Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47295 * 281.92234 * 3 2 1 5 5 C 1.36938 * 120.00084 * 263.91856 * 4 3 2 6 6 H 1.08004 * 119.99485 * 199.36013 * 5 4 3 7 7 C 1.38809 * 120.00164 * 19.35921 * 5 4 3 8 8 N 1.31618 * 119.99775 * 22.31681 * 7 5 4 9 9 Si 1.86799 * 120.00155 * 202.31492 * 7 5 4 10 10 H 1.48503 * 109.46877 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47059 * 120.00246 * 9 7 5 12 12 H 1.48499 * 109.46833 * 240.00024 * 9 7 5 13 13 C 1.46503 * 120.00048 * 83.91566 * 4 3 2 14 14 C 1.50702 * 109.46948 * 89.99934 * 13 4 3 15 15 C 1.38217 * 119.98768 * 269.72923 * 14 13 4 16 16 C 1.38362 * 120.01149 * 179.77205 * 15 14 13 17 17 Cl 1.73603 * 120.00817 * 180.27506 * 16 15 14 18 18 C 1.38336 * 119.98879 * 0.52204 * 16 15 14 19 19 C 1.38331 * 119.96916 * 359.73015 * 18 16 15 20 20 Cl 1.73602 * 120.00510 * 179.97438 * 19 18 16 21 21 C 1.38221 * 119.98300 * 90.00372 * 14 13 4 22 22 H 4.40636 * 5.51375 * 179.97438 * 4 1 2 23 23 H 1.09002 * 109.47599 * 41.92455 * 3 2 1 24 24 H 1.09006 * 109.46930 * 161.92713 * 3 2 1 25 25 H 0.97003 * 120.00250 * 180.02562 * 8 7 5 26 26 H 1.08990 * 109.47263 * 210.00391 * 13 4 3 27 27 H 1.09003 * 109.46828 * 330.00492 * 13 4 3 28 28 H 1.08005 * 119.99688 * 359.97438 * 15 14 13 29 29 H 1.07993 * 120.01686 * 179.70425 * 18 16 15 30 30 H 1.08002 * 119.99979 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2845 1.3514 5 6 3.4807 0.7448 2.1857 6 1 4.1189 0.5585 3.0368 7 6 3.0115 2.0274 1.9373 8 7 1.9268 2.2024 1.2126 9 14 3.9194 3.5048 2.6317 10 1 5.0990 3.0418 3.4059 11 1 4.3692 4.3777 1.5178 12 1 3.0113 4.2693 3.5239 13 6 3.2525 -1.6707 1.8104 14 6 4.6250 -2.1955 1.4758 15 6 4.8475 -2.8260 0.2661 16 6 6.1086 -3.3038 -0.0436 17 17 6.3897 -4.0894 -1.5660 18 6 7.1442 -3.1599 0.8622 19 6 6.9195 -2.5334 2.0749 20 17 8.2183 -2.3530 3.2126 21 6 5.6594 -2.0511 2.3811 22 1 -1.0499 0.0002 0.0001 23 1 3.0097 -0.7638 -0.6866 24 1 3.0088 0.9778 -0.3188 25 1 1.5991 3.0987 1.0388 26 1 3.1012 -1.7105 2.8890 27 1 2.4988 -2.2828 1.3150 28 1 4.0378 -2.9429 -0.4389 29 1 8.1275 -3.5369 0.6230 30 1 5.4840 -1.5619 3.3279 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491427375.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = 77.153892 kcal Electronic energy + Delta-G solvation = -17110.501264 eV Core-core repulsion = 14152.380082 eV Total energy + Delta-G solvation = -2958.121182 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.023 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.52952 -38.00279 -37.69894 -37.06700 -33.86257 -33.43125 -31.63406 -31.57179 -28.12033 -27.49773 -24.03241 -23.70394 -22.14131 -19.30859 -18.46999 -17.76328 -17.02616 -16.81899 -16.63980 -15.61010 -15.41554 -15.23398 -15.05358 -14.69648 -14.01788 -13.43790 -13.30186 -13.28858 -12.92039 -12.89277 -12.74024 -12.30272 -12.19969 -12.03335 -12.00226 -11.88531 -11.82991 -10.78795 -10.72202 -10.32789 -9.78654 -9.65985 -8.94372 -7.83085 -5.26320 0.06385 0.14024 0.83834 1.31070 1.45777 1.51163 1.58604 2.28151 2.53759 2.56132 2.62978 3.29187 3.74837 3.90869 4.01949 4.03849 4.13651 4.22632 4.31529 4.66702 4.74736 4.90069 4.99571 5.05758 5.17088 5.29413 5.53745 5.62526 5.66256 5.70962 6.29070 7.09768 7.38184 7.81176 8.23889 9.18085 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.014326 B = 0.006175 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.039627 B = 4533.093536 C = 5919.573483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.134 4.134 3 C 0.272 3.728 4 N -0.589 5.589 5 C -0.264 4.264 6 H 0.077 0.923 7 C -0.040 4.040 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.294 1.294 12 H -0.298 1.298 13 C 0.182 3.818 14 C -0.063 4.063 15 C -0.101 4.101 16 C -0.026 4.026 17 Cl -0.057 7.057 18 C -0.111 4.111 19 C -0.028 4.028 20 Cl -0.061 7.061 21 C -0.096 4.096 22 H 0.221 0.779 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.246 0.754 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.142 0.858 29 H 0.157 0.843 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.702 -12.275 -1.797 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.137 4.137 3 C 0.147 3.853 4 N -0.308 5.308 5 C -0.394 4.394 6 H 0.094 0.906 7 C -0.237 4.237 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.221 1.221 12 H -0.226 1.226 13 C 0.056 3.944 14 C -0.066 4.066 15 C -0.120 4.120 16 C -0.053 4.053 17 Cl -0.028 7.028 18 C -0.131 4.131 19 C -0.055 4.055 20 Cl -0.032 7.032 21 C -0.116 4.116 22 H 0.237 0.763 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.174 0.826 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.793 -12.171 -1.844 15.127 hybrid contribution 0.061 1.265 0.383 1.323 sum 8.854 -10.906 -1.461 14.123 Atomic orbital electron populations 1.24994 0.96368 1.06079 1.03443 1.24593 0.96068 0.95686 0.97358 1.17630 0.82845 0.99008 0.85801 1.44126 1.74567 1.00881 1.11256 1.19426 1.23640 0.87532 1.08800 0.90572 1.25486 0.96800 1.00262 1.01142 1.70281 1.20560 1.20525 1.44072 0.85483 0.78663 0.80611 0.77317 1.19280 1.22142 1.22582 1.19866 0.90481 0.84938 0.99150 1.20783 0.98181 0.94520 0.93143 1.21146 0.96109 0.97790 0.96959 1.20734 0.94708 1.00918 0.88949 1.98366 1.96445 1.78827 1.29156 1.20933 1.00011 1.00576 0.91570 1.20764 0.89736 1.02685 0.92293 1.98362 1.48422 1.96445 1.59974 1.21115 0.90871 0.98639 1.00972 0.76267 0.91779 0.91964 0.94428 0.91910 0.91677 0.83997 0.82581 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.50 19.25 74.32 1.43 -11.07 16 2 C -0.13 -6.25 11.50 31.12 0.36 -5.89 16 3 C 0.27 12.28 5.41 84.57 0.46 12.74 16 4 N -0.59 -26.59 2.47 -716.90 -1.77 -28.37 16 5 C -0.26 -13.37 9.63 84.03 0.81 -12.56 16 6 H 0.08 3.76 7.92 -2.91 -0.02 3.73 16 7 C -0.04 -2.12 4.82 84.86 0.41 -1.71 16 8 N -0.91 -50.88 9.61 21.65 0.21 -50.67 16 9 Si 0.95 43.58 29.61 68.60 2.03 45.61 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 13 C 0.18 6.58 5.80 85.63 0.50 7.07 16 14 C -0.06 -1.98 5.46 -19.87 -0.11 -2.09 16 15 C -0.10 -2.82 9.48 22.29 0.21 -2.61 16 16 C -0.03 -0.67 6.32 22.32 0.14 -0.53 16 17 Cl -0.06 -1.27 28.96 -2.72 -0.08 -1.35 16 18 C -0.11 -2.74 9.62 22.32 0.21 -2.53 16 19 C -0.03 -0.75 6.32 22.32 0.14 -0.61 16 20 Cl -0.06 -1.49 28.96 -2.72 -0.08 -1.57 16 21 C -0.10 -2.93 9.49 22.30 0.21 -2.72 16 22 H 0.22 7.67 7.80 -4.42 -0.03 7.63 16 23 H 0.06 2.47 8.12 -2.39 -0.02 2.45 16 24 H 0.06 3.18 6.59 -2.38 -0.02 3.16 16 25 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 26 H 0.06 2.28 7.98 -2.39 -0.02 2.26 16 27 H 0.06 2.20 8.01 -2.39 -0.02 2.18 16 28 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 29 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -57.18 302.92 6.23 -50.95 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.15 Total: 7.91 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.77 Total: -22.50 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.56 Total: -79.04 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 17 Polarization: -2.76 SS G_CDS: -0.16 Total: -2.92 kcal Total: -57.18 6.23 -50.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491427375.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.104 kcal (2) G-P(sol) polarization free energy of solvation -57.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds