Wall clock time and date at job start Tue Mar 31 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36739 * 119.99827 * 2 1 4 4 H 1.08006 * 119.99707 * 203.36880 * 3 2 1 5 5 C 1.39101 * 120.00054 * 23.36942 * 3 2 1 6 6 N 1.31330 * 120.00301 * 16.53802 * 5 3 2 7 7 Si 1.86803 * 119.99958 * 196.53509 * 5 3 2 8 8 H 1.48502 * 109.47057 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46987 * 119.99851 * 7 5 3 10 10 H 1.48494 * 109.47326 * 240.00225 * 7 5 3 11 11 C 1.34771 * 119.99984 * 180.02562 * 2 1 3 12 12 O 1.21777 * 119.99952 * 180.02562 * 11 2 1 13 13 C 1.46154 * 120.00041 * 359.97438 * 11 2 1 14 14 C 1.35049 * 120.00017 * 180.02562 * 13 11 2 15 15 C 1.47054 * 119.99976 * 180.02562 * 14 13 11 16 16 C 1.39950 * 120.14132 * 180.02562 * 15 14 13 17 17 C 1.37769 * 119.87383 * 179.97438 * 16 15 14 18 18 C 1.38683 * 120.16365 * 359.97438 * 17 16 15 19 19 F 1.35101 * 119.85817 * 179.97438 * 18 17 16 20 20 C 1.38783 * 120.28474 * 0.02562 * 18 17 16 21 21 Cl 1.73594 * 119.93708 * 179.97438 * 20 18 17 22 22 C 1.37906 * 120.12554 * 359.97438 * 20 18 17 23 23 H 1.08997 * 109.47071 * 264.80861 * 1 2 3 24 24 H 1.09005 * 109.47002 * 24.80442 * 1 2 3 25 25 H 1.08994 * 109.47083 * 144.80231 * 1 2 3 26 26 H 0.96995 * 120.00702 * 179.97438 * 6 5 3 27 27 H 1.07999 * 119.99982 * 0.02562 * 13 11 2 28 28 H 1.08008 * 120.00277 * 0.02562 * 14 13 11 29 29 H 1.07997 * 120.06375 * 359.97438 * 16 15 14 30 30 H 1.08000 * 119.92005 * 179.71725 * 17 16 15 31 31 H 1.07990 * 120.08223 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1487 1.1842 0.0000 4 1 3.1623 1.2226 -0.3710 5 6 1.5387 2.3394 0.4778 6 7 0.4565 2.2531 1.2168 7 14 2.2590 4.0137 0.0684 8 1 3.4701 3.8392 -0.7731 9 1 1.2537 4.8173 -0.6724 10 1 2.6255 4.7155 1.3247 11 6 2.1389 -1.1672 -0.0005 12 8 3.3566 -1.1672 -0.0001 13 6 1.4081 -2.4329 -0.0005 14 6 2.0833 -3.6024 -0.0005 15 6 1.3481 -4.8760 -0.0011 16 6 2.0448 -6.0897 -0.0006 17 6 1.3504 -7.2796 -0.0006 18 6 -0.0364 -7.2771 -0.0006 19 9 -0.7111 -8.4475 -0.0011 20 6 -0.7341 -6.0774 -0.0011 21 17 -2.4700 -6.0847 -0.0018 22 6 -0.0510 -4.8794 -0.0011 23 1 -0.3633 -0.0930 1.0234 24 1 -0.3633 0.9329 -0.4311 25 1 -0.3633 -0.8397 -0.5923 26 1 0.0314 3.0586 1.5504 27 1 0.3281 -2.4329 -0.0005 28 1 3.1634 -3.6025 -0.0001 29 1 3.1248 -6.0936 -0.0001 30 1 1.8873 -8.2167 -0.0048 31 1 -0.5946 -3.9463 -0.0019 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491422967.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:45 Heat of formation + Delta-G solvation = -53.056466 kcal Electronic energy + Delta-G solvation = -18658.629395 eV Core-core repulsion = 15266.525493 eV Total energy + Delta-G solvation = -3392.103902 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.03576 -40.60339 -39.99745 -37.66056 -36.76847 -34.78318 -33.68389 -32.06770 -30.42951 -28.28067 -26.76233 -24.97698 -24.05475 -22.26230 -19.87488 -19.10030 -18.89420 -18.31475 -17.44665 -16.89488 -16.82811 -16.51754 -16.01676 -15.78112 -15.38541 -14.90170 -14.76122 -14.33039 -14.21463 -13.78428 -13.45922 -13.42184 -13.16609 -12.96170 -12.83457 -12.64147 -12.42846 -12.15185 -12.11491 -11.99528 -11.11515 -11.01731 -10.45317 -10.05976 -9.74222 -9.20614 -8.43051 -5.99378 -0.62905 -0.00777 0.85014 0.91287 1.40452 1.41631 1.55809 2.25213 2.32807 2.65354 2.97624 3.04295 3.15201 3.53764 3.64595 3.99652 4.01119 4.10411 4.36133 4.45704 4.63053 4.77975 4.82806 4.94825 4.98574 5.05330 5.28266 5.39415 5.44330 5.51282 5.63821 6.07586 6.44852 7.11906 7.40072 8.00625 8.60596 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.003484 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.060803 B = 8034.064258 C = 8849.738200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.446 5.446 3 C -0.347 4.347 4 H 0.074 0.926 5 C 0.001 3.999 6 N -0.886 5.886 7 Si 0.991 3.009 8 H -0.272 1.272 9 H -0.263 1.263 10 H -0.274 1.274 11 C 0.449 3.551 12 O -0.643 6.643 13 C -0.176 4.176 14 C -0.051 4.051 15 C -0.058 4.058 16 C -0.061 4.061 17 C -0.129 4.129 18 C 0.097 3.903 19 F -0.132 7.132 20 C -0.081 4.081 21 Cl -0.053 7.053 22 C -0.080 4.080 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.277 0.723 27 H 0.144 0.856 28 H 0.131 0.869 29 H 0.170 0.830 30 H 0.178 0.822 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 -17.092 -2.470 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.162 5.162 3 C -0.475 4.475 4 H 0.092 0.908 5 C -0.202 4.202 6 N -0.523 5.523 7 Si 0.814 3.186 8 H -0.196 1.196 9 H -0.187 1.187 10 H -0.200 1.200 11 C 0.242 3.758 12 O -0.534 6.534 13 C -0.197 4.197 14 C -0.072 4.072 15 C -0.059 4.059 16 C -0.079 4.079 17 C -0.148 4.148 18 C 0.077 3.923 19 F -0.111 7.111 20 C -0.109 4.109 21 Cl -0.024 7.024 22 C -0.099 4.099 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.161 0.839 28 H 0.148 0.852 29 H 0.187 0.813 30 H 0.196 0.804 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.649 -16.934 -2.372 17.720 hybrid contribution -0.213 0.945 0.069 0.971 sum -4.862 -15.989 -2.303 16.870 Atomic orbital electron populations 1.21549 0.79257 1.01242 1.00854 1.43782 1.06940 1.04905 1.60549 1.19705 1.00187 0.85837 1.41786 0.90780 1.26160 0.96881 1.03154 0.94030 1.70035 1.20922 1.31170 1.30161 0.84923 0.78538 0.76794 0.78374 1.19640 1.18733 1.19990 1.18770 0.87472 0.85345 0.84194 1.90590 1.15604 1.88169 1.59058 1.23121 1.00773 0.91688 1.04069 1.22122 0.99910 0.89917 0.95278 1.19009 0.92028 0.93509 1.01356 1.21642 1.02159 0.89433 0.94703 1.21354 0.90346 1.01345 1.01728 1.17803 0.90845 0.79794 1.03830 1.91524 1.80468 1.45363 1.93708 1.20927 0.85973 0.94141 1.09853 1.98388 1.08163 1.98889 1.97005 1.21328 0.93722 0.97066 0.97740 0.93497 0.92109 0.91059 0.91269 0.83864 0.85168 0.81254 0.80430 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.94 8.30 127.77 1.06 6.00 16 2 N -0.45 -23.26 3.00 -664.05 -1.99 -25.25 16 3 C -0.35 -19.79 9.23 84.14 0.78 -19.01 16 4 H 0.07 4.52 7.44 -2.91 -0.02 4.50 16 5 C 0.00 0.06 4.95 84.98 0.42 0.48 16 6 N -0.89 -46.29 11.00 21.69 0.24 -46.05 16 7 Si 0.99 41.59 29.59 68.60 2.03 43.62 16 8 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 9 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 C 0.45 22.45 7.55 86.30 0.65 23.10 16 12 O -0.64 -37.03 15.93 -4.60 -0.07 -37.10 16 13 C -0.18 -6.41 8.60 23.59 0.20 -6.21 16 14 C -0.05 -1.56 9.46 23.85 0.23 -1.34 16 15 C -0.06 -1.36 5.87 -20.15 -0.12 -1.48 16 16 C -0.06 -1.06 9.79 22.57 0.22 -0.84 16 17 C -0.13 -2.01 10.00 22.26 0.22 -1.79 16 18 C 0.10 1.96 7.28 22.51 0.16 2.13 16 19 F -0.13 -2.79 16.82 44.97 0.76 -2.03 16 20 C -0.08 -1.80 6.32 22.32 0.14 -1.66 16 21 Cl -0.05 -1.17 28.60 -2.72 -0.08 -1.25 16 22 C -0.08 -1.83 9.19 22.60 0.21 -1.63 16 23 H 0.05 2.07 7.89 -2.39 -0.02 2.05 16 24 H 0.06 2.78 6.77 -2.38 -0.02 2.76 16 25 H 0.07 2.44 6.40 -2.39 -0.02 2.43 16 26 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 27 H 0.14 4.36 4.33 -2.91 -0.01 4.35 16 28 H 0.13 4.18 7.52 -2.91 -0.02 4.15 16 29 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.15 3.30 6.16 -2.92 -0.02 3.28 16 Total: -1.00 -67.68 293.74 6.24 -61.45 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.18 Total: 8.85 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 4.18 Total: -2.23 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.75 Total: -71.31 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.07 Total: -37.10 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.76 Total: -2.03 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -67.68 6.24 -61.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491422967.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.389 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds