Wall clock time and date at job start Tue Mar 31 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39902 * 120.17121 * 80.55526 * 3 2 1 5 5 F 1.35103 * 120.10684 * 359.97438 * 4 3 2 6 6 C 1.38231 * 119.77864 * 179.97438 * 4 3 2 7 7 C 1.38272 * 120.12670 * 0.02562 * 6 4 3 8 8 C 1.38403 * 120.34950 * 359.97438 * 7 6 4 9 9 C 1.37920 * 120.21296 * 359.78571 * 8 7 6 10 10 S 1.76197 * 120.06287 * 180.25172 * 9 8 7 11 11 O 1.42104 * 104.27908 * 231.28415 * 10 9 8 12 12 O 1.42097 * 104.28068 * 359.14718 * 10 9 8 13 13 C 1.81406 * 104.44409 * 115.21797 * 10 9 8 14 14 C 1.53007 * 109.46985 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47307 * 179.97438 * 14 13 10 16 16 H 1.08002 * 119.99740 * 359.97438 * 15 14 13 17 17 C 1.37866 * 119.99999 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00106 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 120.00208 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47074 * 89.99897 * 19 17 15 21 21 H 1.48496 * 109.47040 * 210.00095 * 19 17 15 22 22 H 1.48498 * 109.46899 * 329.99983 * 19 17 15 23 23 H 1.08003 * 119.93682 * 179.97438 * 6 4 3 24 24 H 1.08004 * 119.82780 * 179.97438 * 7 6 4 25 25 H 1.07993 * 119.89470 * 180.02562 * 8 7 6 26 26 H 1.08995 * 109.47031 * 299.99729 * 13 10 9 27 27 H 1.08996 * 109.47426 * 60.00376 * 13 10 9 28 28 H 1.09002 * 109.46839 * 300.00064 * 14 13 10 29 29 H 1.09005 * 109.46991 * 59.99393 * 14 13 10 30 30 H 0.97002 * 120.00059 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2712 -0.1975 -1.1931 5 9 2.6014 -0.3909 -2.3504 6 6 4.6535 -0.1948 -1.1838 7 6 5.3392 0.0025 0.0006 8 6 4.6488 0.1991 1.1839 9 6 3.2696 0.2040 1.1902 10 16 2.3948 0.4612 2.6979 11 8 1.4701 -0.6164 2.7547 12 8 3.4159 0.6028 3.6759 13 6 1.5248 2.0342 2.4536 14 6 0.7183 2.3713 3.7093 15 6 -0.0039 3.6784 3.5067 16 1 0.1021 4.2151 2.5755 17 6 -0.7999 4.1888 4.5099 18 7 -1.4298 5.3298 4.3333 19 14 -0.9827 3.2607 6.1208 20 1 0.0696 3.7046 7.0700 21 1 -2.3213 3.5361 6.7016 22 1 -0.8416 1.8037 5.8713 23 1 5.1989 -0.3480 -2.1033 24 1 6.4192 0.0033 0.0023 25 1 5.1918 0.3529 2.1046 26 1 2.2505 2.8251 2.2642 27 1 0.8506 1.9480 1.6015 28 1 -0.0074 1.5802 3.8983 29 1 1.3922 2.4573 4.5618 30 1 -1.9902 5.6888 5.0390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578765668.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:51 Heat of formation + Delta-G solvation = -78.836003 kcal Electronic energy + Delta-G solvation = -19437.554618 eV Core-core repulsion = 16046.376537 eV Total energy + Delta-G solvation = -3391.178080 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.25302 -40.46336 -38.50778 -37.73692 -37.19048 -35.97027 -33.56987 -32.97932 -32.02331 -28.02496 -25.67868 -24.57798 -23.07499 -20.96249 -20.13234 -19.38264 -18.71938 -18.19431 -17.27384 -17.07589 -16.91906 -16.79115 -16.41526 -16.17697 -15.53055 -15.13584 -14.89293 -14.83197 -14.61829 -14.23520 -13.87263 -13.58484 -13.47693 -13.34408 -13.27493 -13.11582 -13.09043 -12.97657 -12.30857 -12.12559 -11.92160 -11.73336 -11.32355 -10.86776 -10.62281 -10.11262 -8.39363 -6.46193 -1.21317 -0.86526 -0.32261 1.16312 1.30211 1.32662 1.42679 1.56336 1.66912 2.18242 2.27492 2.32565 2.54957 2.77426 2.94395 3.08998 3.58731 3.68159 3.76670 3.91771 4.04214 4.19172 4.45623 4.48017 4.71057 4.92655 4.95912 4.98884 5.02851 5.41867 5.51721 5.99018 6.12192 6.59284 7.18216 8.76381 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.005261 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.272811 B = 5321.380556 C = 5764.440348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.222 3.778 3 C 0.005 3.995 4 C 0.126 3.874 5 F -0.130 7.130 6 C -0.082 4.082 7 C -0.053 4.053 8 C -0.028 4.028 9 C -0.597 4.597 10 S 2.479 3.521 11 O -0.966 6.966 12 O -0.940 6.940 13 C -0.571 4.571 14 C -0.015 4.015 15 C -0.531 4.531 16 H 0.047 0.953 17 C 0.015 3.985 18 N -0.939 5.939 19 Si 0.925 3.075 20 H -0.250 1.250 21 H -0.275 1.275 22 H -0.253 1.253 23 H 0.200 0.800 24 H 0.208 0.792 25 H 0.181 0.819 26 H 0.161 0.839 27 H 0.117 0.883 28 H 0.026 0.974 29 H 0.047 0.953 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.689 -12.190 -10.973 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.093 4.093 3 C 0.000 4.000 4 C 0.103 3.897 5 F -0.109 7.109 6 C -0.100 4.100 7 C -0.072 4.072 8 C -0.047 4.047 9 C -0.687 4.687 10 S 2.664 3.336 11 O -0.963 6.963 12 O -0.937 6.937 13 C -0.703 4.703 14 C -0.054 4.054 15 C -0.569 4.569 16 H 0.065 0.935 17 C -0.184 4.184 18 N -0.579 5.579 19 Si 0.747 3.253 20 H -0.174 1.174 21 H -0.200 1.200 22 H -0.176 1.176 23 H 0.217 0.783 24 H 0.225 0.775 25 H 0.198 0.802 26 H 0.179 0.821 27 H 0.135 0.865 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.786 -12.650 -10.228 24.851 hybrid contribution -0.871 0.439 -0.319 1.026 sum 17.916 -12.211 -10.547 24.111 Atomic orbital electron populations 1.81293 1.12916 1.07582 1.05751 1.26026 0.93359 0.94706 0.95237 1.15504 0.83046 1.06948 0.94541 1.17934 0.91694 1.00855 0.79188 1.91570 1.81116 1.92112 1.46064 1.21998 0.89337 0.95636 1.03040 1.22071 1.03721 0.92364 0.89019 1.21588 0.89537 0.90971 1.02633 1.30321 1.07723 1.15425 1.15279 1.05752 0.75197 0.77446 0.75242 1.93560 1.64855 1.51612 1.86316 1.93522 1.56342 1.87149 1.56728 1.30092 1.12646 1.19584 1.07931 1.19399 0.95791 0.97635 0.92528 1.21109 1.28542 1.05067 1.02225 0.93478 1.25873 0.94471 0.95566 1.02445 1.70010 1.31576 1.20734 1.35550 0.86028 0.79024 0.80404 0.79861 1.17413 1.20001 1.17635 0.78288 0.77529 0.80161 0.82059 0.86502 0.95539 0.93468 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -15.75 18.45 19.00 0.35 -15.40 16 2 C 0.22 7.44 11.45 88.33 1.01 8.45 16 3 C 0.00 0.12 5.73 -21.29 -0.12 0.00 16 4 C 0.13 2.20 7.28 22.67 0.17 2.37 16 5 F -0.13 -2.62 16.81 44.97 0.76 -1.87 16 6 C -0.08 -0.58 10.01 22.28 0.22 -0.36 16 7 C -0.05 -0.27 10.03 22.32 0.22 -0.05 16 8 C -0.03 -0.39 9.49 22.23 0.21 -0.17 16 9 C -0.60 -13.82 5.61 22.54 0.13 -13.70 16 10 S 2.48 81.30 4.62 -56.49 -0.26 81.04 16 11 O -0.97 -38.55 16.72 -127.65 -2.13 -40.68 16 12 O -0.94 -31.08 16.74 -127.65 -2.14 -33.22 16 13 C -0.57 -21.46 5.71 71.98 0.41 -21.05 16 14 C -0.01 -0.71 4.05 29.85 0.12 -0.59 16 15 C -0.53 -30.67 9.66 25.60 0.25 -30.42 16 16 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 17 C 0.02 0.90 5.47 84.65 0.46 1.36 16 18 N -0.94 -58.61 13.96 21.44 0.30 -58.31 16 19 Si 0.92 44.19 27.47 68.60 1.88 46.08 16 20 H -0.25 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 23 H 0.20 -0.24 8.06 -2.91 -0.02 -0.26 16 24 H 0.21 -0.98 8.06 -2.91 -0.02 -1.01 16 25 H 0.18 1.91 7.20 -2.91 -0.02 1.89 16 26 H 0.16 5.03 8.14 -2.39 -0.02 5.01 16 27 H 0.12 4.53 6.64 -2.39 -0.02 4.51 16 28 H 0.03 1.29 7.20 -2.39 -0.02 1.28 16 29 H 0.05 2.10 7.57 -2.38 -0.02 2.09 16 30 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -81.60 289.18 2.97 -78.63 By element: Atomic # 1 Polarization: -3.22 SS G_CDS: 1.13 Total: -2.09 kcal Atomic # 6 Polarization: -57.26 SS G_CDS: 3.08 Total: -54.18 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: 0.65 Total: -73.71 kcal Atomic # 8 Polarization: -69.63 SS G_CDS: -4.27 Total: -73.90 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.76 Total: -1.87 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 81.30 SS G_CDS: -0.26 Total: 81.04 kcal Total: -81.60 2.97 -78.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578765668.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.204 kcal (2) G-P(sol) polarization free energy of solvation -81.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds