Wall clock time and date at job start Tue Mar 31 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47325 * 2 1 4 4 N 1.29326 * 126.05946 * 89.97552 * 3 2 1 5 5 N 1.26090 * 117.97651 * 180.02562 * 4 3 2 6 6 C 1.30310 * 117.60542 * 359.97438 * 5 4 3 7 7 S 1.76196 * 126.17485 * 180.02562 * 6 5 4 8 8 C 1.80999 * 99.99802 * 359.95395 * 7 6 5 9 9 C 1.53002 * 109.47206 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47469 * 54.99894 * 9 8 7 11 11 C 1.47206 * 109.46755 * 294.99752 * 9 8 7 12 12 N 9.00179 * 123.75631 * 355.58303 * 2 1 3 13 13 C 1.53005 * 109.47190 * 175.00109 * 9 8 7 14 14 C 1.50696 * 109.46950 * 184.99640 * 13 9 8 15 15 H 1.07999 * 120.00418 * 359.97438 * 14 13 9 16 16 C 1.37882 * 119.99902 * 180.02562 * 14 13 9 17 17 N 1.31508 * 119.99804 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99907 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47420 * 59.99754 * 18 16 14 20 20 H 1.48501 * 109.47141 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46892 * 299.99492 * 18 16 14 22 22 S 1.76481 * 126.06147 * 269.99970 * 3 2 1 23 23 H 1.08998 * 109.46842 * 59.99860 * 1 2 3 24 24 H 1.08996 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47201 * 300.00014 * 1 2 3 26 26 H 1.09003 * 109.47201 * 239.99986 * 2 1 3 27 27 H 1.09002 * 109.47282 * 120.00303 * 2 1 3 28 28 H 1.09005 * 109.47422 * 299.99826 * 8 7 6 29 29 H 1.09000 * 109.47256 * 60.00324 * 8 7 6 30 30 H 1.08997 * 109.47129 * 304.99551 * 13 9 8 31 31 H 1.09002 * 109.46749 * 64.99840 * 13 9 8 32 32 H 0.97000 * 120.00013 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2857 2.1387 1.0455 5 7 2.7015 3.3158 0.8682 6 6 2.8472 3.7261 -0.3600 7 16 3.4101 5.3176 -0.8649 8 6 3.6787 6.0837 0.7528 9 6 4.1841 7.5152 0.5616 10 1 3.4863 8.0656 -0.0695 11 6 5.5085 7.4863 -0.0803 12 7 6.5319 7.4619 -0.5764 13 6 4.2924 8.2040 1.9235 14 6 4.6716 9.6491 1.7267 15 1 4.8210 10.0374 0.7301 16 6 4.8291 10.4754 2.8192 17 7 4.6477 10.0026 4.0329 18 14 5.2985 12.2670 2.5753 19 1 4.2588 12.9446 1.7597 20 1 5.4038 12.9355 3.8971 21 1 6.6057 12.3451 1.8750 22 16 2.3787 2.4003 -1.4266 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7402 6.1012 1.3070 29 1 4.4186 5.5082 1.3091 30 1 3.3325 8.1469 2.4369 31 1 5.0551 7.7065 2.5226 32 1 4.7588 10.5838 4.8015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594733522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:58 Heat of formation + Delta-G solvation = 65.184585 kcal Electronic energy + Delta-G solvation = -16302.557652 eV Core-core repulsion = 13516.130700 eV Total energy + Delta-G solvation = -2786.426952 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05178 -36.85919 -34.81273 -34.06123 -32.32800 -30.75233 -27.88614 -26.86290 -24.14106 -23.71258 -21.97518 -20.79376 -19.24302 -17.55374 -16.86511 -16.48818 -15.85880 -15.37371 -14.87481 -14.51028 -14.20072 -13.88027 -13.60336 -13.22420 -12.89767 -12.84493 -12.25451 -12.15103 -12.02740 -11.69592 -11.55242 -11.27071 -11.10783 -10.83302 -10.65441 -10.60861 -10.57125 -10.42041 -10.21794 -9.78964 -9.63109 -9.34662 -8.50970 -7.85766 -6.14853 -4.19564 0.11353 0.41020 0.99635 1.34316 2.00639 2.39021 3.28209 3.33076 3.35971 3.40400 3.49190 3.86749 4.35981 4.51531 4.53659 4.75720 4.79373 4.92479 5.11364 5.23079 5.33400 5.34504 5.38497 5.54392 5.76538 5.79085 6.12128 6.26907 7.33385 7.40880 7.78312 8.12726 8.25065 8.39003 8.84025 9.46366 10.95735 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.035003 B = 0.003283 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.743820 B = 8525.929672 C = 9038.145126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.040 4.040 3 C 0.025 3.975 4 N -0.248 5.248 5 N -0.266 5.266 6 C 0.006 3.994 7 S 0.021 5.979 8 C -0.098 4.098 9 C 0.022 3.978 10 H 0.114 0.886 11 C 0.232 3.768 12 N -0.454 5.454 13 C 0.038 3.962 14 C -0.532 4.532 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.276 1.276 22 S 0.089 5.911 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.615 -18.593 -9.955 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.259 4.259 4 N -0.084 5.084 5 N -0.107 5.107 6 C -0.380 4.380 7 S 0.254 5.746 8 C -0.249 4.249 9 C -0.001 4.001 10 H 0.132 0.868 11 C -0.085 4.085 12 N -0.131 5.131 13 C -0.002 4.002 14 C -0.570 4.570 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.202 1.202 22 S 0.329 5.671 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.864 -18.041 -11.313 22.700 hybrid contribution -0.235 0.585 1.373 1.511 sum -8.099 -17.456 -9.940 21.659 Atomic orbital electron populations 1.21795 0.93075 1.02871 1.02992 1.20176 0.96941 0.86325 1.04763 1.29933 1.03950 1.02915 0.89146 1.70750 1.11783 0.98965 1.26876 1.71776 1.16287 1.06791 1.15874 1.31548 1.05674 1.06094 0.94728 1.85999 1.77227 0.97953 1.13402 1.24019 1.07599 0.98344 0.94937 1.19071 0.86159 0.92966 1.01947 0.86830 1.29051 0.94933 0.92228 0.92323 1.81101 1.11649 1.09278 1.11035 1.19228 0.99450 0.94895 0.86598 1.21047 1.48591 0.94261 0.93093 0.92380 1.24945 0.94917 0.98849 0.95102 1.69924 1.48602 1.36253 0.97887 0.86622 0.79263 0.84606 0.77416 1.19963 1.21118 1.20189 1.85677 1.62734 1.06276 1.12404 0.92244 0.91014 0.91670 0.89224 0.88131 0.86259 0.87662 0.93759 0.95095 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.04 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.03 0.28 7.04 -13.33 -0.09 0.18 16 4 N -0.25 -3.58 11.55 33.57 0.39 -3.19 16 5 N -0.27 -4.16 10.96 31.32 0.34 -3.81 16 6 C 0.01 0.09 7.85 52.12 0.41 0.50 16 7 S 0.02 0.29 21.71 -107.50 -2.33 -2.04 16 8 C -0.10 -1.48 4.63 37.16 0.17 -1.31 16 9 C 0.02 0.40 2.22 -93.40 -0.21 0.19 16 10 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 11 C 0.23 4.62 13.31 -20.71 -0.28 4.34 16 12 N -0.45 -9.80 18.55 42.22 0.78 -9.02 16 13 C 0.04 0.86 4.42 -27.88 -0.12 0.74 16 14 C -0.53 -13.79 8.60 -34.44 -0.30 -14.08 16 15 H 0.06 1.48 7.59 -52.49 -0.40 1.09 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 S 0.09 0.96 23.54 -107.50 -2.53 -1.57 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.12 1.69 8.14 -51.91 -0.42 1.27 16 29 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 317.75 15.07 4.79 4.79 Total: -1.00 -30.64 317.75 -6.93 -37.57 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: -3.76 Total: -5.55 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.33 Total: -8.73 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 2.25 Total: -40.40 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -4.86 Total: -3.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.64 -6.93 -37.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.755 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds