Wall clock time and date at job start Tue Mar 31 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38235 * 120.00205 * 2 1 4 4 C 1.38223 * 120.00676 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.02140 * 359.97438 * 4 3 2 6 6 C 1.38197 * 120.01078 * 359.75091 * 5 4 3 7 7 C 1.50704 * 120.00470 * 180.25367 * 6 5 4 8 8 N 1.46905 * 109.46773 * 260.24911 * 7 6 5 9 9 C 1.46899 * 110.99686 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47227 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99461 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00411 * 180.02562 * 10 9 8 13 13 N 1.31523 * 119.99595 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00427 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46543 * 59.99708 * 14 12 10 16 16 H 1.48493 * 109.47147 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46957 * 300.00141 * 14 12 10 18 18 C 1.38308 * 120.00544 * 180.02562 * 2 1 3 19 19 Br 1.89100 * 120.00943 * 359.95772 * 18 2 1 20 20 H 1.09006 * 109.47074 * 269.97622 * 1 2 3 21 21 H 1.08989 * 109.47087 * 29.98008 * 1 2 3 22 22 H 1.09007 * 109.46754 * 149.98183 * 1 2 3 23 23 H 1.08004 * 120.00031 * 0.03915 * 3 2 1 24 24 H 1.08001 * 119.98533 * 180.02562 * 4 3 2 25 25 H 1.08005 * 119.99349 * 179.97438 * 5 4 3 26 26 H 1.08993 * 109.47301 * 20.25079 * 7 6 5 27 27 H 1.08999 * 109.47007 * 140.25112 * 7 6 5 28 28 H 1.00904 * 110.99844 * 56.04999 * 8 7 6 29 29 H 1.08996 * 109.47658 * 300.00428 * 9 8 7 30 30 H 1.09003 * 109.47182 * 60.00081 * 9 8 7 31 31 H 0.97000 * 119.99322 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2723 0.0002 -0.0005 6 6 3.5821 -1.1970 0.0052 7 6 4.3364 -2.5017 0.0110 8 7 4.3779 -3.0493 -1.3516 9 6 5.1076 -4.3238 -1.3847 10 6 5.1299 -4.8534 -2.7953 11 1 4.6502 -4.2985 -3.5880 12 6 5.7624 -6.0464 -3.0740 13 7 6.3469 -6.7219 -2.1086 14 14 5.7894 -6.7033 -4.8225 15 1 6.4658 -5.7228 -5.7092 16 1 6.5260 -7.9922 -4.8557 17 1 4.3970 -6.9173 -5.2924 18 6 2.1987 -1.1977 -0.0005 19 35 1.2536 -2.8356 -0.0001 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8901 -0.5135 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6583 2.1325 0.0006 24 1 4.1202 2.1327 -0.0001 25 1 5.3524 0.0009 -0.0014 26 1 5.3530 -2.3321 0.3656 27 1 3.8344 -3.2087 0.6715 28 1 4.7808 -2.3854 -1.9959 29 1 6.1296 -4.1665 -1.0399 30 1 4.6114 -5.0436 -0.7337 31 1 6.7916 -7.5613 -2.3047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591762980.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:19 Heat of formation + Delta-G solvation = 17.577839 kcal Electronic energy + Delta-G solvation = -14228.314024 eV Core-core repulsion = 11748.305674 eV Total energy + Delta-G solvation = -2480.008350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.47461 -35.49972 -33.13389 -32.66363 -31.43244 -29.35676 -27.01509 -26.77315 -24.30932 -21.69313 -21.39288 -20.43986 -16.63490 -16.10812 -15.85119 -14.89408 -14.52495 -14.17687 -13.89559 -13.36268 -13.24331 -12.97291 -12.38065 -12.20516 -12.00825 -11.54199 -11.39555 -11.07610 -10.88882 -10.65884 -10.60387 -10.53686 -9.92983 -9.50534 -9.18970 -8.60720 -8.45319 -8.40799 -7.25274 -6.00002 -4.01441 1.23429 1.35233 2.02215 3.35988 3.39577 3.43097 3.67372 4.46285 4.76740 4.80406 4.95042 5.23455 5.35845 5.36970 5.51737 5.56211 5.56433 5.69377 5.84808 5.96382 6.09716 6.27564 6.39978 6.44213 6.60640 6.91083 7.26848 7.44227 7.80885 8.15057 8.41416 8.62403 9.07316 9.63027 11.11116 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.025502 B = 0.005363 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.691176 B = 5220.114726 C = 5779.649561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.126 4.126 4 C -0.106 4.106 5 C -0.119 4.119 6 C -0.040 4.040 7 C 0.087 3.913 8 N -0.674 5.674 9 C 0.197 3.803 10 C -0.511 4.511 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.072 4.072 19 Br -0.034 7.034 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.125 0.875 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.328 0.672 29 H -0.015 1.015 30 H 0.030 0.970 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.188 15.018 6.924 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.124 4.124 5 C -0.139 4.139 6 C -0.042 4.042 7 C -0.042 4.042 8 N -0.304 5.304 9 C 0.070 3.930 10 C -0.550 4.550 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.152 4.152 19 Br 0.052 6.948 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.143 0.857 24 H 0.142 0.858 25 H 0.145 0.855 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.144 0.856 29 H 0.003 0.997 30 H 0.048 0.952 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.058 13.882 7.013 19.083 hybrid contribution 1.325 0.265 -0.805 1.573 sum -9.733 14.147 6.208 18.259 Atomic orbital electron populations 1.20964 0.90653 1.03559 1.02754 1.19785 0.96387 0.91716 0.98761 1.20920 0.94230 0.96878 1.02478 1.21161 0.94240 0.97974 0.99038 1.21083 1.00079 0.91514 1.01204 1.20004 0.92074 0.96211 0.95934 1.21010 0.96813 0.91565 0.94833 1.60709 1.59554 1.06945 1.03216 1.19549 0.90528 0.85204 0.97672 1.21128 1.34093 1.05970 0.93786 0.92018 1.24973 0.95429 0.96762 0.97359 1.69960 1.36429 1.15559 1.31895 0.86553 0.78179 0.77988 0.84628 1.20304 1.21374 1.20165 1.21668 0.94259 0.91646 1.07616 1.96687 1.73835 1.26983 1.97255 0.90805 0.91348 0.90414 0.85741 0.85818 0.85548 0.95201 0.90005 0.85590 0.99691 0.95229 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.55 36.01 0.34 -0.94 16 2 C -0.06 -0.84 5.88 -104.60 -0.62 -1.45 16 3 C -0.13 -1.44 9.70 -39.59 -0.38 -1.82 16 4 C -0.11 -1.21 10.05 -39.58 -0.40 -1.61 16 5 C -0.12 -1.62 9.67 -39.59 -0.38 -2.00 16 6 C -0.04 -0.64 5.39 -104.60 -0.56 -1.20 16 7 C 0.09 1.61 5.14 -4.97 -0.03 1.58 16 8 N -0.67 -14.67 6.48 -116.34 -0.75 -15.42 16 9 C 0.20 5.20 5.44 -4.98 -0.03 5.17 16 10 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 16 11 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 14 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 C -0.07 -1.11 6.22 -39.52 -0.25 -1.36 16 19 Br -0.03 -0.55 30.10 -68.01 -2.05 -2.60 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.07 0.59 8.08 -51.94 -0.42 0.17 16 22 H 0.08 0.88 6.65 -51.93 -0.35 0.53 16 23 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 24 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 25 H 0.13 1.54 8.04 -52.48 -0.42 1.11 16 26 H 0.03 0.53 8.01 -51.93 -0.42 0.12 16 27 H 0.08 1.57 7.15 -51.93 -0.37 1.19 16 28 H 0.33 6.93 8.71 -39.29 -0.34 6.59 16 29 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -30.47 285.84 -9.47 -39.94 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.97 Total: 0.24 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.72 Total: -17.07 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.02 Total: -41.78 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.05 Total: -2.60 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.47 -9.47 -39.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591762980.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.518 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds