Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38346 * 120.01072 * 2 1 4 4 Br 1.89104 * 120.00587 * 0.02873 * 3 2 1 5 5 C 1.38297 * 119.98236 * 180.25448 * 3 2 1 6 6 C 1.38240 * 119.99224 * 359.77066 * 5 3 2 7 7 C 1.38226 * 120.00751 * 359.97438 * 6 5 3 8 8 C 1.38202 * 120.00286 * 179.77366 * 2 1 3 9 9 C 1.50697 * 119.99366 * 359.97438 * 8 2 1 10 10 N 1.46905 * 109.47066 * 79.72604 * 9 8 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46907 * 60.00117 * 16 14 12 18 18 H 1.48504 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47302 * 300.00070 * 16 14 12 20 20 H 1.09001 * 109.47041 * 270.22889 * 1 2 3 21 21 H 1.09000 * 109.47153 * 30.22590 * 1 2 3 22 22 H 1.09002 * 109.47173 * 150.22470 * 1 2 3 23 23 H 1.08002 * 120.00594 * 179.79455 * 5 3 2 24 24 H 1.07995 * 119.99954 * 179.97438 * 6 5 3 25 25 H 1.07996 * 119.98835 * 179.97438 * 7 6 5 26 26 H 1.09001 * 109.47558 * 319.72768 * 9 8 2 27 27 H 1.08998 * 109.47216 * 199.72430 * 9 8 2 28 28 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 29 29 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 30 30 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 31 31 H 0.97001 * 119.99132 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1980 0.0000 4 35 1.2539 2.8359 0.0008 5 6 3.5819 1.1973 -0.0053 6 6 4.2723 -0.0003 -0.0058 7 6 3.5806 -1.1970 -0.0005 8 6 2.1980 -1.1968 0.0047 9 6 1.4445 -2.5018 0.0105 10 7 0.9852 -2.8080 -1.3509 11 6 0.2442 -4.0761 -1.3838 12 6 -0.2093 -4.3564 -2.7933 13 1 0.0286 -3.6619 -3.5854 14 6 -0.9290 -5.4992 -3.0715 15 7 -1.2191 -6.3447 -2.1068 16 14 -1.4918 -5.8463 -4.8185 17 1 -0.3081 -5.9418 -5.7101 18 1 -2.2407 -7.1283 -4.8517 19 1 -2.3735 -4.7452 -5.2825 20 1 -0.3633 0.0041 1.0277 21 1 -0.3633 0.8879 -0.5173 22 1 -0.3633 -0.8920 -0.5103 23 1 4.1224 2.1323 -0.0087 24 1 5.3523 -0.0010 -0.0104 25 1 4.1203 -2.1325 -0.0013 26 1 0.5840 -2.4217 0.6748 27 1 2.1006 -3.2988 0.3604 28 1 1.7588 -2.8240 -1.9985 29 1 0.8918 -4.8842 -1.0434 30 1 -0.6245 -4.0064 -0.7292 31 1 -1.7251 -7.1487 -2.3027 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594570678.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = 15.676901 kcal Electronic energy + Delta-G solvation = -14225.496663 eV Core-core repulsion = 11745.405882 eV Total energy + Delta-G solvation = -2480.090781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56526 -35.47580 -33.01962 -32.84759 -31.50064 -29.53201 -27.31131 -26.45824 -24.30286 -21.62224 -21.43991 -20.54185 -16.71761 -16.06958 -15.90006 -14.90993 -14.56908 -14.28061 -13.91635 -13.18886 -13.08798 -13.03734 -12.33421 -12.08945 -11.93155 -11.71424 -11.36736 -11.02415 -10.96727 -10.71006 -10.68204 -10.57658 -10.05199 -9.93961 -9.25294 -8.61457 -8.52238 -8.48791 -7.37061 -6.05593 -4.07741 1.18275 1.36500 1.68693 3.32823 3.36691 3.39962 3.65802 4.41926 4.80881 4.86851 5.03666 5.26519 5.30535 5.36393 5.47767 5.63507 5.82198 5.89281 5.95764 6.02449 6.18674 6.28311 6.41786 6.58677 6.74178 6.92779 7.18303 7.36553 7.74394 8.08205 8.32055 8.54426 9.01030 9.57355 11.05404 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.028260 B = 0.004054 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.560415 B = 6905.651034 C = 7432.773780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.028 4.028 3 C -0.097 4.097 4 Br -0.060 7.060 5 C -0.096 4.096 6 C -0.126 4.126 7 C -0.098 4.098 8 C -0.068 4.068 9 C 0.094 3.906 10 N -0.682 5.682 11 C 0.194 3.806 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.101 0.899 23 H 0.126 0.874 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.331 0.669 29 H -0.013 1.013 30 H 0.029 0.971 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.725 17.108 6.810 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.030 4.030 3 C -0.176 4.176 4 Br 0.026 6.974 5 C -0.116 4.116 6 C -0.145 4.145 7 C -0.117 4.117 8 C -0.069 4.069 9 C -0.035 4.035 10 N -0.312 5.312 11 C 0.068 3.932 12 C -0.554 4.554 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.201 1.201 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.120 0.880 23 H 0.144 0.856 24 H 0.145 0.855 25 H 0.144 0.856 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.147 0.853 29 H 0.005 0.995 30 H 0.047 0.953 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.677 17.916 6.902 20.677 hybrid contribution 0.702 -1.278 -0.791 1.658 sum 8.379 16.638 6.111 19.606 Atomic orbital electron populations 1.21123 0.90003 1.05342 1.02568 1.19695 0.97011 0.90576 0.95741 1.21705 0.94565 0.90957 1.10366 1.96616 1.76246 1.26816 1.97756 1.20982 0.91988 0.98811 0.99852 1.21029 0.99794 0.91874 1.01763 1.21241 0.93802 0.98329 0.98335 1.19950 0.93250 0.95002 0.98693 1.20882 0.97409 0.90992 0.94258 1.60712 1.28248 1.38698 1.03590 1.19582 0.92739 0.83167 0.97739 1.21130 1.34592 1.05802 0.93860 0.91982 1.24979 0.96046 0.96002 0.97445 1.69953 1.39818 1.11973 1.31986 0.86537 0.78813 0.77436 0.84478 1.20273 1.21332 1.20119 0.91212 0.91085 0.88024 0.85555 0.85550 0.85647 0.90477 0.95205 0.85276 0.99510 0.95276 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.80 36.00 0.32 -1.66 16 2 C -0.03 -0.42 5.88 -104.60 -0.62 -1.03 16 3 C -0.10 -1.32 6.22 -39.52 -0.25 -1.56 16 4 Br -0.06 -0.73 31.79 -68.01 -2.16 -2.89 16 5 C -0.10 -1.16 9.79 -39.56 -0.39 -1.55 16 6 C -0.13 -1.45 10.05 -39.59 -0.40 -1.85 16 7 C -0.10 -1.29 9.67 -39.58 -0.38 -1.67 16 8 C -0.07 -1.02 5.39 -104.63 -0.56 -1.59 16 9 C 0.09 1.62 4.94 -4.97 -0.02 1.59 16 10 N -0.68 -14.14 5.80 -116.34 -0.67 -14.82 16 11 C 0.19 4.96 5.44 -4.98 -0.03 4.93 16 12 C -0.52 -14.40 9.32 -34.44 -0.32 -14.72 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 16 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.07 1.00 6.66 -51.93 -0.35 0.65 16 22 H 0.10 1.74 6.33 -51.93 -0.33 1.41 16 23 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 24 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 25 H 0.13 1.46 8.04 -52.49 -0.42 1.04 16 26 H 0.08 1.34 7.30 -51.93 -0.38 0.96 16 27 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 28 H 0.33 6.71 8.72 -39.29 -0.34 6.37 16 29 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 284.39 15.07 4.29 4.29 Total: -1.00 -29.04 284.39 -9.47 -38.51 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -3.89 Total: 1.77 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.75 Total: -17.59 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.06 Total: -40.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.16 Total: -2.89 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.04 -9.47 -38.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594570678.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.189 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds