Wall clock time and date at job start Tue Mar 31 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47194 * 2 1 4 4 N 1.29323 * 126.05660 * 90.02294 * 3 2 1 5 5 N 1.26103 * 117.97380 * 179.97438 * 4 3 2 6 6 C 1.30310 * 117.60614 * 0.02562 * 5 4 3 7 7 S 1.76196 * 126.16957 * 179.97438 * 6 5 4 8 8 C 1.81003 * 100.00304 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47126 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47182 * 305.00274 * 9 8 7 11 11 C 1.47204 * 109.46818 * 65.00107 * 9 8 7 12 12 N 9.00237 * 95.11403 * 356.31500 * 2 1 3 13 13 C 1.52996 * 109.47040 * 184.99875 * 9 8 7 14 14 C 1.50697 * 109.47200 * 175.00250 * 13 9 8 15 15 H 1.07996 * 119.99812 * 0.02562 * 14 13 9 16 16 C 1.37875 * 119.99942 * 180.02562 * 14 13 9 17 17 N 1.31516 * 120.00304 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99867 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47308 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47180 * 119.99770 * 18 16 14 21 21 H 1.48504 * 109.46763 * 239.99607 * 18 16 14 22 22 S 1.76481 * 126.06432 * 270.00569 * 3 2 1 23 23 H 1.09005 * 109.46977 * 299.99803 * 1 2 3 24 24 H 1.09003 * 109.47077 * 59.99675 * 1 2 3 25 25 H 1.08993 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47196 * 240.00690 * 2 1 3 27 27 H 1.08991 * 109.47459 * 120.00264 * 2 1 3 28 28 H 1.08992 * 109.46636 * 300.00275 * 8 7 6 29 29 H 1.09002 * 109.46711 * 59.99694 * 8 7 6 30 30 H 1.09004 * 109.47460 * 295.00350 * 13 9 8 31 31 H 1.09002 * 109.46989 * 55.00154 * 13 9 8 32 32 H 0.96996 * 119.99874 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2865 2.1383 1.0455 5 7 2.7030 3.3153 0.8682 6 6 2.8477 3.7260 -0.3600 7 16 3.4102 5.3177 -0.8647 8 6 3.6823 6.0826 0.7530 9 6 4.1889 7.5135 0.5618 10 1 5.0777 7.5030 -0.0689 11 6 3.1409 8.3233 -0.0805 12 7 2.3324 8.9480 -0.5763 13 6 4.5371 8.1175 1.9238 14 6 5.1505 9.4799 1.7271 15 1 5.2787 9.8755 0.7305 16 6 5.5479 10.2211 2.8196 17 7 5.3913 9.7395 4.0333 18 14 6.3076 11.9102 2.5759 19 1 6.3721 12.2193 1.1249 20 1 5.4762 12.9308 3.2633 21 1 7.6788 11.9231 3.1458 22 16 2.3785 2.4004 -1.4266 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.7449 6.0998 1.3089 29 1 4.4229 5.5062 1.3074 30 1 3.6310 8.2099 2.5226 31 1 5.2476 7.4698 2.4375 32 1 5.6706 10.2612 4.8019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594733521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:55 Heat of formation + Delta-G solvation = 65.289151 kcal Electronic energy + Delta-G solvation = -16306.637095 eV Core-core repulsion = 13520.214677 eV Total energy + Delta-G solvation = -2786.422418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05010 -36.88356 -34.81309 -34.08261 -32.33066 -30.75311 -27.88781 -26.86231 -24.14333 -23.71264 -21.97746 -20.79389 -19.24353 -17.55931 -16.84574 -16.49569 -15.89288 -15.35050 -14.88014 -14.50762 -14.12454 -13.97358 -13.61714 -13.12391 -13.03945 -12.77021 -12.29022 -12.14725 -12.03065 -11.69422 -11.55646 -11.27603 -11.12610 -10.83133 -10.64657 -10.60649 -10.55890 -10.43151 -10.21958 -9.78947 -9.63802 -9.31784 -8.51903 -7.85825 -6.15307 -4.19807 0.11356 0.40967 0.99617 1.34283 2.00632 2.38941 3.25504 3.34029 3.37849 3.41478 3.50230 3.86739 4.35821 4.51561 4.53884 4.75704 4.79326 4.92502 5.11461 5.22827 5.33481 5.34463 5.38430 5.54424 5.76671 5.79173 6.12167 6.26949 7.33426 7.40759 7.78438 8.12487 8.25034 8.38898 8.84323 9.46293 10.95347 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.036157 B = 0.003263 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.210843 B = 8579.606411 C = 8996.700142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 C 0.025 3.975 4 N -0.248 5.248 5 N -0.266 5.266 6 C 0.006 3.994 7 S 0.021 5.979 8 C -0.098 4.098 9 C 0.022 3.978 10 H 0.114 0.886 11 C 0.233 3.767 12 N -0.454 5.454 13 C 0.037 3.963 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 S 0.089 5.911 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 -20.171 -9.987 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 C -0.259 4.259 4 N -0.084 5.084 5 N -0.107 5.107 6 C -0.380 4.380 7 S 0.254 5.746 8 C -0.249 4.249 9 C -0.002 4.002 10 H 0.132 0.868 11 C -0.085 4.085 12 N -0.130 5.130 13 C -0.003 4.003 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 S 0.329 5.671 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.185 -18.646 -11.354 22.690 hybrid contribution 0.586 0.290 1.399 1.545 sum -5.599 -18.356 -9.955 21.619 Atomic orbital electron populations 1.21799 0.93118 1.02872 1.02986 1.20174 0.96909 0.86325 1.04771 1.29932 1.03954 1.02910 0.89149 1.70755 1.11767 0.98979 1.26875 1.71781 1.16322 1.06757 1.15876 1.31547 1.05755 1.06008 0.94730 1.86000 1.77510 0.97669 1.13409 1.24018 1.07707 0.98236 0.94931 1.19067 0.92105 0.87059 1.01942 0.86833 1.28964 0.93740 0.93449 0.92346 1.81015 1.11329 1.09672 1.11023 1.19239 0.98256 0.96152 0.86609 1.21120 1.41282 1.01264 0.93150 0.92275 1.24951 0.95571 0.98240 0.95112 1.69946 1.46931 1.37902 0.97874 0.86509 0.78953 0.84021 0.78448 1.19637 1.20912 1.20760 1.85676 1.62772 1.06239 1.12405 0.91697 0.92262 0.90995 0.89202 0.88107 0.87675 0.86256 0.95086 0.93750 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.04 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.03 0.28 7.04 -13.33 -0.09 0.18 16 4 N -0.25 -3.58 11.55 33.57 0.39 -3.19 16 5 N -0.27 -4.16 10.96 31.32 0.34 -3.81 16 6 C 0.01 0.09 7.85 52.12 0.41 0.50 16 7 S 0.02 0.29 21.71 -107.50 -2.33 -2.04 16 8 C -0.10 -1.48 4.63 37.16 0.17 -1.31 16 9 C 0.02 0.39 2.21 -93.41 -0.21 0.18 16 10 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 11 C 0.23 4.62 13.30 -20.77 -0.28 4.34 16 12 N -0.45 -9.78 18.53 42.14 0.78 -9.00 16 13 C 0.04 0.84 4.42 -27.89 -0.12 0.72 16 14 C -0.53 -13.73 8.60 -34.44 -0.30 -14.03 16 15 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 18 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 S 0.09 0.96 23.53 -107.50 -2.53 -1.57 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.12 1.69 8.14 -51.91 -0.42 1.27 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -30.65 317.73 -6.94 -37.59 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -3.76 Total: -5.60 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.33 Total: -8.75 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 2.25 Total: -40.36 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -4.86 Total: -3.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.65 -6.94 -37.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.879 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds