Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36734 * 119.99984 * 2 1 4 4 H 1.07998 * 120.00401 * 208.77932 * 3 2 1 5 5 C 1.39113 * 119.99895 * 28.77878 * 3 2 1 6 6 N 1.31335 * 120.00077 * 8.43553 * 5 3 2 7 7 Si 1.86794 * 120.00029 * 188.44226 * 5 3 2 8 8 H 1.48496 * 109.47289 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47478 * 119.99669 * 7 5 3 10 10 H 1.48499 * 109.47021 * 239.99766 * 7 5 3 11 11 C 1.34774 * 120.00433 * 179.97438 * 2 1 3 12 12 O 1.21768 * 120.00505 * 180.02562 * 11 2 1 13 13 C 1.46155 * 119.99893 * 0.02562 * 11 2 1 14 14 C 1.35053 * 120.00318 * 172.96171 * 13 11 2 15 15 C 1.47050 * 119.99505 * 347.18990 * 14 13 11 16 16 C 1.39948 * 120.13932 * 133.42240 * 15 14 13 17 17 C 1.37781 * 119.87613 * 179.97438 * 16 15 14 18 18 C 1.38680 * 120.16077 * 359.97438 * 17 16 15 19 19 F 1.35091 * 119.85860 * 180.02562 * 18 17 16 20 20 C 1.38787 * 120.28509 * 359.72571 * 18 17 16 21 21 Cl 1.73599 * 119.93732 * 180.28195 * 20 18 17 22 22 C 1.37907 * 120.12395 * 0.55273 * 20 18 17 23 23 H 1.08996 * 109.47209 * 268.76531 * 1 2 3 24 24 H 1.08993 * 109.47245 * 28.77304 * 1 2 3 25 25 H 1.09012 * 109.46719 * 148.76739 * 1 2 3 26 26 H 0.96997 * 120.00431 * 179.97438 * 6 5 3 27 27 H 1.08006 * 119.99769 * 352.95334 * 13 11 2 28 28 H 1.07992 * 120.00309 * 167.19888 * 14 13 11 29 29 H 1.08000 * 120.06476 * 359.94808 * 16 15 14 30 30 H 1.07997 * 119.91649 * 179.97438 * 17 16 15 31 31 H 1.07996 * 120.08035 * 179.72027 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1841 0.0000 4 1 3.1286 1.2420 -0.4503 5 6 1.5819 2.3145 0.5800 6 7 0.4698 2.2106 1.2709 7 14 2.4026 3.9801 0.3761 8 1 3.6341 3.8285 -0.4397 9 1 1.4686 4.9121 -0.3053 10 1 2.7578 4.5236 1.7116 11 6 2.1389 -1.1671 0.0005 12 8 3.3566 -1.1671 0.0010 13 6 1.4082 -2.4329 0.0005 14 6 2.0759 -3.5981 -0.1423 15 6 3.4810 -3.5919 -0.5761 16 6 4.4272 -4.3742 0.0956 17 6 5.7421 -4.3647 -0.3158 18 6 6.1294 -3.5825 -1.3935 19 9 7.4202 -3.5782 -1.7920 20 6 5.1954 -2.8089 -2.0683 21 17 5.6887 -1.8388 -3.4208 22 6 3.8772 -2.8051 -1.6630 23 1 -0.3633 -0.0221 1.0274 24 1 -0.3633 0.9007 -0.4946 25 1 -0.3633 -0.8788 -0.5329 26 1 0.0748 2.9986 1.6756 27 1 0.3342 -2.4364 0.1149 28 1 1.5780 -4.5344 0.0620 29 1 4.1274 -4.9840 0.9351 30 1 6.4730 -4.9678 0.2023 31 1 3.1519 -2.1994 -2.1858 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491422981.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = -42.545910 kcal Electronic energy + Delta-G solvation = -19543.607117 eV Core-core repulsion = 16151.958987 eV Total energy + Delta-G solvation = -3391.648130 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.96296 -40.77460 -39.55917 -37.57692 -36.65191 -34.41601 -33.62916 -31.88702 -30.31215 -28.23483 -26.63740 -24.70560 -23.86637 -22.51497 -19.77861 -18.96522 -18.70427 -18.23418 -17.48188 -16.96578 -16.73583 -16.34048 -15.81434 -15.73981 -14.97855 -14.84331 -14.71038 -14.40218 -13.96532 -13.85919 -13.58899 -13.23816 -13.06189 -12.88086 -12.72452 -12.51893 -12.37325 -12.24233 -12.14082 -11.90291 -11.02921 -10.66589 -10.29186 -9.82773 -9.50872 -9.02004 -8.36331 -6.00153 -0.29203 0.20278 0.79278 1.05953 1.36621 1.38128 1.50947 2.25316 2.51342 2.65444 3.13604 3.17591 3.23487 3.71129 3.78490 4.14643 4.19914 4.29412 4.55461 4.64850 4.72795 4.89586 4.97696 5.02548 5.10228 5.23840 5.36940 5.40868 5.45181 5.61256 5.82866 6.15347 6.52780 7.19582 7.49834 8.11403 8.65682 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.005558 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.989491 B = 5036.885622 C = 5928.419163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.454 5.454 3 C -0.333 4.333 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.893 5.893 7 Si 0.982 3.018 8 H -0.277 1.277 9 H -0.264 1.264 10 H -0.276 1.276 11 C 0.452 3.548 12 O -0.614 6.614 13 C -0.189 4.189 14 C -0.049 4.049 15 C -0.053 4.053 16 C -0.070 4.070 17 C -0.145 4.145 18 C 0.083 3.917 19 F -0.139 7.139 20 C -0.096 4.096 21 Cl -0.072 7.072 22 C -0.023 4.023 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.274 0.726 27 H 0.155 0.845 28 H 0.187 0.813 29 H 0.176 0.824 30 H 0.173 0.827 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 -13.774 -2.963 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.171 5.171 3 C -0.462 4.462 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.531 5.531 7 Si 0.806 3.194 8 H -0.202 1.202 9 H -0.189 1.189 10 H -0.201 1.201 11 C 0.244 3.756 12 O -0.502 6.502 13 C -0.210 4.210 14 C -0.069 4.069 15 C -0.053 4.053 16 C -0.088 4.088 17 C -0.164 4.164 18 C 0.063 3.937 19 F -0.118 7.118 20 C -0.124 4.124 21 Cl -0.043 7.043 22 C -0.042 4.042 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.173 0.827 28 H 0.204 0.796 29 H 0.193 0.807 30 H 0.190 0.810 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.668 -13.478 -3.003 13.909 hybrid contribution 0.570 1.706 -0.302 1.824 sum 2.238 -11.772 -3.305 12.430 Atomic orbital electron populations 1.21482 0.79669 1.00383 1.00949 1.43773 1.06696 1.04872 1.61791 1.19532 1.02849 0.87236 1.36550 0.91477 1.26097 0.97018 1.02889 0.94301 1.69979 1.19906 1.31385 1.31825 0.85034 0.78360 0.77768 0.78194 1.20152 1.18892 1.20105 1.19082 0.87887 0.85308 0.83291 1.90688 1.14914 1.87537 1.57071 1.23368 1.01127 0.91619 1.04843 1.22560 0.91092 0.98749 0.94502 1.19175 0.95708 0.95929 0.94503 1.21551 0.90957 0.97378 0.98930 1.21260 0.98589 1.00651 0.95869 1.17755 0.77844 1.00611 0.97457 1.91465 1.34547 1.95468 1.90307 1.20916 0.95177 1.00743 0.95561 1.98336 1.91697 1.70509 1.43763 1.20872 0.92963 0.94326 0.96074 0.93532 0.93260 0.90861 0.91646 0.82733 0.79634 0.80693 0.81005 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.02 8.32 127.77 1.06 6.09 16 2 N -0.45 -22.97 2.99 -664.05 -1.99 -24.95 16 3 C -0.33 -18.88 9.14 84.14 0.77 -18.11 16 4 H 0.07 4.12 7.51 -2.91 -0.02 4.09 16 5 C 0.00 -0.03 5.14 84.98 0.44 0.40 16 6 N -0.89 -47.17 10.86 21.69 0.24 -46.93 16 7 Si 0.98 43.11 29.56 68.60 2.03 45.14 16 8 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 9 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 11 C 0.45 21.07 6.70 86.30 0.58 21.65 16 12 O -0.61 -32.41 12.34 -4.57 -0.06 -32.47 16 13 C -0.19 -6.17 9.01 23.59 0.21 -5.96 16 14 C -0.05 -1.27 9.78 23.85 0.23 -1.03 16 15 C -0.05 -1.60 4.35 -20.15 -0.09 -1.69 16 16 C -0.07 -1.73 9.79 22.58 0.22 -1.51 16 17 C -0.15 -3.71 10.01 22.27 0.22 -3.49 16 18 C 0.08 2.69 7.28 22.51 0.16 2.85 16 19 F -0.14 -4.49 16.82 44.97 0.76 -3.73 16 20 C -0.10 -3.48 6.32 22.32 0.14 -3.34 16 21 Cl -0.07 -2.55 28.60 -2.72 -0.08 -2.63 16 22 C -0.02 -0.84 6.60 22.60 0.15 -0.69 16 23 H 0.05 2.05 7.61 -2.39 -0.02 2.03 16 24 H 0.05 2.24 7.19 -2.39 -0.02 2.22 16 25 H 0.07 2.40 6.27 -2.38 -0.01 2.39 16 26 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 27 H 0.16 4.06 6.36 -2.91 -0.02 4.04 16 28 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.11 4.45 7.41 -2.91 -0.02 4.43 16 Total: -1.00 -69.02 289.77 6.17 -62.84 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.17 Total: 7.56 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 4.10 Total: -4.83 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.75 Total: -71.89 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.06 Total: -32.47 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.76 Total: -3.73 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.08 Total: -2.63 kcal Total: -69.02 6.17 -62.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491422981.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.299 kcal (2) G-P(sol) polarization free energy of solvation -69.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds