Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 11 11 O 1.42899 * 109.47451 * 59.99396 * 9 7 2 12 12 C 1.52999 * 109.47110 * 180.02562 * 9 7 2 13 13 N 1.46506 * 109.47380 * 179.97438 * 12 9 7 14 14 C 1.33655 * 120.67882 * 90.01666 * 13 12 9 15 15 O 1.21722 * 126.95387 * 0.02562 * 14 13 12 16 16 S 1.77155 * 106.09886 * 179.97438 * 14 13 12 17 17 C 1.76904 * 94.68187 * 0.02562 * 16 14 13 18 18 C 1.38328 * 120.67604 * 269.74161 * 13 12 9 19 19 C 1.40366 * 127.97924 * 0.59975 * 18 13 12 20 20 C 1.37515 * 120.79126 * 179.67999 * 19 18 13 21 21 C 1.38411 * 120.85002 * 359.74378 * 20 19 18 22 22 C 1.38355 * 119.40975 * 0.02562 * 21 20 19 23 23 F 1.35107 * 120.05991 * 179.97438 * 22 21 20 24 24 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 25 25 H 0.96695 * 113.99786 * 60.00449 * 11 9 7 26 26 H 1.09005 * 109.47000 * 299.99228 * 12 9 7 27 27 H 1.08996 * 109.47876 * 59.99314 * 12 9 7 28 28 H 1.08002 * 119.59912 * 359.42915 * 19 18 13 29 29 H 1.08004 * 119.57527 * 179.76894 * 20 19 18 30 30 H 1.07997 * 120.29113 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 0.4298 -2.5751 -1.1664 12 6 2.2453 -3.6620 0.0018 13 7 1.5128 -4.9308 0.0024 14 6 1.1726 -5.5224 -1.1468 15 8 1.4054 -5.1225 -2.2726 16 16 0.3158 -7.0072 -0.7001 17 6 0.4662 -6.7421 1.0425 18 6 1.1641 -5.5438 1.1924 19 6 1.4140 -5.0976 2.4996 20 6 0.9916 -5.8279 3.5856 21 6 0.3052 -7.0179 3.4171 22 6 0.0429 -7.4758 2.1381 23 9 -0.6257 -8.6360 1.9584 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9222 -2.5299 -1.9974 26 1 2.8725 -3.6047 -0.8878 27 1 2.8714 -3.6039 0.8921 28 1 1.9480 -4.1716 2.6543 29 1 1.1977 -5.4680 4.5828 30 1 -0.0221 -7.5844 4.2764 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563128112.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = -93.707777 kcal Electronic energy + Delta-G solvation = -19847.063264 eV Core-core repulsion = 16455.240295 eV Total energy + Delta-G solvation = -3391.822969 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.09738 -40.90224 -38.54903 -36.59593 -35.48951 -32.26278 -31.37016 -30.13921 -28.92017 -25.58610 -24.01525 -22.79982 -22.09128 -20.68848 -19.22747 -17.68596 -17.35776 -16.78006 -16.43408 -16.28999 -15.73588 -15.58762 -15.34447 -14.57446 -14.05380 -13.97355 -13.82874 -13.49054 -13.06099 -12.77494 -12.57775 -12.21915 -11.89049 -11.37816 -11.16914 -10.97727 -10.83765 -10.33562 -10.21945 -10.17789 -9.91135 -9.46658 -8.62343 -8.44089 -8.11938 -7.93155 -6.50826 -4.37820 0.76976 0.82893 0.90930 1.61156 2.26397 2.81957 3.31462 3.34934 3.36649 3.52464 3.94158 4.38315 4.46183 4.59908 4.89293 5.05022 5.17065 5.35866 5.40201 5.66217 5.71047 5.76689 5.89448 6.07871 6.11036 6.28511 6.43349 6.84690 7.18613 7.46827 7.74903 8.15736 8.68204 8.93747 9.49409 10.89219 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.024198 B = 0.005448 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.826249 B = 5138.249164 C = 5874.806455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.038 3.962 3 Si 1.072 2.928 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.654 4.654 8 H 0.054 0.946 9 C 0.204 3.796 10 H 0.054 0.946 11 O -0.576 6.576 12 C 0.075 3.925 13 N -0.523 5.523 14 C 0.533 3.467 15 O -0.450 6.450 16 S -0.020 6.020 17 C -0.198 4.198 18 C 0.179 3.821 19 C -0.129 4.129 20 C -0.053 4.053 21 C -0.167 4.167 22 C 0.170 3.830 23 F -0.129 7.129 24 H 0.285 0.715 25 H 0.360 0.640 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -13.307 7.538 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.899 3.101 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.692 4.692 8 H 0.072 0.928 9 C 0.146 3.854 10 H 0.072 0.928 11 O -0.381 6.381 12 C -0.048 4.048 13 N -0.243 5.243 14 C 0.212 3.788 15 O -0.326 6.326 16 S 0.223 5.777 17 C -0.316 4.316 18 C 0.073 3.927 19 C -0.151 4.151 20 C -0.074 4.074 21 C -0.189 4.189 22 C 0.145 3.855 23 F -0.107 7.107 24 H 0.097 0.903 25 H 0.206 0.794 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.044 -12.447 6.352 14.123 hybrid contribution 1.115 -0.834 0.302 1.424 sum 3.159 -13.280 6.654 15.186 Atomic orbital electron populations 1.70613 1.06975 1.32415 1.41874 1.25825 0.96413 1.02539 0.92391 0.83525 0.74626 0.74943 0.76980 1.21257 1.20830 1.21384 1.22277 0.94451 0.91787 1.60726 0.92776 1.19889 0.88554 0.90587 0.86381 0.92811 1.86473 1.39187 1.96284 1.16173 1.23113 0.96451 0.81084 1.04161 1.46002 1.51535 1.23401 1.03319 1.21668 0.83018 0.87776 0.86292 1.90905 1.56440 1.65891 1.19314 1.85840 1.66552 1.28230 0.97117 1.21546 1.11971 1.01141 0.96965 1.17729 0.96036 0.91125 0.87844 1.20764 1.03987 1.02040 0.88262 1.20707 0.94948 0.92832 0.98932 1.21029 1.04150 0.99004 0.94689 1.16353 0.94911 0.82556 0.91662 1.91528 1.77618 1.45427 1.96172 0.90317 0.79394 0.89071 0.89114 0.83897 0.83682 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.53 55.43 0.75 -25.47 16 2 C 0.04 1.05 5.40 -17.82 -0.10 0.95 16 3 Si 1.07 23.93 29.90 -169.99 -5.08 18.85 16 4 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.65 -17.03 8.76 -34.44 -0.30 -17.33 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.20 4.84 2.70 -27.89 -0.08 4.76 16 10 H 0.05 1.37 8.01 -51.92 -0.42 0.96 16 11 O -0.58 -14.60 11.01 -35.28 -0.39 -14.99 16 12 C 0.08 1.44 4.97 -4.04 -0.02 1.42 16 13 N -0.52 -9.46 2.59 -116.97 -0.30 -9.76 16 14 C 0.53 10.17 7.86 53.56 0.42 10.59 16 15 O -0.45 -9.54 16.86 5.12 0.09 -9.45 16 16 S -0.02 -0.32 23.16 -107.50 -2.49 -2.81 16 17 C -0.20 -3.03 6.57 -39.03 -0.26 -3.29 16 18 C 0.18 2.84 6.58 -83.67 -0.55 2.29 16 19 C -0.13 -1.67 9.47 -39.04 -0.37 -2.04 16 20 C -0.05 -0.53 9.97 -39.78 -0.40 -0.93 16 21 C -0.17 -1.70 10.07 -39.47 -0.40 -2.10 16 22 C 0.17 2.22 7.30 -39.45 -0.29 1.93 16 23 F -0.13 -1.70 17.27 2.25 0.04 -1.66 16 24 H 0.28 8.65 6.47 -40.82 -0.26 8.39 16 25 H 0.36 8.73 8.78 45.56 0.40 9.13 16 26 H 0.09 1.78 7.74 -51.93 -0.40 1.37 16 27 H 0.09 1.53 6.91 -51.93 -0.36 1.17 16 28 H 0.14 1.78 7.07 -52.49 -0.37 1.41 16 29 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 30 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 284.14 15.07 4.28 4.28 Total: -1.00 -30.71 284.14 -6.90 -37.61 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -1.46 Total: 7.14 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.33 Total: -3.74 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.45 Total: -35.23 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.30 Total: -24.44 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.08 Total: 18.85 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.49 Total: -2.81 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.71 -6.90 -37.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563128112.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.099 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds