Wall clock time and date at job start Tue Mar 31 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39902 * 120.17121 * 80.55526 * 3 2 1 5 5 F 1.35103 * 120.10684 * 359.97438 * 4 3 2 6 6 C 1.38231 * 119.77864 * 179.97438 * 4 3 2 7 7 C 1.38272 * 120.12670 * 0.02562 * 6 4 3 8 8 C 1.38403 * 120.34950 * 359.97438 * 7 6 4 9 9 C 1.37920 * 120.21296 * 359.78571 * 8 7 6 10 10 S 1.76197 * 120.06287 * 180.25172 * 9 8 7 11 11 O 1.42104 * 104.27908 * 231.28415 * 10 9 8 12 12 O 1.42097 * 104.28068 * 359.14718 * 10 9 8 13 13 C 1.81406 * 104.44409 * 115.21797 * 10 9 8 14 14 C 1.53007 * 109.46985 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47307 * 179.97438 * 14 13 10 16 16 H 1.08002 * 119.99740 * 359.97438 * 15 14 13 17 17 C 1.37866 * 119.99999 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00106 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 120.00208 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47074 * 89.99897 * 19 17 15 21 21 H 1.48496 * 109.47040 * 210.00095 * 19 17 15 22 22 H 1.48498 * 109.46899 * 329.99983 * 19 17 15 23 23 H 1.08003 * 119.93682 * 179.97438 * 6 4 3 24 24 H 1.08004 * 119.82780 * 179.97438 * 7 6 4 25 25 H 1.07993 * 119.89470 * 180.02562 * 8 7 6 26 26 H 1.08995 * 109.47031 * 299.99729 * 13 10 9 27 27 H 1.08996 * 109.47426 * 60.00376 * 13 10 9 28 28 H 1.09002 * 109.46839 * 300.00064 * 14 13 10 29 29 H 1.09005 * 109.46991 * 59.99393 * 14 13 10 30 30 H 0.97002 * 120.00059 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2712 -0.1975 -1.1931 5 9 2.6014 -0.3909 -2.3504 6 6 4.6535 -0.1948 -1.1838 7 6 5.3392 0.0025 0.0006 8 6 4.6488 0.1991 1.1839 9 6 3.2696 0.2040 1.1902 10 16 2.3948 0.4612 2.6979 11 8 1.4701 -0.6164 2.7547 12 8 3.4159 0.6028 3.6759 13 6 1.5248 2.0342 2.4536 14 6 0.7183 2.3713 3.7093 15 6 -0.0039 3.6784 3.5067 16 1 0.1021 4.2151 2.5755 17 6 -0.7999 4.1888 4.5099 18 7 -1.4298 5.3298 4.3333 19 14 -0.9827 3.2607 6.1208 20 1 0.0696 3.7046 7.0700 21 1 -2.3213 3.5361 6.7016 22 1 -0.8416 1.8037 5.8713 23 1 5.1989 -0.3480 -2.1033 24 1 6.4192 0.0033 0.0023 25 1 5.1918 0.3529 2.1046 26 1 2.2505 2.8251 2.2642 27 1 0.8506 1.9480 1.6015 28 1 -0.0074 1.5802 3.8983 29 1 1.3922 2.4573 4.5618 30 1 -1.9902 5.6888 5.0390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578765668.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:52 Heat of formation + Delta-G solvation = -53.311508 kcal Electronic energy + Delta-G solvation = -19436.447793 eV Core-core repulsion = 16046.376537 eV Total energy + Delta-G solvation = -3390.071255 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.44651 -39.66485 -37.19900 -36.46424 -35.80239 -34.04459 -32.19296 -31.56099 -31.24703 -26.13930 -24.83367 -23.70593 -21.28491 -19.94284 -18.94720 -17.99045 -17.39913 -17.03486 -16.25553 -16.10751 -15.64298 -15.53903 -15.41306 -14.38023 -14.15169 -14.00012 -13.73686 -13.57060 -13.16872 -12.86003 -12.67611 -12.55106 -12.38184 -11.98303 -11.90668 -11.79938 -11.33342 -11.30431 -11.00503 -10.50069 -10.22170 -9.96494 -9.67051 -9.41646 -9.32369 -8.68772 -6.18852 -4.21099 -0.13705 0.19523 0.40767 2.34918 2.45693 2.88670 3.17116 3.24971 3.30102 3.32783 3.36470 3.55645 3.87609 4.12441 4.33098 4.33599 4.52467 4.64839 4.85732 5.11339 5.16751 5.32785 5.34458 5.40448 5.51094 5.62292 6.11893 6.12333 6.70895 6.85214 7.17039 7.48985 8.32563 8.81543 9.39767 10.93363 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.005261 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.272811 B = 5321.380556 C = 5764.440348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C 0.205 3.795 3 C 0.040 3.960 4 C 0.128 3.872 5 F -0.122 7.122 6 C -0.107 4.107 7 C -0.083 4.083 8 C -0.032 4.032 9 C -0.591 4.591 10 S 2.456 3.544 11 O -0.929 6.929 12 O -0.932 6.932 13 C -0.555 4.555 14 C -0.006 4.006 15 C -0.521 4.521 16 H 0.079 0.921 17 C 0.074 3.926 18 N -0.893 5.893 19 Si 0.868 3.132 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.261 1.261 23 H 0.154 0.846 24 H 0.152 0.848 25 H 0.164 0.836 26 H 0.138 0.862 27 H 0.125 0.875 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.387 -10.685 -10.344 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.009 5.009 2 C -0.112 4.112 3 C 0.035 3.965 4 C 0.105 3.895 5 F -0.101 7.101 6 C -0.126 4.126 7 C -0.103 4.103 8 C -0.051 4.051 9 C -0.676 4.676 10 S 2.637 3.363 11 O -0.926 6.926 12 O -0.929 6.929 13 C -0.689 4.689 14 C -0.045 4.045 15 C -0.560 4.560 16 H 0.097 0.903 17 C -0.129 4.129 18 N -0.531 5.531 19 Si 0.694 3.306 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.186 1.186 23 H 0.172 0.828 24 H 0.170 0.830 25 H 0.182 0.818 26 H 0.156 0.844 27 H 0.143 0.857 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.525 -11.174 -9.651 20.712 hybrid contribution 0.242 -0.019 -0.310 0.394 sum 14.767 -11.192 -9.961 21.037 Atomic orbital electron populations 1.81313 1.11005 1.04832 1.03793 1.25309 0.92396 0.96509 0.96952 1.15356 0.84854 1.03436 0.92868 1.17629 0.90340 1.00972 0.80515 1.91581 1.80547 1.92061 1.45881 1.21401 0.91347 0.98988 1.00846 1.21446 1.01346 0.96342 0.91118 1.21152 0.91265 0.92330 1.00310 1.31203 1.06588 1.11645 1.18172 1.07053 0.75761 0.79420 0.74089 1.93603 1.62965 1.51155 1.84852 1.93542 1.56862 1.87540 1.55004 1.30066 1.12090 1.16016 1.10705 1.19483 0.95318 1.00263 0.89463 1.20778 1.28240 1.03454 1.03504 0.90266 1.24954 0.94720 0.94697 0.98521 1.69875 1.30275 1.18875 1.34052 0.86947 0.78261 0.81340 0.84090 1.19507 1.20654 1.18568 0.82801 0.83004 0.81818 0.84429 0.85717 0.94643 0.94831 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.34 -6.17 18.45 41.83 0.77 -5.40 16 2 C 0.21 3.30 11.45 -22.47 -0.26 3.04 16 3 C 0.04 0.51 5.73 -106.82 -0.61 -0.10 16 4 C 0.13 1.31 7.28 -38.96 -0.28 1.03 16 5 F -0.12 -1.35 16.81 2.25 0.04 -1.31 16 6 C -0.11 -0.72 10.01 -39.57 -0.40 -1.11 16 7 C -0.08 -0.51 10.03 -39.51 -0.40 -0.91 16 8 C -0.03 -0.29 9.49 -39.64 -0.38 -0.67 16 9 C -0.59 -7.44 5.61 -39.17 -0.22 -7.66 16 10 S 2.46 40.65 4.62 -107.50 -0.50 40.15 16 11 O -0.93 -18.10 16.72 -57.54 -0.96 -19.06 16 12 O -0.93 -16.12 16.74 -57.54 -0.96 -17.08 16 13 C -0.55 -10.14 5.71 37.16 0.21 -9.92 16 14 C -0.01 -0.14 4.05 -27.88 -0.11 -0.26 16 15 C -0.52 -14.44 9.66 -34.45 -0.33 -14.77 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -26.91 13.96 55.43 0.77 -26.13 16 19 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 23 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 24 H 0.15 0.37 8.06 -52.48 -0.42 -0.06 16 25 H 0.16 1.28 7.20 -52.49 -0.38 0.91 16 26 H 0.14 2.11 8.14 -51.93 -0.42 1.69 16 27 H 0.12 2.26 6.64 -51.93 -0.34 1.91 16 28 H 0.04 0.84 7.20 -51.93 -0.37 0.47 16 29 H 0.03 0.75 7.57 -51.93 -0.39 0.35 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 289.18 15.07 4.36 4.36 Total: -1.00 -34.56 289.18 -6.37 -40.93 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: -2.34 Total: -3.76 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -2.87 Total: -29.30 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 1.55 Total: -31.53 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.92 Total: -36.14 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 40.65 SS G_CDS: -0.50 Total: 40.15 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.56 -6.37 -40.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578765668.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.381 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds