Wall clock time and date at job start Tue Mar 31 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.47293 * 2 1 4 4 C 1.36920 * 119.99671 * 86.69753 * 3 2 1 5 5 H 1.08005 * 119.99371 * 174.87035 * 4 3 2 6 6 C 1.38960 * 120.00570 * 354.86439 * 4 3 2 7 7 N 1.31436 * 119.99815 * 347.84008 * 6 4 3 8 8 Si 1.86802 * 120.00321 * 167.84196 * 6 4 3 9 9 H 1.48497 * 109.46874 * 59.99774 * 8 6 4 10 10 H 1.48501 * 109.47075 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47044 * 300.00211 * 8 6 4 12 12 C 1.34777 * 120.00101 * 266.70145 * 3 2 1 13 13 O 1.21816 * 119.99908 * 184.94219 * 12 3 2 14 14 C 1.41585 * 119.99625 * 4.93647 * 12 3 2 15 15 S 1.75659 * 125.10843 * 17.72626 * 14 12 3 16 16 C 1.75556 * 91.21557 * 179.97438 * 15 14 12 17 17 C 1.34252 * 110.69653 * 359.97262 * 16 15 14 18 18 C 1.37287 * 125.10759 * 197.41665 * 14 12 3 19 19 O 1.37659 * 124.48216 * 0.25620 * 18 14 12 20 20 C 1.43378 * 114.50267 * 163.26400 * 19 18 14 21 21 C 1.53230 * 109.12546 * 46.51816 * 20 19 18 22 22 O 1.38237 * 124.13920 * 180.20364 * 17 16 15 23 23 H 1.08998 * 109.46916 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46810 * 300.00080 * 1 2 3 25 25 H 1.08999 * 109.46498 * 60.00069 * 1 2 3 26 26 H 1.08999 * 109.47355 * 119.99605 * 2 1 3 27 27 H 1.08996 * 109.47537 * 239.99885 * 2 1 3 28 28 H 0.96997 * 119.99921 * 179.97438 * 7 6 4 29 29 H 1.08001 * 124.65407 * 180.02562 * 16 15 14 30 30 H 1.08994 * 109.52739 * 166.41438 * 20 19 18 31 31 H 1.09001 * 109.52667 * 286.55869 * 20 19 18 32 32 H 1.08999 * 109.52120 * 57.65004 * 21 20 19 33 33 H 1.09000 * 109.52038 * 177.77515 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1822 2.0494 1.1838 5 1 2.6198 3.0368 1.1905 6 6 1.7854 1.4573 2.3767 7 7 1.0425 0.3732 2.3569 8 14 2.3077 2.2020 4.0083 9 1 1.7897 3.5902 4.1071 10 1 1.7578 1.3884 5.1223 11 1 3.7902 2.2197 4.0924 12 6 2.3064 1.9942 -1.1653 13 8 2.7970 3.1092 -1.1619 14 6 2.0388 1.3421 -2.3932 15 16 0.9603 -0.0298 -2.5944 16 6 1.2889 -0.0829 -4.3181 17 6 2.1534 0.8834 -4.6663 18 6 2.5785 1.6908 -3.6064 19 8 3.4646 2.7270 -3.7963 20 6 4.1781 2.6790 -5.0390 21 6 3.1907 2.3878 -6.1739 22 8 2.6004 1.0962 -5.9570 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.7658 -0.0404 3.1895 29 1 0.8544 -0.7946 -5.0045 30 1 4.6650 3.6378 -5.2168 31 1 4.9298 1.8907 -4.9974 32 1 2.4150 3.1534 -6.1873 33 1 3.7202 2.3890 -7.1267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593969310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:32 Heat of formation + Delta-G solvation = -58.217424 kcal Electronic energy + Delta-G solvation = -20734.884410 eV Core-core repulsion = 17468.060723 eV Total energy + Delta-G solvation = -3266.823687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.91418 -40.53271 -37.95805 -37.28582 -36.29500 -33.88464 -31.56333 -30.79083 -30.45236 -27.35310 -25.25856 -24.59152 -23.98904 -21.85078 -20.26720 -19.62598 -18.86053 -18.17669 -17.94561 -17.07364 -16.72450 -16.27733 -15.97308 -15.71544 -15.52636 -15.29070 -15.24802 -15.10726 -14.42673 -13.93418 -13.83679 -13.37457 -13.15078 -12.95085 -12.69363 -12.35556 -12.15075 -12.06711 -12.01580 -11.74707 -11.55104 -11.47688 -10.87214 -10.48758 -9.83549 -9.47204 -8.71688 -8.25916 -5.86822 -0.47862 0.49209 0.85156 1.24636 1.43152 1.45621 1.53085 2.24212 2.25390 2.43807 2.60359 2.98788 3.13952 3.29707 3.65391 3.96170 4.04795 4.19398 4.37916 4.41710 4.48476 4.58085 4.67507 4.82363 4.84302 5.05065 5.17016 5.36403 5.52558 5.72126 5.95290 6.02753 6.18157 6.51011 7.12946 7.37873 7.97671 8.60421 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.005906 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.006339 B = 4739.675074 C = 5588.813084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.099 3.901 3 N -0.441 5.441 4 C -0.335 4.335 5 H 0.074 0.926 6 C 0.002 3.998 7 N -0.866 5.866 8 Si 0.994 3.006 9 H -0.278 1.278 10 H -0.261 1.261 11 H -0.277 1.277 12 C 0.485 3.515 13 O -0.632 6.632 14 C -0.291 4.291 15 S 0.293 5.707 16 C -0.252 4.252 17 C 0.019 3.981 18 C 0.084 3.916 19 O -0.304 6.304 20 C 0.001 3.999 21 C 0.020 3.980 22 O -0.303 6.303 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.278 0.722 29 H 0.205 0.795 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 -5.351 -12.693 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 N -0.158 5.158 4 C -0.463 4.463 5 H 0.092 0.908 6 C -0.200 4.200 7 N -0.505 5.505 8 Si 0.817 3.183 9 H -0.203 1.203 10 H -0.185 1.185 11 H -0.202 1.202 12 C 0.278 3.722 13 O -0.523 6.523 14 C -0.411 4.411 15 S 0.559 5.441 16 C -0.389 4.389 17 C -0.036 4.036 18 C 0.023 3.977 19 O -0.218 6.218 20 C -0.074 4.074 21 C -0.056 4.056 22 O -0.219 6.219 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.222 0.778 30 H 0.164 0.836 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.220 -5.805 -11.611 13.038 hybrid contribution 1.379 1.638 -0.168 2.148 sum 0.159 -4.167 -11.778 12.495 Atomic orbital electron populations 1.22182 0.94542 1.02328 1.00704 1.22242 0.96510 0.81964 1.01813 1.44027 1.54534 1.12620 1.04666 1.19701 1.40399 1.01996 0.84234 0.90829 1.25964 0.95088 0.97148 1.01836 1.70154 1.31433 1.20085 1.28790 0.84996 0.78446 0.78128 0.76706 1.20329 1.18525 1.20216 1.15917 0.86339 0.86621 0.83358 1.90622 1.51931 1.22263 1.87466 1.22805 1.13617 1.08696 0.95949 1.84753 1.40582 1.23552 0.95246 1.26172 1.03093 1.04652 1.04932 1.18205 1.01442 0.99607 0.84353 1.19129 0.94771 0.91752 0.92041 1.87136 1.52531 1.42083 1.40057 1.24034 0.94508 1.06578 0.82267 1.23869 0.96847 0.83869 1.00983 1.87035 1.76313 1.35671 1.22874 0.90193 0.90863 0.94624 0.87385 0.91812 0.91135 0.77752 0.83571 0.90426 0.90741 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 8.40 71.98 0.60 -4.94 16 2 C 0.10 4.44 4.85 86.38 0.42 4.85 16 3 N -0.44 -24.13 2.62 -645.56 -1.69 -25.82 16 4 C -0.34 -19.42 9.53 84.07 0.80 -18.62 16 5 H 0.07 4.64 7.19 -2.91 -0.02 4.62 16 6 C 0.00 0.11 5.26 84.93 0.45 0.55 16 7 N -0.87 -41.87 7.47 21.67 0.16 -41.71 16 8 Si 0.99 41.63 29.57 68.60 2.03 43.66 16 9 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 C 0.49 27.34 7.39 85.07 0.63 27.97 16 13 O -0.63 -40.81 15.61 9.66 0.15 -40.66 16 14 C -0.29 -13.36 5.84 22.87 0.13 -13.23 16 15 S 0.29 9.73 15.59 -56.49 -0.88 8.85 16 16 C -0.25 -7.27 11.17 66.91 0.75 -6.52 16 17 C 0.02 0.66 6.54 21.75 0.14 0.80 16 18 C 0.08 3.56 6.56 22.44 0.15 3.70 16 19 O -0.30 -12.89 9.76 -91.67 -0.89 -13.78 16 20 C 0.00 0.04 7.13 72.06 0.51 0.55 16 21 C 0.02 0.43 7.15 72.06 0.52 0.94 16 22 O -0.30 -8.62 10.78 -112.92 -1.22 -9.84 16 23 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 24 H 0.07 3.39 6.09 -2.39 -0.01 3.37 16 25 H 0.04 1.37 5.82 -10.88 -0.06 1.31 16 26 H 0.11 5.17 5.82 -2.39 -0.01 5.16 16 27 H 0.06 2.58 4.65 -19.70 -0.09 2.49 16 28 H 0.28 12.44 8.31 -92.71 -0.77 11.67 16 29 H 0.21 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -74.68 279.20 3.78 -70.90 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.03 Total: 12.34 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.10 Total: -3.94 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -1.53 Total: -67.53 kcal Atomic # 8 Polarization: -62.32 SS G_CDS: -1.96 Total: -64.28 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 9.73 SS G_CDS: -0.88 Total: 8.85 kcal Total: -74.68 3.78 -70.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593969310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.678 kcal (2) G-P(sol) polarization free energy of solvation -74.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds