Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.98976 * 2 1 4 4 C 1.38198 * 120.00978 * 180.32324 * 3 2 1 5 5 C 1.38347 * 119.98644 * 359.41179 * 4 3 2 6 6 Br 1.89101 * 120.00825 * 180.25798 * 5 4 3 7 7 C 1.38306 * 119.98358 * 0.28635 * 5 4 3 8 8 C 1.50697 * 120.00515 * 180.02562 * 7 5 4 9 9 N 1.46890 * 109.47413 * 284.99471 * 8 7 5 10 10 C 1.46901 * 111.00343 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47123 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00160 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99565 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99695 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00211 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47291 * 89.99999 * 15 13 11 17 17 H 1.48503 * 109.47189 * 209.99977 * 15 13 11 18 18 H 1.48501 * 109.47364 * 329.99971 * 15 13 11 19 19 C 1.38226 * 119.98825 * 179.71521 * 2 1 3 20 20 H 1.08997 * 109.47760 * 270.28298 * 1 2 3 21 21 H 1.09002 * 109.47039 * 30.28410 * 1 2 3 22 22 H 1.09003 * 109.47388 * 150.28087 * 1 2 3 23 23 H 1.08004 * 119.99824 * 0.02562 * 3 2 1 24 24 H 1.08002 * 120.00967 * 179.69758 * 4 3 2 25 25 H 1.08993 * 109.47319 * 45.00342 * 8 7 5 26 26 H 1.09004 * 109.46679 * 164.99903 * 8 7 5 27 27 H 1.00900 * 110.99832 * 56.04841 * 9 8 7 28 28 H 1.08995 * 109.46988 * 300.00123 * 10 9 8 29 29 H 1.09003 * 109.46920 * 60.00119 * 10 9 8 30 30 H 0.96996 * 120.00010 * 179.97438 * 14 13 11 31 31 H 1.07993 * 119.99172 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5800 1.1980 -0.0068 5 6 4.2719 0.0000 -0.0012 6 35 6.1630 0.0000 -0.0031 7 6 3.5803 -1.1977 0.0051 8 6 4.3334 -2.5029 0.0117 9 7 4.8883 -2.7549 -1.3248 10 6 5.6305 -4.0222 -1.3564 11 6 6.1842 -4.2457 -2.7401 12 1 6.0032 -3.5189 -3.5180 13 6 6.9227 -5.3778 -3.0125 14 7 7.4054 -5.5731 -4.2201 15 14 7.2363 -6.6346 -1.6666 16 1 6.1482 -7.6452 -1.6697 17 1 8.5374 -7.3074 -1.9111 18 1 7.2727 -5.9505 -0.3491 19 6 2.1979 -1.1972 0.0060 20 1 -0.3634 0.0051 1.0276 21 1 -0.3633 0.8874 -0.5182 22 1 -0.3634 -0.8925 -0.5095 23 1 1.6579 2.1327 0.0004 24 1 4.1198 2.1334 -0.0117 25 1 5.1445 -2.4507 0.7380 26 1 3.6552 -3.3123 0.2820 27 1 5.4701 -1.9872 -1.6254 28 1 6.4506 -3.9809 -0.6396 29 1 4.9610 -4.8419 -1.0957 30 1 7.9253 -6.3693 -4.4117 31 1 1.6576 -2.1322 0.0110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577099091.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = -0.965912 kcal Electronic energy + Delta-G solvation = -14203.260011 eV Core-core repulsion = 11722.447544 eV Total energy + Delta-G solvation = -2480.812467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58188 -37.29233 -34.89003 -34.04387 -32.54616 -31.36771 -29.43815 -27.22848 -25.93947 -23.25047 -23.11143 -21.34791 -18.99455 -17.46898 -17.04518 -16.57606 -15.98902 -15.78506 -15.41890 -14.71293 -14.58461 -14.36481 -14.06439 -13.57996 -13.38032 -13.30174 -12.91444 -12.72377 -12.49238 -12.11016 -12.01842 -11.84102 -11.63308 -11.45077 -11.12252 -10.81617 -9.89884 -9.45037 -9.18096 -8.30910 -6.35781 0.10559 0.32884 0.68193 1.34197 1.36118 1.47277 2.33375 2.58882 3.02947 3.55242 3.75815 3.86785 3.93737 4.27814 4.33609 4.44562 4.56044 4.72289 4.75733 4.79009 4.89265 5.04615 5.05336 5.20074 5.25870 5.40569 5.49220 5.59116 5.88257 5.93444 6.49520 6.58669 6.72146 7.28767 8.86026 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.005744 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.260154 B = 4873.797037 C = 5737.032594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.112 4.112 6 Br -0.064 7.064 7 C -0.059 4.059 8 C 0.086 3.914 9 N -0.682 5.682 10 C 0.175 3.825 11 C -0.529 4.529 12 H 0.034 0.966 13 C 0.010 3.990 14 N -0.947 5.947 15 Si 0.951 3.049 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.252 1.252 19 C -0.112 4.112 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.162 0.838 24 H 0.147 0.853 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.336 0.664 28 H -0.014 1.014 29 H 0.030 0.970 30 H 0.268 0.732 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 14.943 14.188 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.071 4.071 3 C -0.137 4.137 4 C -0.111 4.111 5 C -0.192 4.192 6 Br 0.021 6.979 7 C -0.062 4.062 8 C -0.043 4.043 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.567 4.567 12 H 0.052 0.948 13 C -0.188 4.188 14 N -0.587 5.587 15 Si 0.774 3.226 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.175 1.175 19 C -0.131 4.131 20 H 0.106 0.894 21 H 0.103 0.897 22 H 0.090 0.910 23 H 0.179 0.821 24 H 0.165 0.835 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.155 0.845 28 H 0.004 0.996 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.299 14.534 13.840 23.032 hybrid contribution 1.118 -0.527 0.397 1.298 sum -10.181 14.007 14.237 22.417 Atomic orbital electron populations 1.20884 0.88368 1.04043 1.03662 1.20418 0.98103 0.92366 0.96214 1.21392 0.92873 0.99131 1.00257 1.21323 0.95227 0.96276 0.98229 1.21887 0.89746 0.96717 1.10815 1.96703 1.04528 1.99055 1.97623 1.19793 0.94840 0.93133 0.98401 1.21036 0.97747 0.94613 0.90926 1.60536 1.41579 1.05459 1.23841 1.19770 0.91520 0.89238 0.94783 1.21282 1.32481 1.06801 0.96124 0.94769 1.25867 0.94734 1.00106 0.98054 1.70053 1.37195 1.29028 1.22424 0.85660 0.78204 0.78937 0.79822 1.18673 1.20514 1.17539 1.21146 0.91960 0.99481 1.00532 0.89410 0.89726 0.91042 0.82065 0.83494 0.94354 0.89512 0.84514 0.99596 0.95222 0.92281 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.07 -1.40 5.88 -19.86 -0.12 -1.52 16 3 C -0.12 -2.18 9.70 22.27 0.22 -1.97 16 4 C -0.09 -2.06 9.79 22.29 0.22 -1.84 16 5 C -0.11 -3.22 6.14 22.31 0.14 -3.08 16 6 Br -0.06 -1.96 30.65 -20.37 -0.62 -2.59 16 7 C -0.06 -1.80 5.43 -19.85 -0.11 -1.91 16 8 C 0.09 3.00 5.19 85.56 0.44 3.44 16 9 N -0.68 -30.05 6.48 -522.02 -3.38 -33.43 16 10 C 0.18 8.76 4.51 85.56 0.39 9.15 16 11 C -0.53 -31.83 9.87 25.60 0.25 -31.57 16 12 H 0.03 2.29 8.06 -2.91 -0.02 2.27 16 13 C 0.01 0.60 5.47 84.65 0.46 1.06 16 14 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 15 Si 0.95 44.84 27.47 68.60 1.88 46.72 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 19 C -0.11 -2.82 9.32 22.27 0.21 -2.61 16 20 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 22 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 23 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 24 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 25 H 0.04 1.35 7.40 -2.39 -0.02 1.33 16 26 H 0.09 2.82 7.95 -2.39 -0.02 2.80 16 27 H 0.34 15.09 6.99 -89.69 -0.63 14.47 16 28 H -0.01 -0.67 7.20 -2.39 -0.02 -0.69 16 29 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 30 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.14 3.15 8.00 -2.91 -0.02 3.12 16 Total: -1.00 -69.12 282.54 1.43 -67.69 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.44 Total: 13.21 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 2.81 Total: -31.57 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -3.08 Total: -93.46 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Atomic # 35 Polarization: -1.96 SS G_CDS: -0.62 Total: -2.59 kcal Total: -69.12 1.43 -67.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577099091.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.724 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds