Wall clock time and date at job start Tue Mar 31 2020 06:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47445 * 335.06179 * 3 2 1 5 5 C 1.36902 * 120.00098 * 270.00502 * 4 3 2 6 6 H 1.08006 * 120.00196 * 202.72440 * 5 4 3 7 7 C 1.39014 * 120.00268 * 22.72097 * 5 4 3 8 8 N 1.31385 * 120.00191 * 352.41219 * 7 5 4 9 9 Si 1.86799 * 120.00399 * 172.41766 * 7 5 4 10 10 H 1.48502 * 109.47328 * 89.99731 * 9 7 5 11 11 H 1.48501 * 109.47553 * 210.00132 * 9 7 5 12 12 H 1.48509 * 109.47137 * 329.99947 * 9 7 5 13 13 C 1.34780 * 119.99638 * 89.99890 * 4 3 2 14 14 O 1.21620 * 120.00428 * 354.91823 * 13 4 3 15 15 C 1.47448 * 119.99702 * 175.19525 * 13 4 3 16 16 C 1.39987 * 120.18290 * 93.84421 * 15 13 4 17 17 F 1.35104 * 120.07665 * 0.02744 * 16 15 13 18 18 C 1.38151 * 119.84613 * 179.79034 * 16 15 13 19 19 C 1.38353 * 120.21969 * 0.48829 * 18 16 15 20 20 C 1.38466 * 120.36571 * 359.74490 * 19 18 16 21 21 F 1.35096 * 119.92162 * 180.02562 * 20 19 18 22 22 C 1.38422 * 120.14952 * 0.02562 * 20 19 18 23 23 F 1.35099 * 120.10898 * 180.02562 * 22 20 19 24 24 H 4.40638 * 5.51370 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47480 * 215.06568 * 3 2 1 26 26 H 1.08999 * 109.47419 * 95.06418 * 3 2 1 27 27 H 0.97002 * 120.00549 * 185.01345 * 8 7 5 28 28 H 1.08007 * 119.88868 * 180.21133 * 18 16 15 29 29 H 1.07992 * 119.81593 * 179.72387 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2516 0.5824 5 6 3.3631 -1.3368 1.9296 6 1 4.0432 -2.0815 2.3161 7 6 2.7195 -0.4648 2.8001 8 7 2.0107 0.5341 2.3246 9 14 2.8625 -0.7129 4.6460 10 1 4.0371 0.0384 5.1570 11 1 1.6303 -0.2160 5.3093 12 1 3.0339 -2.1586 4.9393 13 6 3.3601 -2.3197 -0.2082 14 8 3.0705 -2.2745 -1.3886 15 6 3.9517 -3.5452 0.3593 16 6 3.1261 -4.5833 0.8070 17 9 1.7830 -4.4656 0.7200 18 6 3.6880 -5.7303 1.3335 19 6 5.0629 -5.8517 1.4288 20 6 5.8878 -4.8285 0.9932 21 9 7.2292 -4.9568 1.0900 22 6 5.3412 -3.6745 0.4588 23 9 6.1469 -2.6769 0.0335 24 1 -1.0497 -0.0003 0.0003 25 1 3.0090 0.8419 0.5904 26 1 3.0093 0.0915 -1.0236 27 1 1.6219 1.1845 2.9302 28 1 3.0517 -6.5330 1.6760 29 1 5.4950 -6.7494 1.8456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491013682.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:43 Heat of formation + Delta-G solvation = -81.909459 kcal Electronic energy + Delta-G solvation = -22241.173499 eV Core-core repulsion = 18296.021757 eV Total energy + Delta-G solvation = -3945.151742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.62988 -50.09173 -49.69335 -40.95722 -39.20093 -37.20977 -33.83337 -33.58233 -32.21675 -31.07822 -28.57240 -26.92576 -24.96610 -23.94561 -21.65716 -20.22803 -19.40073 -19.03054 -18.94723 -18.28589 -17.86641 -17.38102 -17.01526 -16.60182 -16.39302 -16.16717 -16.07705 -15.81466 -15.54215 -15.46827 -14.90295 -14.28722 -14.10298 -14.00726 -13.32543 -13.26313 -13.01392 -12.87246 -12.81520 -12.62299 -12.16229 -11.50132 -11.27638 -10.76670 -10.60802 -10.14910 -10.01662 -9.74390 -8.32801 -6.11212 -0.37950 -0.33694 1.29286 1.41419 1.53050 1.63426 1.86033 2.08853 2.25033 2.37436 2.49467 2.82660 2.95103 3.02803 3.28442 3.49921 3.75688 3.83542 3.96024 4.36016 4.59710 4.67962 4.73492 4.78111 4.89289 5.01035 5.27897 5.35305 5.55699 5.59548 6.23285 6.91462 7.07515 7.25372 7.66359 8.60158 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.007923 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.012196 B = 3532.994126 C = 4013.302151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.138 4.138 3 C 0.239 3.761 4 N -0.424 5.424 5 C -0.362 4.362 6 H 0.101 0.899 7 C 0.005 3.995 8 N -0.875 5.875 9 Si 0.991 3.009 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.257 1.257 13 C 0.480 3.520 14 O -0.625 6.625 15 C -0.146 4.146 16 C 0.130 3.870 17 F -0.135 7.135 18 C -0.110 4.110 19 C -0.064 4.064 20 C 0.058 3.942 21 F -0.124 7.124 22 C 0.094 3.906 23 F -0.133 7.133 24 H 0.237 0.763 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.275 0.725 28 H 0.203 0.797 29 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 -11.466 4.281 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.140 4.140 3 C 0.117 3.883 4 N -0.139 5.139 5 C -0.489 4.489 6 H 0.119 0.881 7 C -0.199 4.199 8 N -0.512 5.512 9 Si 0.813 3.187 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.181 1.181 13 C 0.269 3.731 14 O -0.514 6.514 15 C -0.151 4.151 16 C 0.109 3.891 17 F -0.113 7.113 18 C -0.128 4.128 19 C -0.082 4.082 20 C 0.038 3.962 21 F -0.102 7.102 22 C 0.073 3.927 23 F -0.111 7.111 24 H 0.253 0.747 25 H 0.136 0.864 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.220 0.780 29 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.811 -11.199 3.794 12.423 hybrid contribution -0.114 1.057 0.343 1.118 sum 3.697 -10.141 4.137 11.560 Atomic orbital electron populations 1.25110 0.96310 1.00997 1.05501 1.23335 0.94922 0.99540 0.96206 1.18306 0.85078 0.88537 0.96379 1.43837 1.53745 1.08383 1.07936 1.19838 1.27249 1.21655 0.80156 0.88097 1.26247 0.93587 0.95046 1.05011 1.70060 1.31800 1.12575 1.36728 0.84955 0.78047 0.79574 0.76137 1.19150 1.20479 1.18120 1.18067 0.84885 0.83861 0.86303 1.90635 1.59534 1.83424 1.17815 1.19791 0.92664 0.97255 1.05416 1.17802 0.76823 0.94832 0.99625 1.91522 1.29662 1.96298 1.93820 1.21444 0.95916 0.96217 0.99267 1.21465 0.91345 0.98551 0.96825 1.17592 0.78699 0.94621 1.05308 1.91536 1.28507 1.95888 1.94272 1.17603 0.86475 0.86875 1.01770 1.91500 1.72060 1.59931 1.87635 0.74669 0.86364 0.92518 0.91407 0.78045 0.77029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.99 19.25 74.32 1.43 -10.56 15 2 C -0.14 -7.16 11.36 31.12 0.35 -6.81 15 3 C 0.24 12.53 5.13 84.57 0.43 12.97 15 4 N -0.42 -22.75 2.58 -649.13 -1.67 -24.42 15 5 C -0.36 -18.61 9.14 84.09 0.77 -17.84 15 6 H 0.10 4.95 6.68 -2.91 -0.02 4.93 15 7 C 0.01 0.25 5.40 84.95 0.46 0.71 15 8 N -0.88 -44.75 8.36 21.68 0.18 -44.57 15 9 Si 0.99 38.64 29.56 68.60 2.03 40.67 15 10 H -0.27 -10.01 7.11 99.48 0.71 -9.30 15 11 H -0.28 -10.86 7.11 99.48 0.71 -10.15 15 12 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 13 C 0.48 25.46 6.34 86.67 0.55 26.01 15 14 O -0.62 -36.63 16.74 -4.10 -0.07 -36.70 15 15 C -0.15 -6.31 3.92 -20.02 -0.08 -6.39 15 16 C 0.13 4.62 7.29 22.67 0.17 4.79 15 17 F -0.13 -5.44 16.83 44.97 0.76 -4.69 15 18 C -0.11 -2.41 10.01 22.28 0.22 -2.19 15 19 C -0.06 -1.21 10.01 22.35 0.22 -0.98 15 20 C 0.06 1.64 7.29 22.37 0.16 1.80 15 21 F -0.12 -3.36 17.18 44.97 0.77 -2.59 15 22 C 0.09 3.59 7.10 22.72 0.16 3.75 15 23 F -0.13 -5.66 16.74 44.97 0.75 -4.91 15 24 H 0.24 8.42 7.80 -4.43 -0.03 8.39 15 25 H 0.12 6.24 6.30 -2.39 -0.02 6.22 15 26 H 0.06 2.95 7.50 -2.39 -0.02 2.93 15 27 H 0.28 13.32 8.32 -92.71 -0.77 12.54 15 28 H 0.20 2.51 8.06 -2.91 -0.02 2.48 15 29 H 0.21 1.69 8.06 -2.91 -0.02 1.67 15 Total: -1.00 -69.88 284.27 8.82 -61.07 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.22 Total: 10.87 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.85 Total: 5.27 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -1.49 Total: -68.99 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.07 Total: -36.70 kcal Atomic # 9 Polarization: -14.46 SS G_CDS: 2.28 Total: -12.18 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -69.88 8.82 -61.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491013682.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.842 kcal (2) G-P(sol) polarization free energy of solvation -69.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds