Wall clock time and date at job start Tue Mar 31 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47095 * 2 1 4 4 C 1.50700 * 109.47145 * 239.99875 * 2 1 3 5 5 H 1.07997 * 120.00438 * 275.00892 * 4 2 1 6 6 C 1.37876 * 119.99831 * 95.00156 * 4 2 1 7 7 N 1.31508 * 120.00014 * 184.91713 * 6 4 2 8 8 Si 1.86807 * 119.99828 * 4.91742 * 6 4 2 9 9 H 1.48504 * 109.46641 * 84.83501 * 8 6 4 10 10 H 1.48506 * 109.46923 * 204.82985 * 8 6 4 11 11 H 1.48491 * 109.47240 * 324.83351 * 8 6 4 12 12 N 1.46502 * 109.46687 * 120.00300 * 2 1 3 13 13 C 1.34781 * 119.99823 * 274.99596 * 12 2 1 14 14 O 1.21770 * 119.99957 * 0.02562 * 13 12 2 15 15 C 1.41717 * 120.00054 * 180.02562 * 13 12 2 16 16 S 1.75660 * 125.09998 * 0.02562 * 15 13 12 17 17 C 1.75556 * 91.21206 * 179.97438 * 16 15 13 18 18 C 1.34193 * 110.67859 * 359.97438 * 17 16 15 19 19 C 1.37143 * 125.10538 * 180.02562 * 15 13 12 20 20 O 1.37658 * 124.48224 * 0.37773 * 19 15 13 21 21 C 1.43320 * 114.54737 * 163.38079 * 20 19 15 22 22 C 1.53214 * 109.19528 * 46.33285 * 21 20 19 23 23 O 1.38252 * 124.14342 * 180.23321 * 18 17 16 24 24 H 1.08994 * 109.47489 * 175.03650 * 1 2 3 25 25 H 1.09000 * 109.47367 * 295.03278 * 1 2 3 26 26 H 1.09005 * 109.47361 * 55.03332 * 1 2 3 27 27 H 0.97006 * 120.00278 * 180.02562 * 7 6 4 28 28 H 0.96994 * 120.00070 * 95.00391 * 12 2 1 29 29 H 1.07998 * 124.66021 * 179.97438 * 17 16 15 30 30 H 1.08996 * 109.42837 * 286.45511 * 21 20 19 31 31 H 1.09000 * 109.61742 * 166.32385 * 21 20 19 32 32 H 1.09003 * 109.52314 * 177.90008 * 22 21 20 33 33 H 1.09001 * 109.52603 * 57.71144 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3580 7 7 2.7059 -0.6131 -3.4621 8 14 2.3136 1.8791 -2.3173 9 1 3.5993 2.3948 -1.7820 10 1 2.1059 2.3992 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0182 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8570 1.1631 2.4120 15 6 2.6198 -0.6863 3.5142 16 16 3.0757 -2.3811 3.5866 17 6 3.4816 -2.2377 5.2885 18 6 3.2719 -0.9851 5.7218 19 6 2.7901 -0.1065 4.7453 20 8 2.5161 1.2120 5.0305 21 6 2.4072 1.5087 6.4284 22 6 3.5785 0.8607 7.1737 23 8 3.5053 -0.5629 7.0174 24 1 -0.3634 -1.0237 -0.0889 25 1 -0.3634 0.4348 0.9311 26 1 -0.3634 0.5890 -0.8422 27 1 2.9370 -0.1048 -4.2554 28 1 2.2489 -1.6318 1.1526 29 1 3.8495 -3.0465 5.9025 30 1 1.4672 1.1114 6.8112 31 1 2.4336 2.5883 6.5765 32 1 3.5216 1.1140 8.2323 33 1 4.5193 1.2252 6.7611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594258422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:48 Heat of formation + Delta-G solvation = -70.113821 kcal Electronic energy + Delta-G solvation = -20000.431797 eV Core-core repulsion = 16733.092244 eV Total energy + Delta-G solvation = -3267.339553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09323 -38.99840 -37.06824 -35.74810 -34.72996 -32.37506 -30.60193 -29.95711 -28.86548 -25.32804 -24.74753 -23.87254 -21.49679 -19.91253 -19.29888 -19.04671 -17.46179 -17.18140 -16.38231 -16.27688 -15.47077 -15.08065 -14.87969 -14.68801 -14.43028 -14.11782 -13.83794 -13.32047 -13.01319 -12.75941 -12.49581 -12.35461 -11.50919 -11.37197 -11.18787 -11.09401 -11.03711 -10.87217 -10.77264 -10.54478 -9.85845 -9.28688 -9.18006 -8.68509 -8.62092 -8.05837 -8.00992 -6.21579 -4.25276 0.45351 1.33357 1.57666 2.16119 3.13554 3.28964 3.35554 3.36423 3.44565 3.78980 3.84945 4.12761 4.35025 4.47442 4.63774 4.69830 5.07485 5.16995 5.23268 5.27770 5.35351 5.61351 5.92358 6.37637 6.51324 6.56056 6.70839 6.95566 7.00283 7.21568 7.39634 7.55942 8.13734 8.55805 8.78541 8.94950 9.40480 10.90057 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.027065 B = 0.004903 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.298648 B = 5709.747589 C = 6302.459532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.232 3.768 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.083 3.917 7 N -0.888 5.888 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.701 5.701 13 C 0.573 3.427 14 O -0.534 6.534 15 C -0.259 4.259 16 S 0.219 5.781 17 C -0.223 4.223 18 C 0.034 3.966 19 C 0.112 3.888 20 O -0.258 6.258 21 C 0.012 3.988 22 C 0.018 3.982 23 O -0.294 6.294 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.268 0.732 28 H 0.389 0.611 29 H 0.179 0.821 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -1.507 20.847 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.130 3.870 3 H 0.070 0.930 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.525 5.525 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.350 5.350 13 C 0.358 3.642 14 O -0.414 6.414 15 C -0.379 4.379 16 S 0.482 5.518 17 C -0.360 4.360 18 C -0.022 4.022 19 C 0.051 3.949 20 O -0.171 6.171 21 C -0.064 4.064 22 C -0.058 4.058 23 O -0.210 6.210 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.222 0.778 29 H 0.196 0.804 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.386 -1.772 19.611 19.740 hybrid contribution 0.192 1.741 1.127 2.083 sum 1.578 -0.032 20.738 20.798 Atomic orbital electron populations 1.22218 0.98451 1.00643 0.99335 1.19153 0.91020 0.94371 0.82447 0.93042 1.21002 1.45293 0.95657 0.94875 0.90259 1.24921 0.93544 0.98609 0.95122 1.69878 1.44718 1.36188 1.01686 0.86909 0.79908 0.85889 0.77332 1.19814 1.21161 1.18405 1.46593 1.65180 1.13404 1.09806 1.15710 0.79296 0.86873 0.82271 1.90826 1.51125 1.14795 1.84674 1.22975 1.17860 0.98911 0.98204 1.84239 1.62530 1.03297 1.01749 1.24921 1.11240 0.99619 1.00202 1.18229 1.04739 0.93580 0.85689 1.18864 0.98232 0.85446 0.92337 1.87210 1.86113 1.19932 1.23866 1.23675 0.98705 1.03119 0.80914 1.23617 0.99242 0.79765 1.03186 1.87035 1.89094 1.22967 1.21861 0.93350 0.95139 0.92808 0.92235 0.77780 0.80359 0.90501 0.85831 0.85991 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.47 37.16 0.35 -2.99 16 2 C 0.23 5.73 2.22 -69.08 -0.15 5.58 16 3 H 0.05 1.38 4.73 -51.93 -0.25 1.14 16 4 C -0.53 -14.47 9.05 -34.44 -0.31 -14.79 16 5 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 7 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 8 Si 0.87 21.88 26.99 -169.99 -4.59 17.29 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.26 -6.43 6.82 56.52 0.39 -6.04 16 12 N -0.70 -15.16 5.05 -57.80 -0.29 -15.45 16 13 C 0.57 12.34 7.56 -14.93 -0.11 12.23 16 14 O -0.53 -13.33 15.52 -11.89 -0.18 -13.51 16 15 C -0.26 -4.55 6.25 -38.65 -0.24 -4.79 16 16 S 0.22 2.82 22.17 -107.50 -2.38 0.44 16 17 C -0.22 -2.59 11.17 29.31 0.33 -2.26 16 18 C 0.03 0.47 6.55 -40.38 -0.26 0.20 16 19 C 0.11 1.84 6.58 -39.35 -0.26 1.58 16 20 O -0.26 -4.27 9.60 -49.15 -0.47 -4.74 16 21 C 0.01 0.13 7.14 37.27 0.27 0.39 16 22 C 0.02 0.16 7.14 37.27 0.27 0.43 16 23 O -0.29 -3.51 10.77 -35.42 -0.38 -3.89 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.39 7.47 7.53 -40.82 -0.31 7.17 16 29 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 297.34 15.07 4.48 4.48 Total: -1.00 -34.11 297.34 -6.78 -40.90 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.51 Total: 2.16 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.23 Total: -2.18 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.48 Total: -40.95 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.04 Total: -22.14 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.59 Total: 17.29 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.38 Total: 0.44 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.11 -6.78 -40.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594258422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.215 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds