Wall clock time and date at job start Tue Mar 31 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46503 * 125.86801 * 180.10838 * 12 11 10 14 14 C 1.50704 * 109.46910 * 125.32711 * 13 12 11 15 15 C 1.33346 * 125.18762 * 89.99734 * 14 13 12 16 16 C 1.38469 * 114.93134 * 179.97438 * 15 14 13 17 17 C 1.33503 * 114.88320 * 0.02562 * 16 15 14 18 18 Cl 1.73601 * 125.20779 * 180.02562 * 17 16 15 19 19 S 1.75881 * 125.19076 * 269.70180 * 14 13 12 20 20 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 21 21 N 1.28632 * 110.17939 * 359.72812 * 20 12 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 26 26 H 1.08989 * 109.47681 * 245.32765 * 13 12 11 27 27 H 1.08998 * 109.46818 * 5.33334 * 13 12 11 28 28 H 1.07998 * 122.53448 * 359.96724 * 15 14 13 29 29 H 1.08003 * 122.55750 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2870 -4.6655 0.8765 12 7 3.3139 -5.4525 0.4802 13 6 3.7544 -6.6850 1.1383 14 6 3.7701 -7.8111 0.1370 15 6 4.8122 -8.1490 -0.6233 16 6 4.5926 -9.2210 -1.4717 17 6 3.3702 -9.7530 -1.3998 18 17 2.8084 -11.1006 -2.3390 19 16 2.4190 -8.8850 -0.2019 20 7 3.8413 -4.9286 -0.5706 21 7 3.2179 -3.8494 -0.8890 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 1.6411 -4.8218 1.7279 26 1 4.7571 -6.5433 1.5414 27 1 3.0680 -6.9292 1.9490 28 1 5.7561 -7.6259 -0.5805 29 1 5.3519 -9.5974 -2.1412 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594650424.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:03 Heat of formation + Delta-G solvation = 124.105478 kcal Electronic energy + Delta-G solvation = -16444.363367 eV Core-core repulsion = 13522.614616 eV Total energy + Delta-G solvation = -2921.748751 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.54293 -38.46232 -37.01261 -34.77250 -33.21350 -31.07448 -30.48962 -27.47930 -26.66149 -23.81955 -23.37217 -21.38744 -20.32856 -19.83508 -17.85361 -16.90743 -16.38725 -16.08339 -15.40576 -14.57034 -14.23152 -14.20618 -13.88112 -13.48754 -13.35554 -12.76599 -12.32333 -12.06771 -11.89551 -11.68818 -11.45668 -11.04450 -11.01055 -10.71918 -10.66312 -10.11887 -9.71767 -9.49790 -9.31826 -9.00156 -8.85303 -8.43133 -8.14368 -5.98498 -3.99154 0.34666 0.73366 1.43634 1.86847 2.13503 2.23398 2.93500 3.38883 3.41474 3.43064 3.51490 4.16989 4.41113 4.51882 4.92098 4.96705 5.13064 5.17209 5.38275 5.56245 5.68992 5.81765 5.96267 6.05725 6.27286 7.09282 7.12815 7.52631 7.62279 7.99035 8.37314 9.03839 9.28457 9.63545 11.12527 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.039406 B = 0.003196 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.372138 B = 8759.799587 C = 8910.982681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.092 3.908 10 C 0.037 3.963 11 C -0.084 4.084 12 N -0.307 5.307 13 C 0.197 3.803 14 C -0.204 4.204 15 C -0.088 4.088 16 C -0.120 4.120 17 C -0.142 4.142 18 Cl -0.013 7.013 19 S 0.169 5.831 20 N -0.100 5.100 21 N -0.259 5.259 22 H 0.262 0.738 23 H 0.036 0.964 24 H 0.039 0.961 25 H 0.182 0.818 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.154 0.846 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -22.837 2.746 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.099 4.099 11 C -0.232 4.232 12 N -0.103 5.103 13 C 0.073 3.927 14 C -0.322 4.322 15 C -0.120 4.120 16 C -0.153 4.153 17 C -0.287 4.287 18 Cl 0.015 6.985 19 S 0.432 5.568 20 N -0.079 5.079 21 N -0.127 5.127 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.199 0.801 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.172 0.828 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.935 -23.124 2.155 23.971 hybrid contribution 0.999 0.825 0.221 1.314 sum 6.934 -22.299 2.375 23.473 Atomic orbital electron populations 1.69938 1.05963 1.26868 1.50995 1.24975 0.94885 0.99225 0.95332 0.86569 0.79482 0.82742 0.78709 1.20114 1.21320 1.20343 1.21001 0.93197 0.89759 1.50312 0.92344 1.17733 0.90880 0.87541 0.98527 1.23033 0.97681 0.97663 0.91549 1.23388 0.97584 0.96197 1.05989 1.47188 1.23205 1.18766 1.21151 1.20150 1.03686 0.77320 0.91501 1.24434 0.97862 1.03260 1.06665 1.20046 1.00376 0.96597 0.94933 1.20217 0.96072 0.97286 1.01694 1.25332 0.99015 0.99795 1.04524 1.98375 1.88719 1.41292 1.70109 1.84481 1.14107 1.24256 1.33913 1.78204 1.21489 1.06644 1.01528 1.75096 1.06900 1.07130 1.23531 0.92867 0.94533 0.94279 0.80067 0.86754 0.86934 0.82841 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.86 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 7 C -0.50 -14.51 9.09 -34.44 -0.31 -14.82 15 8 H 0.06 1.71 7.74 -52.49 -0.41 1.31 15 9 C 0.09 2.39 5.55 -29.03 -0.16 2.23 15 10 C 0.04 0.85 6.44 -82.78 -0.53 0.32 15 11 C -0.08 -1.48 11.49 -17.05 -0.20 -1.68 15 12 N -0.31 -4.89 3.43 -62.44 -0.21 -5.11 15 13 C 0.20 1.99 6.95 -5.19 -0.04 1.96 15 14 C -0.20 -2.12 5.88 -36.02 -0.21 -2.33 15 15 C -0.09 -0.87 10.05 -41.21 -0.41 -1.28 15 16 C -0.12 -1.15 10.13 -41.15 -0.42 -1.56 15 17 C -0.14 -1.45 7.10 29.08 0.21 -1.24 15 18 Cl -0.01 -0.13 29.29 -51.86 -1.52 -1.65 15 19 S 0.17 1.73 23.33 -107.50 -2.51 -0.78 15 20 N -0.10 -1.98 12.92 60.35 0.78 -1.20 15 21 N -0.26 -6.13 12.40 33.29 0.41 -5.72 15 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 23 H 0.04 0.94 8.12 -51.93 -0.42 0.52 15 24 H 0.04 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.18 2.50 8.06 -52.49 -0.42 2.07 15 26 H 0.11 0.91 8.14 -51.94 -0.42 0.49 15 27 H 0.11 0.80 8.07 -51.93 -0.42 0.39 15 28 H 0.15 1.32 8.06 -52.49 -0.42 0.90 15 29 H 0.15 1.15 8.06 -52.48 -0.42 0.73 15 LS Contribution 296.33 15.07 4.47 4.47 Total: -1.00 -33.27 296.33 -7.54 -40.81 By element: Atomic # 1 Polarization: -2.65 SS G_CDS: -2.50 Total: -5.14 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.17 Total: -16.87 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 1.71 Total: -37.89 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.51 Total: -0.78 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.52 Total: -1.65 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.27 -7.54 -40.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650424.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.912 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds