Wall clock time and date at job start Tue Mar 31 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47095 * 2 1 4 4 C 1.50700 * 109.47145 * 239.99875 * 2 1 3 5 5 H 1.07997 * 120.00438 * 275.00892 * 4 2 1 6 6 C 1.37876 * 119.99831 * 95.00156 * 4 2 1 7 7 N 1.31508 * 120.00014 * 184.91713 * 6 4 2 8 8 Si 1.86807 * 119.99828 * 4.91742 * 6 4 2 9 9 H 1.48504 * 109.46641 * 84.83501 * 8 6 4 10 10 H 1.48506 * 109.46923 * 204.82985 * 8 6 4 11 11 H 1.48491 * 109.47240 * 324.83351 * 8 6 4 12 12 N 1.46502 * 109.46687 * 120.00300 * 2 1 3 13 13 C 1.34781 * 119.99823 * 274.99596 * 12 2 1 14 14 O 1.21770 * 119.99957 * 0.02562 * 13 12 2 15 15 C 1.41717 * 120.00054 * 180.02562 * 13 12 2 16 16 S 1.75660 * 125.09998 * 0.02562 * 15 13 12 17 17 C 1.75556 * 91.21206 * 179.97438 * 16 15 13 18 18 C 1.34193 * 110.67859 * 359.97438 * 17 16 15 19 19 C 1.37143 * 125.10538 * 180.02562 * 15 13 12 20 20 O 1.37658 * 124.48224 * 0.37773 * 19 15 13 21 21 C 1.43320 * 114.54737 * 163.38079 * 20 19 15 22 22 C 1.53214 * 109.19528 * 46.33285 * 21 20 19 23 23 O 1.38252 * 124.14342 * 180.23321 * 18 17 16 24 24 H 1.08994 * 109.47489 * 175.03650 * 1 2 3 25 25 H 1.09000 * 109.47367 * 295.03278 * 1 2 3 26 26 H 1.09005 * 109.47361 * 55.03332 * 1 2 3 27 27 H 0.97006 * 120.00278 * 180.02562 * 7 6 4 28 28 H 0.96994 * 120.00070 * 95.00391 * 12 2 1 29 29 H 1.07998 * 124.66021 * 179.97438 * 17 16 15 30 30 H 1.08996 * 109.42837 * 286.45511 * 21 20 19 31 31 H 1.09000 * 109.61742 * 166.32385 * 21 20 19 32 32 H 1.09003 * 109.52314 * 177.90008 * 22 21 20 33 33 H 1.09001 * 109.52603 * 57.71144 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3580 7 7 2.7059 -0.6131 -3.4621 8 14 2.3136 1.8791 -2.3173 9 1 3.5993 2.3948 -1.7820 10 1 2.1059 2.3992 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0182 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8570 1.1631 2.4120 15 6 2.6198 -0.6863 3.5142 16 16 3.0757 -2.3811 3.5866 17 6 3.4816 -2.2377 5.2885 18 6 3.2719 -0.9851 5.7218 19 6 2.7901 -0.1065 4.7453 20 8 2.5161 1.2120 5.0305 21 6 2.4072 1.5087 6.4284 22 6 3.5785 0.8607 7.1737 23 8 3.5053 -0.5629 7.0174 24 1 -0.3634 -1.0237 -0.0889 25 1 -0.3634 0.4348 0.9311 26 1 -0.3634 0.5890 -0.8422 27 1 2.9370 -0.1048 -4.2554 28 1 2.2489 -1.6318 1.1526 29 1 3.8495 -3.0465 5.9025 30 1 1.4672 1.1114 6.8112 31 1 2.4336 2.5883 6.5765 32 1 3.5216 1.1140 8.2323 33 1 4.5193 1.2252 6.7611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594258422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:48 Heat of formation + Delta-G solvation = -95.422289 kcal Electronic energy + Delta-G solvation = -20001.529255 eV Core-core repulsion = 16733.092244 eV Total energy + Delta-G solvation = -3268.437011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.10955 -40.61636 -38.08693 -36.99976 -36.42049 -34.43005 -32.26808 -30.78800 -30.23900 -27.35773 -26.03356 -24.73251 -23.02514 -21.64221 -20.49476 -20.30427 -19.01488 -18.33350 -17.84911 -17.47248 -17.01217 -16.36743 -16.17705 -15.82037 -15.68730 -15.42576 -15.35485 -14.73602 -14.53929 -14.32831 -14.08882 -13.72261 -13.30585 -13.05194 -12.81119 -12.47171 -12.37857 -12.09257 -12.00644 -11.88703 -11.78054 -11.26203 -11.01352 -10.84267 -10.00632 -9.58960 -9.04954 -8.40199 -6.46549 -0.70278 0.27739 0.54120 1.07985 1.28276 1.32604 1.43931 2.12759 2.26099 2.27518 2.33303 2.50843 2.99962 3.14600 3.56004 3.92668 3.98274 4.10094 4.25427 4.40944 4.45633 4.53937 4.59951 4.70757 4.79606 4.87821 5.06941 5.32683 5.42939 5.61689 5.66635 6.00014 6.10367 6.56718 6.77825 7.18012 7.32897 8.74623 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.027065 B = 0.004903 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.298648 B = 5709.747589 C = 6302.459532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.235 3.765 3 H 0.030 0.970 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.038 3.962 7 N -0.926 5.926 8 Si 0.923 3.077 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.258 1.258 12 N -0.702 5.702 13 C 0.576 3.424 14 O -0.580 6.580 15 C -0.320 4.320 16 S 0.259 5.741 17 C -0.189 4.189 18 C 0.015 3.985 19 C 0.120 3.880 20 O -0.297 6.297 21 C 0.001 3.999 22 C 0.018 3.982 23 O -0.297 6.297 24 H 0.060 0.940 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.272 0.728 28 H 0.399 0.601 29 H 0.218 0.782 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -1.983 23.422 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.131 3.869 3 H 0.048 0.952 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.163 4.163 7 N -0.564 5.564 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.182 1.182 12 N -0.352 5.352 13 C 0.365 3.635 14 O -0.463 6.463 15 C -0.440 4.440 16 S 0.523 5.477 17 C -0.326 4.326 18 C -0.041 4.041 19 C 0.057 3.943 20 O -0.210 6.210 21 C -0.074 4.074 22 C -0.057 4.057 23 O -0.213 6.213 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.235 0.765 29 H 0.235 0.765 30 H 0.101 0.899 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.778 -2.270 22.202 22.388 hybrid contribution 0.106 1.830 0.505 1.901 sum 1.885 -0.440 22.706 22.788 Atomic orbital electron populations 1.22108 0.96855 1.01467 0.99497 1.18943 0.92206 0.93100 0.82630 0.95177 1.21145 1.44652 0.94898 0.95886 0.92229 1.25540 0.93606 1.02205 0.94930 1.69960 1.46343 1.37699 1.02404 0.86108 0.79633 0.81634 0.77801 1.20202 1.19799 1.18189 1.46317 1.65675 1.13867 1.09322 1.16083 0.78148 0.86389 0.82915 1.90776 1.53217 1.16759 1.85550 1.22679 1.22048 1.01934 0.97327 1.84024 1.61518 0.99578 1.02605 1.25448 1.07736 0.99844 0.99605 1.18220 1.06021 0.93706 0.86115 1.19233 0.96653 0.85791 0.92610 1.87147 1.85836 1.20406 1.27633 1.24092 0.99848 1.05062 0.78350 1.23892 0.98324 0.78117 1.05416 1.87033 1.89077 1.24637 1.20508 0.92115 0.94673 0.92954 0.91890 0.76542 0.76497 0.89881 0.83288 0.81759 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.34 9.47 71.98 0.68 -5.66 16 2 C 0.23 11.72 2.22 44.25 0.10 11.81 16 3 H 0.03 1.65 4.73 -2.39 -0.01 1.63 16 4 C -0.53 -29.23 9.05 25.60 0.23 -29.00 16 5 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 6 C 0.04 2.18 5.47 84.66 0.46 2.64 16 7 N -0.93 -55.42 13.96 21.45 0.30 -55.12 16 8 Si 0.92 45.55 26.99 68.60 1.85 47.40 16 9 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.26 -12.53 6.82 99.48 0.68 -11.85 16 12 N -0.70 -30.78 5.05 -454.97 -2.30 -33.08 16 13 C 0.58 25.28 7.56 85.10 0.64 25.92 16 14 O -0.58 -29.79 15.52 11.70 0.18 -29.61 16 15 C -0.32 -11.19 6.25 22.87 0.14 -11.05 16 16 S 0.26 6.20 22.17 -56.49 -1.25 4.94 16 17 C -0.19 -3.74 11.17 66.90 0.75 -2.99 16 18 C 0.02 0.38 6.55 21.75 0.14 0.52 16 19 C 0.12 3.84 6.58 22.42 0.15 3.99 16 20 O -0.30 -9.76 9.60 -90.59 -0.87 -10.63 16 21 C 0.00 0.03 7.14 72.05 0.51 0.54 16 22 C 0.02 0.26 7.14 72.05 0.51 0.78 16 23 O -0.30 -6.15 10.77 -113.12 -1.22 -7.37 16 24 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 28 H 0.40 15.48 7.53 -92.71 -0.70 14.78 16 29 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.17 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -75.62 297.34 1.45 -74.17 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.43 Total: 11.78 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 4.33 Total: -2.48 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.00 Total: -88.20 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -1.91 Total: -47.61 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.85 Total: 47.40 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.25 Total: 4.94 kcal Total: -75.62 1.45 -74.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594258422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.252 kcal (2) G-P(sol) polarization free energy of solvation -75.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds