Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46998 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00237 * 180.02562 * 11 10 9 13 13 O 1.21779 * 119.99998 * 359.97438 * 12 11 10 14 14 C 1.41717 * 120.00487 * 180.02562 * 12 11 10 15 15 S 1.75665 * 125.09746 * 0.02562 * 14 12 11 16 16 C 1.75556 * 91.21064 * 179.97438 * 15 14 12 17 17 C 1.34200 * 110.68287 * 359.97003 * 16 15 14 18 18 C 1.37144 * 125.10916 * 179.71898 * 14 12 11 19 19 O 1.37657 * 124.47600 * 0.27108 * 18 14 12 20 20 C 1.43385 * 114.49901 * 163.26255 * 19 18 14 21 21 C 1.53222 * 109.13124 * 46.53207 * 20 19 18 22 22 O 1.38243 * 124.15000 * 180.21373 * 17 16 15 23 23 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 25 25 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 26 26 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 27 27 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 28 28 H 0.97010 * 119.99909 * 359.97438 * 11 10 9 29 29 H 1.07999 * 124.65961 * 179.97438 * 16 15 14 30 30 H 1.09002 * 109.52953 * 166.43357 * 20 19 18 31 31 H 1.09002 * 109.52469 * 286.56919 * 20 19 18 32 32 H 1.09005 * 109.52142 * 57.63207 * 21 20 19 33 33 H 1.09001 * 109.52160 * 177.75774 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0018 13 8 3.4046 -6.0979 0.0014 14 6 1.4784 -7.3253 0.0018 15 16 -0.2713 -7.4815 0.0005 16 6 -0.1522 -9.2330 0.0007 17 6 1.1326 -9.6207 0.0011 18 6 2.0557 -8.5693 -0.0031 19 8 3.4130 -8.7984 -0.0034 20 6 3.7912 -10.1310 0.3670 21 6 2.9143 -11.1314 -0.3931 22 8 1.5451 -10.9402 -0.0030 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8903 26 1 2.8721 -3.6042 -0.8894 27 1 2.8721 -3.6043 0.8905 28 1 0.5429 -4.9308 0.0019 29 1 -0.9968 -9.9061 0.0005 30 1 4.8380 -10.2968 0.1123 31 1 3.6518 -10.2643 1.4399 32 1 3.0215 -10.9684 -1.4656 33 1 3.2230 -12.1473 -0.1464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594004104.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = -76.683976 kcal Electronic energy + Delta-G solvation = -19332.060744 eV Core-core repulsion = 16064.436288 eV Total energy + Delta-G solvation = -3267.624456 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21070 -39.19531 -37.17261 -35.83008 -34.75982 -32.84552 -30.55550 -30.05602 -29.04153 -25.55676 -24.07877 -23.89395 -21.29689 -20.72016 -19.44036 -19.00796 -17.40817 -17.02101 -16.56139 -16.27267 -15.41930 -15.25852 -15.00590 -14.81459 -14.54655 -14.46558 -14.24069 -13.42689 -13.24520 -13.11743 -12.72938 -12.28316 -11.51669 -11.32312 -11.21974 -11.17052 -11.03691 -10.97166 -10.60699 -10.32005 -9.83395 -9.50153 -9.20454 -8.80145 -8.49780 -8.31015 -8.15765 -6.07633 -4.10221 0.29651 1.19251 1.43220 2.01984 3.01816 3.23159 3.29949 3.37372 3.42450 3.52806 3.62774 3.95190 4.31830 4.44739 4.54482 4.60489 4.98046 5.10682 5.15263 5.24257 5.29509 5.37246 5.76358 6.33750 6.37713 6.42734 6.75742 6.85970 6.90222 7.53730 7.63584 7.90683 7.97558 8.29397 8.61847 8.95874 9.54508 11.04094 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.037523 B = 0.003414 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.030522 B = 8200.343162 C = 8900.370279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.123 3.877 11 N -0.720 5.720 12 C 0.579 3.421 13 O -0.526 6.526 14 C -0.268 4.268 15 S 0.219 5.781 16 C -0.217 4.217 17 C 0.033 3.967 18 C 0.119 3.881 19 O -0.259 6.259 20 C 0.012 3.988 21 C 0.018 3.982 22 O -0.293 6.293 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.393 0.607 29 H 0.181 0.819 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -23.532 -0.047 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.026 4.026 10 C 0.001 3.999 11 N -0.370 5.370 12 C 0.366 3.634 13 O -0.405 6.405 14 C -0.388 4.388 15 S 0.482 5.518 16 C -0.354 4.354 17 C -0.023 4.023 18 C 0.058 3.942 19 O -0.171 6.171 20 C -0.064 4.064 21 C -0.058 4.058 22 O -0.209 6.209 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.226 0.774 29 H 0.198 0.802 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.573 -22.375 -0.046 22.383 hybrid contribution 1.157 -0.314 0.000 1.199 sum 0.585 -22.689 -0.047 22.697 Atomic orbital electron populations 1.69967 1.06074 1.26747 1.50506 1.24999 0.94901 0.99412 0.95018 0.86454 0.80179 0.83329 0.77587 1.19574 1.20949 1.20954 1.21086 0.93308 0.90320 1.51155 0.92142 1.19347 0.94232 0.91110 0.97933 1.21755 0.96036 0.81028 1.01033 1.46247 1.09995 1.06592 1.74201 1.15601 0.87290 0.82390 0.78165 1.90858 1.12509 1.87129 1.50026 1.22805 0.98090 0.96206 1.21711 1.84270 0.98762 0.97325 1.71419 1.24954 0.98592 1.00116 1.11768 1.18226 0.92301 0.84213 1.07601 1.18874 0.84498 0.91361 0.99483 1.87221 1.16455 1.29875 1.83596 1.23718 1.01081 0.81390 1.00261 1.23672 0.80502 1.01500 1.00164 1.87108 1.28461 1.19845 1.85449 0.92910 0.95857 0.95850 0.92291 0.92310 0.77358 0.80199 0.85715 0.90326 0.90289 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.73 5.61 -4.04 -0.02 2.70 16 11 N -0.72 -13.68 5.54 -63.19 -0.35 -14.03 16 12 C 0.58 11.19 7.59 -14.93 -0.11 11.08 16 13 O -0.53 -11.97 15.86 -11.90 -0.19 -12.16 16 14 C -0.27 -4.23 6.25 -38.65 -0.24 -4.47 16 15 S 0.22 2.51 22.17 -107.50 -2.38 0.13 16 16 C -0.22 -2.26 11.17 29.31 0.33 -1.93 16 17 C 0.03 0.41 6.54 -40.38 -0.26 0.14 16 18 C 0.12 1.77 6.57 -39.35 -0.26 1.51 16 19 O -0.26 -3.89 9.60 -49.15 -0.47 -4.36 16 20 C 0.01 0.11 7.13 37.27 0.27 0.37 16 21 C 0.02 0.14 7.15 37.27 0.27 0.40 16 22 O -0.29 -3.17 10.78 -35.39 -0.38 -3.56 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.39 6.57 7.41 -40.82 -0.30 6.26 16 29 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -34.27 302.42 -7.74 -42.02 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -3.65 Total: -0.24 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.59 Total: -3.37 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.39 Total: -39.50 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.04 Total: -20.07 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.38 Total: 0.13 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.27 -7.74 -42.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594004104.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.665 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds