.746 -8.926 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.286 3.714 4 O -0.415 6.415 5 C -0.043 4.043 6 N -0.162 5.162 7 C -0.491 4.491 8 H 0.090 0.910 9 C -0.179 4.179 10 N -0.485 5.485 11 Si 0.795 3.205 12 H -0.192 1.192 13 H -0.189 1.189 14 H -0.220 1.220 15 C 0.311 3.689 16 O -0.451 6.451 17 C -0.194 4.194 18 C -0.183 4.183 19 C -0.347 4.347 20 S 0.492 5.508 21 C -0.302 4.302 22 C -0.146 4.146 23 H 0.160 0.840 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.169 0.831 27 H 0.139 0.861 28 H 0.073 0.927 29 H 0.169 0.831 30 H 0.226 0.774 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.806 -11.887 -10.412 16.254 hybrid contribution -0.923 1.333 2.513 2.990 sum -4.729 -10.554 -7.899 14.006 Atomic orbital electron populations 1.23560 0.75137 1.05878 1.02103 1.86515 1.24785 1.31989 1.84008 1.24916 0.93192 0.81544 0.71759 1.90670 1.67467 1.37918 1.45487 1.22086 0.86538 0.87241 1.08404 1.43016 1.59512 1.07753 1.05899 1.19163 1.11146 1.22842 0.95969 0.90963 1.25859 0.93578 1.00015 0.98486 1.69949 1.02536 1.35863 1.40135 0.85272 0.78725 0.78637 0.77880 1.19184 1.18909 1.22013 1.17843 0.81823 0.86633 0.82623 1.90495 1.52083 1.17265 1.85223 1.20574 1.03337 0.98946 0.96566 1.21665 1.02537 0.95111 0.98984 1.25866 1.04945 1.06650 0.97286 1.82260 1.39300 1.14783 1.14427 1.24589 1.02688 1.03919 0.99047 1.20432 0.97083 0.94129 1.02913 0.83970 0.92853 0.92285 0.83119 0.86071 0.92685 0.83052 0.77372 0.91366 0.89180 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.78 16 2 O -0.36 -10.48 10.57 -51.43 -0.54 -11.02 16 3 C 0.44 17.21 6.14 71.24 0.44 17.64 16 4 O -0.53 -25.06 15.98 21.96 0.35 -24.71 16 5 C 0.08 3.36 5.48 85.64 0.47 3.83 16 6 N -0.44 -23.60 2.13 -643.62 -1.37 -24.97 16 7 C -0.36 -21.30 9.03 84.07 0.76 -20.54 16 8 H 0.07 4.20 7.93 -2.91 -0.02 4.18 16 9 C 0.03 1.68 4.23 84.93 0.36 2.04 16 10 N -0.85 -51.64 11.53 21.67 0.25 -51.39 16 11 Si 0.97 47.50 29.61 68.60 2.03 49.53 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 15 C 0.52 28.83 6.71 86.57 0.58 29.41 16 16 O -0.57 -35.93 11.88 -4.24 -0.05 -35.98 16 17 C -0.18 -7.78 5.66 -19.87 -0.11 -7.89 16 18 C -0.15 -5.19 7.98 22.67 0.18 -5.01 16 19 C -0.21 -5.26 11.12 66.64 0.74 -4.52 16 20 S 0.23 5.75 22.97 -56.49 -1.30 4.46 16 21 C -0.18 -6.94 6.34 25.19 0.16 -6.78 16 22 C -0.09 -3.36 9.93 71.24 0.71 -2.65 16 23 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.27 8.13 -2.38 -0.02 1.25 16 25 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 26 H 0.15 5.34 3.94 -2.39 -0.01 5.33 16 27 H 0.12 4.50 8.10 -2.38 -0.02 4.48 16 28 H 0.26 15.26 8.32 -92.71 -0.77 14.49 16 29 H 0.15 4.94 3.67 -2.91 -0.01 4.93 16 30 H 0.21 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 3.20 5.75 -2.39 -0.01 3.19 16 Total: -1.00 -80.80 295.60 6.00 -74.80 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.15 Total: 11.98 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.48 Total: 7.31 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -1.12 Total: -76.36 kcal Atomic # 8 Polarization: -71.47 SS G_CDS: -0.24 Total: -71.71 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.30 Total: 4.46 kcal Total: -80.80 6.00 -74.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449956276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.540 kcal (2) G-P(sol) polarization free energy of solvation -80.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds