Wall clock time and date at job start Tue Mar 31 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47321 * 9.80895 * 3 2 1 5 5 C 1.36907 * 119.99847 * 264.59189 * 4 3 2 6 6 H 1.08007 * 119.99895 * 140.78747 * 5 4 3 7 7 C 1.39015 * 120.00045 * 320.78243 * 5 4 3 8 8 N 1.31386 * 120.00164 * 158.97204 * 7 5 4 9 9 Si 1.86799 * 120.00110 * 338.97660 * 7 5 4 10 10 H 1.48504 * 109.47255 * 92.22489 * 9 7 5 11 11 H 1.48498 * 109.47140 * 212.22554 * 9 7 5 12 12 H 1.48500 * 109.46915 * 332.22637 * 9 7 5 13 13 C 1.34784 * 120.00150 * 84.58840 * 4 3 2 14 14 O 1.21620 * 119.99645 * 184.41090 * 13 4 3 15 15 C 1.47468 * 119.99753 * 4.40863 * 13 4 3 16 16 C 1.39809 * 120.13540 * 54.56050 * 15 13 4 17 17 C 1.37905 * 119.86991 * 180.02562 * 16 15 13 18 18 F 1.35099 * 119.92537 * 180.02562 * 17 16 15 19 19 C 1.38962 * 120.15062 * 359.72497 * 17 16 15 20 20 F 1.35099 * 119.86083 * 180.29563 * 19 17 16 21 21 C 1.38463 * 120.27281 * 0.55303 * 19 17 16 22 22 C 1.38189 * 120.13121 * 359.44907 * 21 19 17 23 23 F 1.35098 * 120.07809 * 180.29755 * 22 21 19 24 24 H 4.40637 * 5.51432 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.47358 * 249.80785 * 3 2 1 26 26 H 1.09007 * 109.46766 * 129.80412 * 3 2 1 27 27 H 0.97001 * 119.99995 * 179.97438 * 8 7 5 28 28 H 1.08006 * 120.07063 * 0.02562 * 16 15 13 29 29 H 1.08007 * 119.93421 * 179.71853 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3601 -0.2353 5 6 3.4688 -2.1603 0.8242 6 1 3.2229 -3.2118 0.8054 7 6 4.1245 -1.6193 1.9242 8 7 4.0843 -2.2379 3.0827 9 14 5.0628 -0.0129 1.7554 10 1 4.1692 1.1211 2.1027 11 1 6.2300 -0.0226 2.6734 12 1 5.5350 0.1397 0.3558 13 6 3.2560 -1.8244 -1.4949 14 8 3.5849 -2.9792 -1.6883 15 6 2.9897 -0.9320 -2.6383 16 6 3.6640 0.2877 -2.7488 17 6 3.4103 1.1181 -3.8201 18 9 4.0617 2.2968 -3.9283 19 6 2.4908 0.7426 -4.7919 20 9 2.2511 1.5580 -5.8421 21 6 1.8152 -0.4614 -4.6856 22 6 2.0605 -1.3024 -3.6169 23 9 1.4052 -2.4795 -3.5173 24 1 -1.0498 -0.0005 0.0001 25 1 3.0092 0.3555 0.9645 26 1 3.0090 0.6587 -0.7896 27 1 4.5422 -1.8607 3.8501 28 1 4.3823 0.5790 -1.9967 29 1 1.0983 -0.7457 -5.4417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490998031.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:40 Heat of formation + Delta-G solvation = -59.657727 kcal Electronic energy + Delta-G solvation = -21945.027745 eV Core-core repulsion = 18000.840911 eV Total energy + Delta-G solvation = -3944.186835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.66339 -48.92559 -48.72529 -39.77272 -37.80968 -35.55078 -32.85616 -31.90404 -31.22152 -30.14373 -26.95305 -25.64998 -23.82398 -22.99675 -20.04766 -18.76407 -18.36340 -17.99807 -17.37272 -16.90950 -16.64825 -16.22852 -15.93125 -15.46642 -15.39538 -15.11731 -14.70362 -14.62922 -14.29532 -14.01411 -13.63312 -13.26777 -12.85005 -12.77508 -12.40386 -12.30298 -11.76655 -11.62341 -11.10025 -10.94595 -10.38575 -9.94650 -9.72684 -9.42638 -9.22357 -8.93119 -8.67451 -8.08257 -6.58526 -4.19397 0.46947 0.65830 2.75859 2.89335 3.01884 3.06110 3.07260 3.25815 3.40990 3.50861 3.88318 3.94886 4.04732 4.24703 4.34394 4.63394 4.72783 4.92570 5.00454 5.31847 5.43969 5.49819 5.63171 5.75250 5.79900 5.85036 6.29284 6.46741 7.29273 7.98577 8.04436 8.22521 8.68337 9.05103 9.42003 10.52398 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.006860 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.640584 B = 4080.731198 C = 4555.770549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C 0.179 3.821 4 N -0.444 5.444 5 C -0.321 4.321 6 H 0.111 0.889 7 C 0.066 3.934 8 N -0.849 5.849 9 Si 0.865 3.135 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.259 1.259 13 C 0.506 3.494 14 O -0.534 6.534 15 C -0.114 4.114 16 C -0.081 4.081 17 C 0.057 3.943 18 F -0.123 7.123 19 C 0.103 3.897 20 F -0.121 7.121 21 C -0.167 4.167 22 C 0.162 3.838 23 F -0.110 7.110 24 H 0.215 0.785 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.278 0.722 28 H 0.163 0.837 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 9.474 -11.365 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.182 4.182 3 C 0.057 3.943 4 N -0.164 5.164 5 C -0.448 4.448 6 H 0.129 0.871 7 C -0.142 4.142 8 N -0.484 5.484 9 Si 0.691 3.309 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.183 1.183 13 C 0.293 3.707 14 O -0.414 6.414 15 C -0.119 4.119 16 C -0.101 4.101 17 C 0.036 3.964 18 F -0.102 7.102 19 C 0.082 3.918 20 F -0.100 7.100 21 C -0.187 4.187 22 C 0.141 3.859 23 F -0.088 7.088 24 H 0.232 0.768 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.180 0.820 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.652 8.859 -11.247 14.775 hybrid contribution 0.197 1.069 -0.046 1.088 sum -3.454 9.927 -11.293 15.428 Atomic orbital electron populations 1.24743 0.95669 1.00259 1.01943 1.23566 0.94722 1.00299 0.99605 1.19225 0.84585 0.87255 1.03206 1.43531 1.55730 1.12186 1.04961 1.19050 1.37531 0.94910 0.93290 0.87137 1.25381 0.95945 0.98216 0.94618 1.69718 1.38946 1.40138 0.99550 0.87160 0.80794 0.83239 0.79745 1.19512 1.20403 1.18288 1.17664 0.83248 0.87685 0.82082 1.90735 1.49583 1.17037 1.83997 1.20455 0.97562 0.95744 0.98143 1.21145 1.00096 0.91758 0.97069 1.17378 0.97107 0.84933 0.96943 1.91549 1.79301 1.43414 1.95917 1.17272 0.98253 0.90173 0.86091 1.91550 1.93184 1.71119 1.54097 1.20836 1.03971 0.93478 1.00404 1.17246 0.92130 0.82630 0.93901 1.91603 1.78279 1.43311 1.95619 0.76822 0.87946 0.89325 0.91113 0.82006 0.82038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.43 19.25 29.55 0.57 -2.86 15 2 C -0.18 -3.45 13.58 -37.12 -0.50 -3.95 15 3 C 0.18 3.56 4.25 -6.83 -0.03 3.53 15 4 N -0.44 -10.45 2.12 -119.14 -0.25 -10.71 15 5 C -0.32 -8.75 9.35 -15.00 -0.14 -8.89 15 6 H 0.11 3.41 7.90 -52.48 -0.41 2.99 15 7 C 0.07 1.74 5.28 -17.45 -0.09 1.65 15 8 N -0.85 -23.42 13.96 55.50 0.77 -22.65 15 9 Si 0.86 18.71 25.16 -169.99 -4.28 14.43 15 10 H -0.27 -5.35 6.56 56.52 0.37 -4.98 15 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 13 C 0.51 11.62 6.75 -12.50 -0.08 11.53 15 14 O -0.53 -14.24 16.75 5.26 0.09 -14.15 15 15 C -0.11 -2.05 4.96 -104.92 -0.52 -2.57 15 16 C -0.08 -1.22 7.58 -39.12 -0.30 -1.52 15 17 C 0.06 0.77 7.29 -39.44 -0.29 0.48 15 18 F -0.12 -1.65 17.17 2.25 0.04 -1.62 15 19 C 0.10 1.30 7.31 -39.23 -0.29 1.01 15 20 F -0.12 -1.49 17.17 2.25 0.04 -1.45 15 21 C -0.17 -2.07 9.99 -39.52 -0.39 -2.47 15 22 C 0.16 2.59 7.27 -38.97 -0.28 2.31 15 23 F -0.11 -1.96 16.66 2.25 0.04 -1.92 15 24 H 0.21 2.58 7.80 -54.10 -0.42 2.16 15 25 H 0.10 2.09 3.60 -51.93 -0.19 1.91 15 26 H 0.09 1.47 4.42 -51.93 -0.23 1.24 15 27 H 0.28 7.04 8.31 -40.82 -0.34 6.71 15 28 H 0.16 2.30 7.25 -52.48 -0.38 1.92 15 29 H 0.16 1.52 8.06 -52.48 -0.42 1.09 15 LS Contribution 279.97 15.07 4.22 4.22 Total: -1.00 -30.18 279.97 -2.90 -33.09 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -1.22 Total: 2.49 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.35 Total: -1.74 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.52 Total: -33.35 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.09 Total: -14.15 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.11 Total: -4.98 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.28 Total: 14.43 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.18 -2.90 -33.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490998031.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.572 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds