Wall clock time and date at job start Tue Mar 31 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.47293 * 2 1 4 4 C 1.36920 * 119.99671 * 86.69753 * 3 2 1 5 5 H 1.08005 * 119.99371 * 174.87035 * 4 3 2 6 6 C 1.38960 * 120.00570 * 354.86439 * 4 3 2 7 7 N 1.31436 * 119.99815 * 347.84008 * 6 4 3 8 8 Si 1.86802 * 120.00321 * 167.84196 * 6 4 3 9 9 H 1.48497 * 109.46874 * 59.99774 * 8 6 4 10 10 H 1.48501 * 109.47075 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47044 * 300.00211 * 8 6 4 12 12 C 1.34777 * 120.00101 * 266.70145 * 3 2 1 13 13 O 1.21816 * 119.99908 * 184.94219 * 12 3 2 14 14 C 1.41585 * 119.99625 * 4.93647 * 12 3 2 15 15 S 1.75659 * 125.10843 * 17.72626 * 14 12 3 16 16 C 1.75556 * 91.21557 * 179.97438 * 15 14 12 17 17 C 1.34252 * 110.69653 * 359.97262 * 16 15 14 18 18 C 1.37287 * 125.10759 * 197.41665 * 14 12 3 19 19 O 1.37659 * 124.48216 * 0.25620 * 18 14 12 20 20 C 1.43378 * 114.50267 * 163.26400 * 19 18 14 21 21 C 1.53230 * 109.12546 * 46.51816 * 20 19 18 22 22 O 1.38237 * 124.13920 * 180.20364 * 17 16 15 23 23 H 1.08998 * 109.46916 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46810 * 300.00080 * 1 2 3 25 25 H 1.08999 * 109.46498 * 60.00069 * 1 2 3 26 26 H 1.08999 * 109.47355 * 119.99605 * 2 1 3 27 27 H 1.08996 * 109.47537 * 239.99885 * 2 1 3 28 28 H 0.96997 * 119.99921 * 179.97438 * 7 6 4 29 29 H 1.08001 * 124.65407 * 180.02562 * 16 15 14 30 30 H 1.08994 * 109.52739 * 166.41438 * 20 19 18 31 31 H 1.09001 * 109.52667 * 286.55869 * 20 19 18 32 32 H 1.08999 * 109.52120 * 57.65004 * 21 20 19 33 33 H 1.09000 * 109.52038 * 177.77515 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1822 2.0494 1.1838 5 1 2.6198 3.0368 1.1905 6 6 1.7854 1.4573 2.3767 7 7 1.0425 0.3732 2.3569 8 14 2.3077 2.2020 4.0083 9 1 1.7897 3.5902 4.1071 10 1 1.7578 1.3884 5.1223 11 1 3.7902 2.2197 4.0924 12 6 2.3064 1.9942 -1.1653 13 8 2.7970 3.1092 -1.1619 14 6 2.0388 1.3421 -2.3932 15 16 0.9603 -0.0298 -2.5944 16 6 1.2889 -0.0829 -4.3181 17 6 2.1534 0.8834 -4.6663 18 6 2.5785 1.6908 -3.6064 19 8 3.4646 2.7270 -3.7963 20 6 4.1781 2.6790 -5.0390 21 6 3.1907 2.3878 -6.1739 22 8 2.6004 1.0962 -5.9570 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.7658 -0.0404 3.1895 29 1 0.8544 -0.7946 -5.0045 30 1 4.6650 3.6378 -5.2168 31 1 4.9298 1.8907 -4.9974 32 1 2.4150 3.1534 -6.1873 33 1 3.7202 2.3890 -7.1267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593969310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:32 Heat of formation + Delta-G solvation = -36.384098 kcal Electronic energy + Delta-G solvation = -20733.937646 eV Core-core repulsion = 17468.060723 eV Total energy + Delta-G solvation = -3265.876923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55436 -38.67846 -36.59223 -35.55204 -34.67227 -31.95879 -29.79633 -29.59030 -28.91504 -25.57118 -23.62052 -23.39083 -22.23994 -20.25647 -18.85938 -18.11444 -16.93274 -16.66959 -16.47467 -15.67710 -15.06036 -14.70441 -14.52648 -14.20603 -13.99173 -13.78512 -13.60973 -13.39324 -12.89620 -12.59981 -12.16799 -11.72376 -11.41298 -11.23903 -10.92858 -10.87797 -10.74881 -10.47015 -10.38991 -10.31021 -10.05889 -9.86269 -8.99623 -8.46693 -7.96859 -7.90994 -7.26735 -6.36742 -3.84396 1.03103 1.97901 2.22996 2.71284 3.16772 3.19654 3.24387 3.60876 3.81342 4.04259 4.27699 4.41676 4.74209 4.96650 4.97953 5.06356 5.11020 5.42007 5.58717 5.73410 5.93352 5.93724 6.12423 6.46240 6.52559 6.56019 6.75057 6.97620 7.25809 7.43904 7.53181 7.71230 7.99457 8.43509 9.09619 9.30653 9.92373 10.52490 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.005906 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.006339 B = 4739.675074 C = 5588.813084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.098 3.902 3 N -0.431 5.431 4 C -0.280 4.280 5 H 0.109 0.891 6 C 0.021 3.979 7 N -0.869 5.869 8 Si 0.935 3.065 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.497 3.503 13 O -0.576 6.576 14 C -0.224 4.224 15 S 0.246 5.754 16 C -0.287 4.287 17 C 0.037 3.963 18 C 0.075 3.925 19 O -0.262 6.262 20 C 0.014 3.986 21 C 0.020 3.980 22 O -0.302 6.302 23 H 0.046 0.954 24 H 0.101 0.899 25 H 0.029 0.971 26 H 0.124 0.876 27 H 0.045 0.955 28 H 0.270 0.730 29 H 0.164 0.836 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 -3.363 -10.858 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 N -0.149 5.149 4 C -0.409 4.409 5 H 0.126 0.874 6 C -0.180 4.180 7 N -0.510 5.510 8 Si 0.761 3.239 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.287 3.713 13 O -0.462 6.462 14 C -0.344 4.344 15 S 0.512 5.488 16 C -0.423 4.423 17 C -0.019 4.019 18 C 0.015 3.985 19 O -0.175 6.175 20 C -0.063 4.063 21 C -0.056 4.056 22 O -0.218 6.218 23 H 0.065 0.935 24 H 0.119 0.881 25 H 0.048 0.952 26 H 0.142 0.858 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.181 0.819 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.435 -3.765 -9.782 10.491 hybrid contribution 1.112 1.039 -0.524 1.610 sum 0.677 -2.726 -10.306 10.682 Atomic orbital electron populations 1.22323 0.96087 1.00610 1.01756 1.22150 0.95306 0.83719 1.01540 1.43871 1.54369 1.11500 1.05135 1.19885 1.36711 1.01906 0.82373 0.87362 1.25345 0.95939 0.96789 0.99974 1.70079 1.32821 1.20442 1.27688 0.85838 0.79178 0.78889 0.79951 1.19759 1.20776 1.19821 1.15335 0.87068 0.86918 0.81929 1.90707 1.49496 1.19776 1.86236 1.22978 1.09509 1.04922 0.97018 1.85266 1.42648 1.26618 0.94313 1.25703 1.05570 1.05771 1.05296 1.18226 1.00352 0.99332 0.83955 1.18676 0.95939 0.92326 0.91545 1.87195 1.52153 1.41681 1.36507 1.23568 0.94288 1.04465 0.83987 1.23555 0.97078 0.85214 0.99794 1.87036 1.76167 1.33961 1.24646 0.93539 0.88065 0.95214 0.85843 0.93808 0.91948 0.81879 0.86507 0.91078 0.90810 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.40 37.16 0.31 -2.72 16 2 C 0.10 2.18 4.85 -4.04 -0.02 2.16 16 3 N -0.43 -11.22 2.62 -118.05 -0.31 -11.53 16 4 C -0.28 -7.64 9.53 -15.01 -0.14 -7.79 16 5 H 0.11 3.12 7.19 -52.48 -0.38 2.74 16 6 C 0.02 0.53 5.26 -17.45 -0.09 0.44 16 7 N -0.87 -20.97 7.47 55.50 0.41 -20.56 16 8 Si 0.94 19.94 29.57 -169.99 -5.03 14.91 16 9 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 C 0.50 13.23 7.39 -14.98 -0.11 13.12 16 13 O -0.58 -17.25 15.61 -9.96 -0.16 -17.40 16 14 C -0.22 -5.04 5.84 -38.65 -0.23 -5.26 16 15 S 0.25 4.34 15.59 -107.50 -1.68 2.66 16 16 C -0.29 -4.69 11.17 29.33 0.33 -4.36 16 17 C 0.04 0.68 6.54 -40.38 -0.26 0.41 16 18 C 0.07 1.58 6.56 -39.32 -0.26 1.32 16 19 O -0.26 -5.45 9.76 -48.04 -0.47 -5.92 16 20 C 0.01 0.19 7.13 37.28 0.27 0.46 16 21 C 0.02 0.25 7.15 37.28 0.27 0.52 16 22 O -0.30 -4.82 10.78 -35.40 -0.38 -5.20 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.10 2.34 6.09 -51.93 -0.32 2.03 16 25 H 0.03 0.58 5.82 -38.57 -0.22 0.36 16 26 H 0.12 2.92 5.82 -51.93 -0.30 2.62 16 27 H 0.04 0.90 4.65 -24.71 -0.11 0.79 16 28 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 29 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 279.20 15.07 4.21 4.21 Total: -1.00 -31.67 279.20 -6.34 -38.02 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.01 Total: 2.52 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.06 Total: -1.71 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.10 Total: -32.08 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.01 Total: -28.52 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.68 Total: 2.66 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.67 -6.34 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593969310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.632 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds