Wall clock time and date at job start Tue Mar 31 2020 05:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38292 * 119.92583 * 2 1 4 4 C 1.38093 * 120.07616 * 179.72752 * 3 2 1 5 5 C 1.50704 * 120.02163 * 180.27715 * 4 3 2 6 6 C 1.38933 * 119.94738 * 0.52555 * 4 3 2 7 7 N 1.39679 * 120.07063 * 179.74895 * 6 4 3 8 8 C 1.46499 * 120.00084 * 179.72839 * 7 6 4 9 9 C 1.50701 * 109.46992 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47432 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46890 * 120.00210 * 13 11 9 16 16 H 1.48501 * 109.47062 * 240.00257 * 13 11 9 17 17 C 1.38877 * 119.86131 * 359.47733 * 6 4 3 18 18 C 1.38210 * 119.91444 * 0.25093 * 17 6 4 19 19 Br 1.89098 * 119.97146 * 180.02562 * 18 17 6 20 20 H 1.08999 * 109.46691 * 270.01810 * 1 2 3 21 21 H 1.08997 * 109.47383 * 30.01720 * 1 2 3 22 22 H 1.09004 * 109.47028 * 150.02566 * 1 2 3 23 23 H 1.07991 * 119.95927 * 0.02562 * 3 2 1 24 24 H 1.09001 * 109.46683 * 270.24726 * 5 4 3 25 25 H 1.08994 * 109.47255 * 30.25155 * 5 4 3 26 26 H 1.09003 * 109.46496 * 150.25612 * 5 4 3 27 27 H 0.97000 * 119.99495 * 359.72209 * 7 6 4 28 28 H 1.09002 * 109.47391 * 59.99811 * 8 7 6 29 29 H 1.09001 * 109.46813 * 299.99868 * 8 7 6 30 30 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 31 31 H 1.08002 * 120.04114 * 180.22627 * 17 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5779 1.2022 0.0057 5 6 4.3285 2.5090 0.0120 6 6 4.2747 0.0002 0.0004 7 7 5.6715 0.0009 0.0008 8 6 6.4046 -1.2674 0.0012 9 6 7.8861 -0.9913 0.0010 10 1 8.2456 0.0271 0.0010 11 6 8.7826 -2.0388 0.0018 12 7 8.3449 -3.2789 0.0023 13 14 10.6189 -1.6965 0.0023 14 1 10.8490 -0.2294 0.0022 15 1 11.2334 -2.2934 1.2153 16 1 11.2343 -2.2945 -1.2097 17 6 3.5795 -1.2020 0.0003 18 6 2.1974 -1.1990 0.0003 19 35 1.2491 -2.8351 0.0010 20 1 -0.3633 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6552 2.1327 0.0004 24 1 4.5098 2.8287 -1.0142 25 1 3.7376 3.2649 0.5291 26 1 5.2811 2.3783 0.5255 27 1 6.1560 0.8412 0.0007 28 1 6.1419 -1.8393 -0.8888 29 1 6.1413 -1.8390 0.8912 30 1 8.9756 -4.0159 0.0025 31 1 4.1182 -2.1381 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566128431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:51 Heat of formation + Delta-G solvation = 8.880052 kcal Electronic energy + Delta-G solvation = -14323.473430 eV Core-core repulsion = 11843.087916 eV Total energy + Delta-G solvation = -2480.385514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36274 -35.56256 -33.33578 -32.42527 -30.90390 -30.02103 -27.47137 -26.46467 -24.73637 -23.05160 -20.96510 -19.90778 -17.31961 -15.85243 -15.71679 -14.68066 -14.39384 -14.10929 -13.60667 -13.20864 -13.13572 -12.80711 -12.69179 -12.40780 -11.97704 -11.83278 -11.63088 -11.14168 -11.03020 -10.83912 -10.60934 -10.40951 -10.19388 -9.79109 -9.42415 -9.29244 -8.56424 -8.24070 -6.59717 -6.24456 -4.30312 1.57419 1.96915 2.01377 3.19624 3.27238 3.30313 4.09831 4.20665 4.48293 5.05957 5.12876 5.30982 5.31355 5.51362 5.64483 5.80181 5.86784 5.92301 6.05987 6.11273 6.22558 6.34802 6.58108 6.82760 6.85983 6.99446 7.26432 7.36493 7.58234 7.89108 8.17644 8.57898 8.83345 9.36332 10.86108 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.022332 B = 0.005170 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.520905 B = 5414.712426 C = 6642.479889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.143 4.143 3 C -0.066 4.066 4 C -0.168 4.168 5 C -0.102 4.102 6 C 0.236 3.764 7 N -0.723 5.723 8 C 0.248 3.752 9 C -0.540 4.540 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.887 5.887 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.171 4.171 18 C -0.038 4.038 19 Br -0.068 7.068 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.120 0.880 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.393 0.607 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.266 0.734 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.607 5.708 -0.011 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.148 4.148 3 C -0.086 4.086 4 C -0.173 4.173 5 C -0.159 4.159 6 C 0.124 3.876 7 N -0.346 5.346 8 C 0.127 3.873 9 C -0.578 4.578 10 H 0.081 0.919 11 C -0.139 4.139 12 N -0.525 5.525 13 Si 0.731 3.269 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.196 4.196 18 C -0.118 4.118 19 Br 0.017 6.983 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.138 0.862 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.229 0.771 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.725 4.679 -0.010 15.451 hybrid contribution 1.497 0.607 0.011 1.616 sum -13.228 5.285 0.002 14.245 Atomic orbital electron populations 1.20744 0.91336 1.02454 1.01852 1.19269 0.95687 0.91415 1.08437 1.20447 0.92606 0.96468 0.99050 1.19420 0.93753 0.93823 1.10329 1.20561 0.99713 0.93933 1.01718 1.17740 0.85261 0.92351 0.92211 1.45604 1.01147 1.10864 1.77033 1.19172 0.90833 0.80541 0.96771 1.21197 0.90326 0.93346 1.52966 0.91937 1.24930 0.99620 0.94788 0.94584 1.69954 1.35042 0.98369 1.49101 0.86356 0.84262 0.78493 0.77808 1.19639 1.20738 1.20730 1.20607 0.91825 0.98153 1.08982 1.21274 0.93864 0.90014 1.06623 1.96564 1.75432 1.28598 1.97688 0.91885 0.92145 0.91417 0.86181 0.91821 0.91929 0.91964 0.77126 0.95998 0.96021 0.92437 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.55 36.01 0.34 -0.94 16 2 C -0.14 -2.17 5.88 -104.55 -0.62 -2.79 16 3 C -0.07 -0.96 9.35 -39.61 -0.37 -1.33 16 4 C -0.17 -2.70 5.90 -104.42 -0.62 -3.31 16 5 C -0.10 -1.35 9.57 36.01 0.34 -1.00 16 6 C 0.24 4.50 6.63 -83.79 -0.56 3.95 16 7 N -0.72 -15.07 5.62 -59.81 -0.34 -15.40 16 8 C 0.25 6.23 4.67 -5.19 -0.02 6.20 16 9 C -0.54 -14.44 9.28 -34.44 -0.32 -14.76 16 10 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 13 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.17 -3.30 9.05 -39.36 -0.36 -3.66 16 18 C -0.04 -0.65 6.22 -39.55 -0.25 -0.89 16 19 Br -0.07 -1.03 31.77 -68.01 -2.16 -3.19 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 22 H 0.07 0.81 6.63 -51.93 -0.34 0.47 16 23 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 27 H 0.39 7.57 6.32 -40.82 -0.26 7.32 16 28 H 0.02 0.60 7.95 -51.93 -0.41 0.18 16 29 H 0.02 0.59 7.95 -51.93 -0.41 0.18 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.13 2.83 6.73 -52.49 -0.35 2.47 16 LS Contribution 281.64 15.07 4.24 4.24 Total: -1.00 -27.86 281.64 -8.81 -36.67 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.76 Total: 3.56 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.51 Total: -16.88 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.40 Total: -40.05 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 35 Polarization: -1.03 SS G_CDS: -2.16 Total: -3.19 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.86 -8.81 -36.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566128431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.547 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds