Wall clock time and date at job start Tue Mar 31 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 120.00510 * 2 1 4 4 H 1.48502 * 109.47282 * 270.00118 * 3 2 1 5 5 H 1.48504 * 109.47132 * 29.99453 * 3 2 1 6 6 H 1.48497 * 109.47390 * 149.99485 * 3 2 1 7 7 C 1.38799 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00462 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99755 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00110 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47427 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99862 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00401 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00413 * 180.02562 * 13 11 10 15 15 C 1.53777 * 113.61922 * 155.00287 * 14 13 11 16 16 C 1.53778 * 87.08479 * 89.11495 * 15 14 13 17 17 C 1.52997 * 113.61679 * 139.98340 * 16 15 14 18 18 F 1.39905 * 109.47157 * 61.52895 * 17 16 15 19 19 F 1.39900 * 109.47010 * 301.53286 * 17 16 15 20 20 F 1.39897 * 109.47422 * 181.52978 * 17 16 15 21 21 C 1.53783 * 87.17189 * 25.39160 * 16 15 14 22 22 H 0.97000 * 119.99613 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47123 * 59.99932 * 10 9 7 24 24 H 1.09000 * 109.47387 * 300.00170 * 10 9 7 25 25 H 0.97006 * 119.99722 * 0.02562 * 13 11 10 26 26 H 1.08998 * 112.90893 * 23.74734 * 14 13 11 27 27 H 1.09006 * 113.61080 * 334.56445 * 15 14 13 28 28 H 1.08997 * 113.61849 * 203.66936 * 15 14 13 29 29 H 1.09007 * 113.61285 * 270.80692 * 16 15 14 30 30 H 1.09000 * 113.61048 * 89.16040 * 21 16 15 31 31 H 1.09003 * 113.61260 * 220.06009 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8438 -6.3432 0.0008 14 6 2.3301 -7.7151 0.0008 15 6 3.3097 -8.7399 -0.5950 16 6 3.8838 -8.8981 0.8228 17 6 4.2273 -10.3438 1.1871 18 9 5.2090 -10.8242 0.3138 19 9 3.0797 -11.1369 1.0803 20 9 4.7072 -10.3924 2.5003 21 6 2.5125 -8.4399 1.3468 22 1 -0.4849 0.8401 -0.0004 23 1 3.1243 -3.7314 0.8905 24 1 3.1243 -3.7315 -0.8894 25 1 3.8007 -6.1836 0.0004 26 1 1.3205 -7.7902 -0.4032 27 1 4.0144 -8.3081 -1.3058 28 1 2.8242 -9.6398 -0.9725 29 1 4.6918 -8.2016 1.0469 30 1 1.8087 -9.2577 1.5013 31 1 2.5746 -7.7663 2.2016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490918892.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:00 Heat of formation + Delta-G solvation = -199.708938 kcal Electronic energy + Delta-G solvation = -19515.595631 eV Core-core repulsion = 15700.779671 eV Total energy + Delta-G solvation = -3814.815960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.05943 -48.57665 -48.54387 -41.21989 -39.27022 -34.58914 -34.46564 -30.93422 -28.62731 -27.63015 -26.89542 -24.11695 -22.21029 -20.74460 -19.88287 -19.37991 -19.31987 -18.69324 -17.65969 -17.18968 -16.86648 -16.40999 -16.11295 -15.60249 -15.47239 -15.12756 -14.99344 -14.76801 -14.73769 -14.65905 -14.59356 -14.15417 -13.94533 -13.53758 -13.31360 -13.15334 -12.88111 -12.61499 -12.26489 -11.84971 -11.73788 -11.55349 -11.13181 -10.97013 -10.25887 -10.13591 -8.65197 -8.33732 -6.11488 1.27832 1.43568 1.48128 1.58185 1.58924 1.81571 2.22001 2.29189 2.77257 2.83883 3.00718 3.02105 3.32690 3.44954 3.63921 3.74871 3.94689 4.02883 4.33373 4.50962 4.53871 4.62251 4.70566 4.82045 4.91486 4.98950 5.43224 5.52547 6.20905 6.49311 7.07959 7.24512 8.75384 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.045806 B = 0.002922 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.132595 B = 9579.074864 C = 9834.121546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.539 3.461 12 O -0.562 6.562 13 N -0.696 5.696 14 C 0.118 3.882 15 C -0.117 4.117 16 C -0.157 4.157 17 C 0.460 3.540 18 F -0.186 7.186 19 F -0.187 7.187 20 F -0.192 7.192 21 C -0.141 4.141 22 H 0.271 0.729 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.419 0.581 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.153 0.847 30 H 0.108 0.892 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.108 -20.004 0.740 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.325 3.675 12 O -0.440 6.440 13 N -0.350 5.350 14 C 0.012 3.988 15 C -0.155 4.155 16 C -0.176 4.176 17 C 0.406 3.594 18 F -0.168 7.168 19 F -0.168 7.168 20 F -0.173 7.173 21 C -0.180 4.180 22 H 0.080 0.920 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.256 0.744 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.171 0.829 30 H 0.126 0.874 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.990 -20.292 0.749 23.089 hybrid contribution 1.876 0.977 0.218 2.127 sum 12.867 -19.314 0.966 23.228 Atomic orbital electron populations 1.70183 1.07979 1.28584 1.48053 1.26118 0.95944 1.03320 0.93777 0.84959 0.78223 0.76070 0.78767 1.19343 1.20466 1.18129 1.23215 0.95384 0.92018 1.58780 0.89809 1.85599 1.10625 0.99283 1.97062 1.23377 1.03547 0.94200 1.07016 1.20057 0.86221 0.86617 0.74637 1.90704 1.17470 1.85992 1.49805 1.45404 1.10212 1.04008 1.75347 1.21781 0.99490 0.80580 0.96978 1.23327 0.98141 0.99788 0.94226 1.24158 1.01805 0.90453 1.01153 1.20626 0.73934 0.90820 0.74039 1.93183 1.63717 1.90316 1.69576 1.93155 1.50649 1.77270 1.95775 1.93177 1.88618 1.97152 1.38380 1.23554 0.94568 1.01154 0.98678 0.92027 0.87035 0.86952 0.74365 0.88858 0.87289 0.86740 0.82930 0.87402 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.38 13.22 21.65 0.29 -55.09 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.84 29.55 68.60 2.03 44.87 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 7 C -0.55 -30.50 9.50 67.95 0.65 -29.86 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 10 C -0.13 -4.80 6.16 71.23 0.44 -4.36 16 11 C 0.54 18.11 7.85 87.66 0.69 18.80 16 12 O -0.56 -24.55 15.46 -3.03 -0.05 -24.60 16 13 N -0.70 -14.52 5.26 -439.77 -2.31 -16.84 16 14 C 0.12 2.13 4.33 45.58 0.20 2.33 16 15 C -0.12 -1.28 7.20 31.12 0.22 -1.06 16 16 C -0.16 -1.77 3.67 -10.27 -0.04 -1.81 16 17 C 0.46 6.70 3.01 71.98 0.22 6.92 16 18 F -0.19 -2.90 17.20 44.97 0.77 -2.12 16 19 F -0.19 -3.08 15.74 44.97 0.71 -2.37 16 20 F -0.19 -3.31 17.32 44.97 0.78 -2.53 16 21 C -0.14 -2.17 7.33 31.18 0.23 -1.94 16 22 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 23 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 24 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 25 H 0.42 5.60 8.70 -92.70 -0.81 4.79 16 26 H 0.09 2.17 7.47 -2.39 -0.02 2.15 16 27 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.11 1.14 7.83 -2.39 -0.02 1.12 16 29 H 0.15 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.11 1.62 7.18 -2.39 -0.02 1.60 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -74.25 298.19 4.49 -69.76 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.37 Total: 8.12 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.07 Total: -9.78 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -2.03 Total: -71.93 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.05 Total: -24.60 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 2.26 Total: -7.03 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -74.25 4.49 -69.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490918892.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.949 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds